BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22850.1
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930281 jgi|Araly1|930281|scaffold_302738.1 1253 0.0
> Ahg930281 jgi|Araly1|930281|scaffold_302738.1
Length=787
Score = 1253 bits (678), Expect = 0.0
Identities = 739/769 (96%), Gaps = 2/769 (0%)
Strand=Plus/Plus
Query 43 CGTGATCGGGAAGAAGAAGAAAATGTTGGCGATTTTCGACAAGAACGTGGCGAAAACACC 102
|||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 CGTGATCGGGAAGAAG-A-AAAATGTTGGCGATTTTCGACAAGAACGTAGCGAAAACACC 58
Query 103 CGAGGCTCTTCAGGGTCAAGAGGGTGGATCGGTTTGTGCTCTTAAAGATAGGTTCTTGCC 162
||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 59 CGAGGCTCTGCAGAGTCAAGAGGGTGGATCTGTTTGTGCTCTTAAAGATAGGTTCTTGCC 118
Query 163 GAACCATTTCTCCTCTGTTTATCCTGGTGCTGTCACCATCAATCTCGGATCTTCTGGTTT 222
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 119 GAACCATTTCTCCTCTGTTTATCCTGACGCTGTCACCATCAATCTTGGATCTTCTGGTTT 178
Query 223 CATTGCTTGCTCTCTCGAGAAACAGAACCCTCTTCTTCCCAGATTGTTTGCTGTGGTGGA 282
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CATCGCTTGCTCTCTCGAGAAACAGAACCCTCTTCTTCCCAGATTGTTTGCTGTGGTGGA 238
Query 283 TGATATGTTCTGCATATTCCAAGGACATATAGAGAACGTTCCAATTCTTAAGCAACAATA 342
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGATATGTTCTGCATTTTCCAAGGACATATAGAGAACGTTCCAATTCTTAAGCAACAATA 298
Query 343 TGGACTAACCAAAACAGCTACAGAGGTTACCATTGTGATTGAAGCCTACAGAACTCTAAG 402
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 299 TGGACTAACCAAAACAGCCACAGAAGTTACCATTGTGATTGAAGCCTATAGAACTCTAAG 358
Query 403 AGATCGTGGTCCGTATTCAGCTGAACAAGTTGTTAGAGATTTTCAAGGCAAATTCGGGTT 462
|||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |||
Sbjct 359 AGATCGTGGTCCGTATTCTGCTGACCAAGTTGTTAGAGATTTTCATGGCAAATTCGCGTT 418
Query 463 TATGCTCTATGACTGCTCCACACAAAATGTCTTCCTTGCCGGGGATGTAGATGGGAGTGT 522
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 419 TATGCTCTATGACTGCTCCACACAAAATGTCTTCCTTGCTGGGGATGTAGATGGGAGTGT 478
Query 523 TCCTCTCTACTGGGGAACCGATGCTGAAGGACATCTTGTTGTTTCTGATGATGTTGAGAC 582
|||||| |||||||| |||||||||||||| |||||||||||||||||||| || |||||
Sbjct 479 TCCTCTTTACTGGGGTACCGATGCTGAAGGCCATCTTGTTGTTTCTGATGAAGTAGAGAC 538
Query 583 TGTCAAGAAGGGTTGTGGTAAATCCTTTGCGCCATTCCCTAAAGGATGTTTCTTTACCTC 642
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGTCAAGAAAGGTTGTGGTAAATCCTTTGCGCCATTCCCTAAAGGATGTTTCTTTACCTC 598
Query 643 ATCTGGAGGTTTGAGGAGCTATGAGCATCCATCAAATGAGTTAAAGCCGGTACCAAGGGT 702
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 599 ATCTGGAGGTTTGAGGAGCTATGAGCATCCATCAAACGAGTTAAAGCCGGTACCAAGGGT 658
Query 703 AGACAGTTCGGGTGAGGTTTGCGGTGTAACGTTTAAAGTGGATTCTGAGGCCAAGAAAGA 762
|||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 659 AGACAGTTCGGGTGAGGTGTGCGGTGTAACTTTTAAAGTGGATTCCGAGGCCAAGAAAGA 718
Query 763 AGCGATGCCTAGGGTTGGGAGTGTTCAGAATTGGTCTAAACAAATCTGA 811
|||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 719 AGCGATGCCTAGGGTTGGGAGTGTCCAGAATTGGTCTAAACAAATCTGA 767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37398581577
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5