BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22860.1
Length=2418
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905323 jgi|Araly1|905323|Al_scaffold_0003_2451 3055 0.0
Ahg486056 jgi|Araly1|486056|fgenesh2_kg.5__2048__AT3G56150.1 1626 0.0
> Ahg905323 jgi|Araly1|905323|Al_scaffold_0003_2451
Length=2376
Score = 3055 bits (1654), Expect = 0.0
Identities = 2183/2424 (90%), Gaps = 93/2424 (4%)
Strand=Plus/Plus
Query 28 CAGAGTGGAAGTGAAAGTGAAGATGAGAGTGACTTTGAAAAAGAAGAGGTTGAGGGTAAC 87
||| |||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||
Sbjct 13 CAGGGTGGAAGTGAAAGTGAAGATGAGAGTGATTTTG--AAA-AAGAGGTTGAGAGTAAC 69
Query 88 AACACTCGTTACCTTGCAGACTTACCTGACGGTGAGATTTGTTGTGGTATGGATACTAAA 147
|||| |||||||||||||||| |||||||||||||| |||||||| |||||||||| |||
Sbjct 70 AACATTCGTTACCTTGCAGACCTACCTGACGGTGAGTTTTGTTGTTGTATGGATACAAAA 129
Query 148 CGTGTGGTTAAGCCaaaaaaaGATAAACGTTTTGAGGAGATGGCCAACACTATAGAGAAT 207
|||||||||||||||| |||||||||| ||||||| |||||| |||||||||||||||||
Sbjct 130 CGTGTGGTTAAGCCAAGAAAAGATAAATGTTTTGAAGAGATGACCAACACTATAGAGAAT 189
Query 208 ATGAAGCATGCCATGAACATCAATGATTGTGTTTACTTGCAAGAAACGTTTGAGAAACTC 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 ATGAAGCATGCCATGAACATCAATGATTGTGTTTACTTGCAAGAAACGTTTGAGAAACTC 249
Query 268 AAC-AA-A-C---AG--A--T-T--AG-----TAAGTCCGTAAAGACTCCGACTTTGTAT 309
||| || | | || | | | || |||||| || ||| | ||||||||||||
Sbjct 250 AACAAACATCTTGAGAAAGTTATGAAGATTACTAAGTCTGTGAAGGCGCCGACTTTGTAT 309
Query 310 ATCAAGACCCTTGTGATGTTGGAAGATTTCTTGAATGAAGATAATATGAAAACAAAGGAG 369
||||| ||||||||| |||||||||||||||||||||||||||| | | || ||
Sbjct 310 ATCAAAACCCTTGTGTTGTTGGAAGATTTCTTGAATGAAGATAA-A-G-----TAA-GA- 360
Query 370 AAGATGAGTACTAGTAACTCCAAGGCTTTGAACGCAATGAGACAGAAACTGAAGAAGAAC 429
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 361 AAGATGAGTACTAGTAACTCCAAGGCTTTTAACTCAATGAGACAGAAACTGAAGAAGAAC 420
Query 430 AATCTGCAGTACCAAGAAGATATCAAAAGATTTAGGGAGTCTCCAGAAATCGAAGACGAT 489
||| |||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||
Sbjct 421 AATATGCAGTACCAAGAAGATATCAATAGGTTTAGGGAGTCTCCAGATATCGAGGACGAT 480
Query 490 GATGAGTATGAAGAGGAGGTGGTGGAGGAT-T-CTGCTGATAATGTTTCTTGGGAGATGT 547
|||||||||||||||||||||| ||| || | ||| |||||||||||||||||||||||
Sbjct 481 GATGAGTATGAAGAGGAGGTGGAGGA--ATCTACTGATGATAATGTTTCTTGGGAGATGT 538
Query 548 TGTTTAGTTTAGATCATGAAGAGATAACTTGGAACATGGTCAACAAGAAGTTCAAAGAAA 607
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGTTTAGTTTAGATCATGAAGTGATAACTTGGAACATGGTCAACAAGAAGTTCAAAGAAA 598
Query 608 TTAGGGCTGCTCGTTGGAGCAAAAGAAGAAGTTCTAGCCTTAAACTCAAACCCGGCGAGA 667
||| |||||||||| |||| |||||||||||| |||| |||||||||||| | |||||||
Sbjct 599 TTATGGCTGCTCGTGGGAGTAAAAGAAGAAGTGCTAGACTTAAACTCAAAACTGGCGAGA 658
Query 668 CTCATGCGCAGAAGCATATGGACTTGACAAAGATCGCCAAGACTCCTGCACAGAAGGTTG 727
|||| ||| | |||| |||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 659 CTCACGCGGATAAGCTTATGGACTTGACAAAGATTGCCAAGACTCCTGCACAGAAGCTTG 718
Query 728 AAATCTTGTTTAGTGTTATTTCAGCAGAGTTTAATGTGAATTCTGGTGGTCTCAGCGGAT 787
|||||||||||| ||||||||||| || | | || |||||||||||||| ||
Sbjct 719 TAATCTTGTTTAGCGTTATTTCAGC--AG----A---G--TT-TGGTGGTCTCAGCGAAT 766
Query 788 ACATGCCTATCGATGTCTGGAAGAAATGTGTGGTTAACATGCTTACCATACTTGACATTC 847
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 ACATGCCTATCGATGTCTGGAAGAAATGTGTGGTTAACATGCTTACCATACTTGACATTA 826
Query 848 TTGTCAAGTACTATAACA-T--TGTTGTGGATGATACCGTTGAACCTGATGAGAAGGAAA 904
