BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22830.1
Length=1538
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479794 jgi|Araly1|479794|fgenesh2_kg.3__2495__AT3G22830.1 2098 0.0
> Ahg479794 jgi|Araly1|479794|fgenesh2_kg.3__2495__AT3G22830.1
Length=1523
Score = 2098 bits (1136), Expect = 0.0
Identities = 1423/1552 (92%), Gaps = 57/1552 (4%)
Strand=Plus/Plus
Query 10 CTCTCCCTCTATCTGCAAATTTTCCAAAGTTGCATCCTTTCAATTTCCACTCCTCTCTAA 69
||||| |||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 1 CTCTCTCTCTATCTGCAAATTTTCCAAAGTTGCATCCTTTCAATTTTCA---CT-TCT-- 54
Query 70 TATAATTCACATTTTCCCACTATTGCTGATTCAtttttttttGTGAATTATTTCAAACCC 129
| | | | | | ||| ||| | | || ||||||||||||||||||| ||||||
Sbjct 55 T-T--CT-A-A---T-CCA--ATT-C--A--CA-TTTTTTTTGTGAATTATTTGAAACCC 97
Query 130 ACATaaaaaaaTCTTTGTTTAAATTTAAAACCATGGATCCTTCATTTAGGTTCATTAAAG 189
|| | | ||| |||||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct 98 AC-TTCAGAAA-CTTTGTTTAAATTTGAAACCATGGATCCATCATTTAGATTCATTAAAG 155
Query 190 AGGAGTTTCCTGCTGGATTCAGTGATTCTCCATCACCACCA---TCTTCTTC-T--TCAT 243
||||||||||| ||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 156 AGGAGTTTCCTACTGGATTCAGTGATTCTCCATCACCACCATCTTCTTCTTCTTCCTCAT 215
Query 244 ACCTTTATTCATCTTCCATGGCTGAAGCAGCCATAAATGATCCAACAACATTGAGCTATC 303
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 216 ACCTTTATTCATCTTCCATGGCTGAAGCAGCCCTATATGATCCAACAACATTGAGCTATC 275
Query 304 CACAACCATTAGAAGGTCTCCATGAATCAGGGCCACCTCCATTTTTGACAAAGACATATG 363
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 276 CACAACCAATAGAAGGTCTCCATGAATCTGGGCCACCTCCATTTTTGACAAAGACATATG 335
Query 364 ACTTGGTGGAAGATTCAAGAACCAATCATGTCGTGTCTTGGAGCAAATCCAATAACAGCT 423
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 336 ACTTGGTAGAAGATTCAAGAACCAATCATGTAGTGTCTTGGAGCAAATCCAATAATAGCT 395
Query 424 TCATTGTCTGGGATCCACAGGCCTTTTCTGTAACTCTCCTTCCCAGATTCTTCAAGCACA 483
||||||| ||||||||||| || ||||| | |||||||| |||||||||||||||||||
Sbjct 396 TCATTGTTTGGGATCCACAAGCTTTTTCCATCACTCTCCTCCCCAGATTCTTCAAGCACA 455
Query 484 ATAACTTCTCCAGTTTTGTCCGCCAGCTCAACACATATGGTTTCAGAAAGGTGAATCCGG 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 ATAACTTCTCCAGTTTTGTCCGCCAGCTCAACACATATGGTTTCAGAAAGGTGAATCCGG 515
Query 544 ATCGGTGGGAGTTTGCAAACGAAGGGTTTCTTAGAGGGCAAAAGCATCTCCTCAAGAACA 603
|||| |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 516 ATCGATGGGAGTTTGCAAATGAAGGGTTTCTAAGAGGGCAAAAGCATCTCCTTAAGAACA 575
Query 604 TAAGGAGAAGAAAAACAAGTAATAATAGTAATCAAATGCAACAACCTCAAAGTTCTGAAC 663
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 576 TAAGGAGAAGAAAAACAAGTAACAATAGTAATCAACTGCAACAACCTCAAAGTTCTGAAC 635
Query 664 AACAATCTCTAGACAATTTTTGCATAGAAGTGGGTAGGTACGGTCTAGATGGAGAGATGG 723
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 636 AACAATCTCTAGACAATTTTTGCATAGAAGTTGGTAGGTATGGTCTAGATGGAGAGATGG 695
Query 724 ACAGCCTAAGGCGAGACAAGCAAGTGT-TGATGATGGAGCTAGTGAGACTAAGACAGCAA 782
