BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22845.1
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479795 jgi|Araly1|479795|fgenesh2_kg.3__2496__AT3G22845.1 1210 0.0
> Ahg479795 jgi|Araly1|479795|fgenesh2_kg.3__2496__AT3G22845.1
Length=864
Score = 1210 bits (655), Expect = 0.0
Identities = 792/855 (93%), Gaps = 22/855 (3%)
Strand=Plus/Plus
Query 47 AAGAAGATCTaaaaaaaaaGATGGAGAGACGACAAGCGAAGATCCATGTCTTTGTATTGA 106
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 24 AAGAAGATCTAAAAAAGAAGATGGAGAGAAGACAAGCGAAGATCCATGTCTTTGTATTGA 83
Query 107 TAGGTCTAATTCTATTGAATTCAATCAATCAAATCTCATCTCTCTCTGTAACGGTGAACG 166
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 84 TTGGTCTAATTCTATTGAATTCGATCAATCAAATCTCATCGCTCTCTGTAACGGTGAACG 143
Query 167 ACGAAGAATGTGTCCAAGAGTACGTCCTTTACGAAGGCGACACTGTTTCCGGTAACTTCG 226
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 144 ACGAAGAATGTGTCCAAGAATACGTCCTTTACGAAGGCGACACTGTTTCCGGTAACTTCG 203
Query 227 TCGTCGTCGATCATGATATCTTCTGGGGATCCGATCATCCTGGTTTGGATTTCACGGTGA 286
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 204 TCGTCGTCGATCATGATATCTTCTGGGGATCAGATCATCCTGGTTTAGATTTCACGGTGA 263
Query 287 CGTCACCAGCTGGGAACATTGTACAGACTTTAAAGGGAACATCTGGAGATAAGTTTGAGT 346
|||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 264 CGTCTCCAGCTGGGAACATTGTGCAAACTTTAAAGGGAACATCTGGAGATAAGTTTGAGT 323
Query 347 TTAAGGCTCCAAAAAGTGGAATGTACAAATTTTGTTTCCACAATCCTTATTCTACTCCTG 406
|||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 324 TTAAGGCTCCAAGAAGTGGAATGTATAAATTTTGTTTCCACAATCCTTATTCAACTCCTG 383
Query 407 AAACTGTCTCCTTTTATATTCATGTTGGTCATATTCCTAATGAGCATGACTTAGCCAAAG 466
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 AAACTGTCTCCTTCTATATTCATGTTGGTCATATTCCTAATGAGCATGACTTAGCCAAAG 443
Query 467 ATGAACATTTGGACCCGGTAAATGTTAAGATAGCTGAGTTGAGAGAGGCTTTGGAATCTG 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 ATGAACATTTGGACCCGGTAAATGTTAAGATAGCTGAGTTGAGAGAGGCTTTGGAATCTG 503
Query 527 TTGTTGCTGAGCAGAAGTATTTGAAAGCTCGTGACACTCGTCACCGTCATACGAATGAGA 586
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 504 TTGTTGCTGAGCAGAAGTATTTGAAAGCACGTGATACTCGTCACCGTCATACGAATGAAA 563
Query 587 GCACGAGAAAGCGAGTGATATTCTACACAGTAGGAGAGTACATTTTCCTTGCCGCAGCTA 646
||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 564 GCACGAGAAAGCGTGTGATATTGTACACAGTAGGAGAGTACATATTCCTTGCAGCAGCTA 623
Query 647 GTGGACTTCAAGTTCTCTACATCCGCAAGCTCTTCAGCAAGTCGGTAGCATACAACAGAG 706
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 624 GTGGACTTCAAGTTCTCTACATCCGCAAGCTCTTCAGCAAGTCGGTCGCATACAACAGAG 683
Query 707 TTTGAACATAGCAAAACCTCAGAGCGAGGTCTTGTGTCCAGTTTATGTTTGAATCGGTGA 766
|||||||||| |||||| |||| | || ||| | | || || ||| || |
Sbjct 684 TTTGAACATAACAAAACATCAGTTT-ATGT-TTG-G-C---TTG--GT--GAA-CGA--A 729
Query 767 TCAAAACACAA-TCCTAAACAGTGTTAGTTAATTTAAAAGCTTCAATAGCGAAAGACTTA 825
||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 730 TCAAAACACAAATCTTAAACAGTGTTAGTTAACTTAAAAGCTTCAATAGCGAAAGACTCC 789
Query 826 CTTTTTGTTTTTGGTTTCTACACTTTTATAAGT-TT-A--CTA---ATGCAGAACTTGAT 878
||||||||||||||||||||||||||| | | || | ||| ||||||||||||||
Sbjct 790 CTTTTTGTTTTTGGTTTCTACACTTTTCTTTGGCTTCAATCTACTTATGCAGAACTTGAT 849
Query 879 GAAGCTTTTTTCTGA 893
|||||| |||||||
Sbjct 850 AAAGCTTATTTCTGA 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33662535711
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5