BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G22820.1

Length=581
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479793 jgi|Araly1|479793|fgenesh2_kg.3__2494__AT3G22820.1         619    6e-177


> Ahg479793 jgi|Araly1|479793|fgenesh2_kg.3__2494__AT3G22820.1
Length=496

 Score =  619 bits (335),  Expect = 6e-177
 Identities = 411/447 (92%), Gaps = 8/447 (2%)
 Strand=Plus/Plus

Query  1    TGTCTCTTTGACTTTGGACCACTTTACCCAAAATTCCTAAACCTAAAG-ACAAAAACACT  59
            ||||||||||||||||||||||||||||| |||||| ||||||||||| | ||||| |||
Sbjct  1    TGTCTCTTTGACTTTGGACCACTTTACCCGAAATTCTTAAACCTAAAGAAGAAAAA-ACT  59

Query  60   CCTCACCGGTCCTGGCTAATGGGCGTCGTCCTCCCAACTCTCATCGTTTATGCTTTCCTT  119
            |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  60   CCTCACCGGTCCTGCCTAATGGGCGTCGTCCTCCCAACTCTCATCGTATATGCTTTCCTT  119

Query  120  CT-CTTCTTCTCGTCGTCCTCCGCCGCCTCTCTTCAACGTCCCAGTGGAGGGCTTGGGCA  178
            || ||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  120  CTCCTT-TTCTCGTTGTCCTCCGCCGCCTCTCTTCAACGTCTCAGTGGAGGGCTTGGGCA  178

Query  179  GGGGAAGAAGGAGATAGCTAGGTCGGGTTTACCGGGTCAGATTGTAGATCAGAAGCGGTT  238
            |||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||||
Sbjct  179  GGGGAAGAAGGAGACAGTTAGGTTGGGTTTACCGGGTCAGATCGTAGATCAGAAGCGGTT  238

Query  239  A-G-GG-GGACCTGGCTCGGTGCCTCCGATGTGTAGATTGAAGTGTGGGAAATGTGAGCC  295
            | | || || |||||||||| |||||||||||||||||||||||| ||||| ||||||||
Sbjct  239  AGGCGGCGGGCCTGGCTCGGCGCCTCCGATGTGTAGATTGAAGTGCGGGAAGTGTGAGCC  298

Query  296  TTGTAAAGCAGTTCACGTTCCGATTCAACCAGGTCTGATTATGCCACTGGAGTATTACCC  355
             |||||||||||||| |||||| ||||||||||||| |||  |||| ||||||| |||||
Sbjct  299  GTGTAAAGCAGTTCATGTTCCGGTTCAACCAGGTCTAATTGCGCCATTGGAGTACTACCC  358

Query  356  TGAAGCTTGGCGCTGCAAGTGTGGCAACAAACTCTTCATGCCCTAAAACCAAAAACAGAT  415
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || 
Sbjct  359  TGAAGCTTGGCGCTGCAAGTGTGGCAACAAACTCTTCATGCCCTAAACCCAAAAACCGAA  418

Query  416  CTTCATGACCTAACTTAATTAATTCTT  442
            | ||||||||||||||||||  |||||
Sbjct  419  CCTCATGACCTAACTTAATTT-TTCTT  444



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21252663073


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5