||||||||||||||||||| ||||| | |||||||||||||||||||||| ||||| |||
Sbjct 696 ACAGCCTAAGGCGAGACAAACAAGT-TCTGATGATGGAGCTAGTGAGACTGAGACAACAA 754
Query 783 CAACAAAGCACCAAAATGTATCTCACATTGATTGAAGAGAAGCTCAAGAAGACCGAGTCA 842
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct 755 CAACAAAGCACCAAAATGTATCTCACTTTGATTGAAGAGAAGCTGAAGAAGACGGAATCG 814
Query 843 AAACAAAAACAAATGATGAGCTTCCTTGCCCGCGCAATGCAGAATCCAGATTTTATTCAG 902
|||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 815 AAACAACAACAAATGATGGGCTTCCTTGCCCGTGCAATGCAGAATCCAGATTTTATTCAG 874
Query 903 CAGCTAGTAGAGCAGAAGGAAAAGAGGAAAGAGATCGAAGAGGCGATCAGCAAGAAGAGA 962
||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 875 CAGCTCGTAGAGCAGAAGGAAAAGAGGAAGGAGATAGAAGAGGCCATCAGCAAGAAGAGA 934
Query 963 CAAAGACCGATCGATCAAGGAAAAAGAAATGTGG--AA-G----A--TTATGGTGATGAA 1013
|||||||||||||||||||| ||||||||||| | || | | ||||| ||||| |
Sbjct 935 CAAAGACCGATCGATCAAGGGAAAAGAAATGTTGTTAATGTGGGAGATTATGATGATGCA 994
Query 1014 AGTGGTTATGGGAATGATGTTGCAGCCTCATCCTCAGCAT-----T-GA-TTG----G-T 1061
||||||||||||||||||| |||||||||| ||||||| | | | || | |
Sbjct 995 AGTGGTTATGGGAATGATGCTGCAGCCTCAGCCTCAGCCTCAGCCTCGGCTTTTCTTGAT 1054
Query 1062 ATGAGTCAGGAATATACATATGGAAACATGTCTGAATTCGAGATGTCGGAGTTGGACAAA 1121
|||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 ATGAGTCAAGAA-A--CATATGGAAACATGTCTGAATTCGAGATGTCGGAGTTGGACAAA 1111
Query 1122 CTTGCTATGCACATTCAAGGACTTGGAGATAATTCCAGTGCTAGGGAAGAAGTCTTGAAT 1181
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1112 CTTGCTATGCACATTCAAGGACTTGGAGATCATTCCAGTACTAGGGAAGAAGTCTTGAAT 1171
Query 1182 GTGGAAAAAGGAAATGATGAGGAAGAAGTAGAAGATCAACAACAAGGGTACCATAAGGAG 1241
||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1172 GTGGAAAAAAGAAATGATGAGGAAGAAGAAGAAGATCAACAACAAGGGTACCAAAAGGAG 1231
Query 1242 AACAATGAGATTTATGGTGAAGGTTTTTGGGAAGATTTGTTAAATGAAGGTCAAAATTTT 1301
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 AACAAGGAGATTTATGGTGAAGGTTTTTGGGAAGATTTGTTAAATGAAGGTCAAAATTTT 1291
Query 1302 GATTTTGAAGGAGATCAAGAAAATGTTGATGTGTTAATTCAGCAACTTGGTTATTTGGGT 1361
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1292 GATTTTGAAGGAGATCAAGAAAATGTTGATGTGTTAATTGAGCAACTTGGTTATTTGGGT 1351
Query 1362 TCTAGTTCACACACTAATTAAGAAGAAATTGAAATGATGACTACTTTAAGCATTTGAATC 1421
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1352 TCTAGTTCACACACTAGTTAAGAAGAAATTGAAATGATGACTACTTTAAGCATTTAAATC 1411
Query 1422 AACTTGTTTCCTATTAGTAATTTGGCTTTGTTTCAATCAAGTGAGTCGTGGACTAACTTA 1481
|||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1412 AACTTGTTTCCTCTTAGTAATTTGGCTTTGTTTCAATTAAGTGAGTCGTGGTCTAACTTA 1471
Query 1482 TTGAATTTGGGGGTTAAATCCGTTTCTTATTTTTGGAAATAAAATTGCTTTT 1533
|||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1472 TTGAATTTGGGGGTTAAATCTGTTACTTATTTTTGGAAATAAAATTGCTTTT 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57592450440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5