|||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct 827 TTGTCAAGTACTATAACATTAATGTTGTGGATGATACCGCTGAACCTGATGAGAAGGAAA 886
Query 905 CTTCAAAGCCAGCGGCA-TACGATGGAACCATTCGGGTCTCGGGAAATTTGGTTGCATTC 963
|||||||||||| || | ||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 887 CTTCAAAGCCAGTGG-ATTACGATGGAACAATTCGTGTCTCGGGGAATTTGGTTGCATTC 945
Query 964 TTAGAGAAGATTGAGACAGAGTTTTTCAAGAGTTTGCAGTGCATTGATCCTCACACCAAT 1023
||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 946 TTAGAGAGGATTGAGACAGAGTTTTTCAAGGGTTTGCAGTGCATAGATCCTCACACCAAT 1005
Query 1024 GATTATGTTGAGAGGTTGAAAGATGAGCCTATGTTCTTGGCTCTTGCTCAGAGTATCCAA 1083
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1006 GAGTATGTAGAGAGATTGAAAGATGAGCCTATGTTCTTGGCTCTTGCTCAGAAAATCCAA 1065
Query 1084 GACTACTTGGAGCGGA-CAGGCGATT-CTAAAGCTGCTTCAAAGGTAGCCTTTATACTAG 1141
|||||||||||||||| | ||||||| | |||| |||||||||||||||||| |||||||
Sbjct 1066 GACTACTTGGAGCGGAGC-GGCGATTAC-AAAGGTGCTTCAAAGGTAGCCTTAATACTAG 1123
Query 1142 TCGAGTCAATCTATTACAAGCCTCAAGAAGTTTTTGATGCTATG-AGTAAATTGGCTGAT 1200
| |||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 1124 TTGAGTCAATCTATTACAAGCCTCAAGAAGTTTTTGATGCTATGAAG-AAAATGGCTGAT 1182
Query 1201 GAGGAAATTGAGGA-GGCTAACGAGGAAAGTGGATCTTCTTCTTCTTCATTCATTGTTGT 1259
|| ||||||||||| ||| || | ||||||||| | || | ||||
Sbjct 1183 GAAGAAATTGAGGAGGGC-AA--A-GAAAGTGGA-------C--CTAC-TTCA------- 1221
Query 1260 TGCGGAGATTGTTCCTCGTAAGCCTACCTTCGCAAAGAGCAGCAGAGCTATGATGGATAC 1319
| ||||||||||||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct 1222 --C--AGATTGTTCCTCGTAAGCCTACCTTCGCAGGGAGCAGCCGCGCTATGATGGATAC 1277
Query 1320 ACTTGTATCCTTTATCTACAAAAATGGAGATGAGAGGACCAAAGCCAGAGCAATGCTATG 1379
||| ||||||||||||||| |||||||||||| ||| ||||| ||||||||||||||||
Sbjct 1278 ACTCATATCCTTTATCTACACAAATGGAGATGAAAGGGCCAAATCCAGAGCAATGCTATG 1337
Query 1380 TGATATCTATCAACATGCTTTAATGGACAATTTTGTTACTGCTAGAGACTTGTTGCTGAT 1439
||||||||||||||||||||||||||| || ||||| |||||||||||||||||| ||||
Sbjct 1338 TGATATCTATCAACATGCTTTAATGGATAACTTTGTGACTGCTAGAGACTTGTTGTTGAT 1397
Query 1440 GAGTCATCTACAAGAAAACATTCAACACATGGACATCTCTACACAGATTCTCTTTAACAG 1499
||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1398 GAGTCATCTACAAGACAACATTCAACACATGGACATTTCAACACAGATTCTCTTTAACAG 1457
Query 1500 GACAATGGCACAACTTGGTCTTTGCGCTTTTCGGGTTGGAATGATAACTGAGTCACATAG 1559
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1458 GACAATGGCACAACTTGGTCTTTGCGCCTTTCGGGTTGGAATGATAAATGAGTCACATAG 1517
Query 1560 CTGTCTCTCTGAGCTGTACTCTGGGAATAGAGTTAGGGAGTTGCTTGGTCAAGGTGTCTC 1619
||| |||||||||||||||||||| ||||||| |||||||| || || |||||||||||
Sbjct 1518 CTGCCTCTCTGAGCTGTACTCTGGTCATAGAGTGAGGGAGTTTCTCGGCCAAGGTGTCTC 1577
Query 1620 GCAAAGTCGAGACCACGAGAAGACAACAGAGCAGATGCTTATGGAGAGGAGAACACAAAT 1679
| ||| |||||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 1578 GAAAAATCGAGACCACGAGAAGACAACAGAGCAGATTCTAATGGAGAGGAGAAGACAAAT 1637
Query 1680 ACCGTACCATATGAACATAAACCTCGAGCTCTTGGAGGCTGTTTATCTTACTTGTGCCAT 1739
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1638 ACCGTACCACATGCACATAAACCTCGAGCTCTTGGAGGCTGTTTATCTTACTTGTGCCAT 1697
Query 1740 GCTACTTGAAGTCCCAAACATGGCAGCAAACTCGCATGATTCCAAACACAAACCGATTAG 1799
|||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 1698 GCTACTTGAAGTCCCAAACATGGCAGCAAACTCGCATGATGCCAAACACAAATCGGTTAG 1757
Query 1800 CAAGAATATTCAG-CGCCTGCTCGAGAAAAGTGAGAAGCAAGCGTTCACTGCACCCCCTG 1858
|||||||||| | ||||||||||||| ||||||| |||||||||||||||||| ||||
Sbjct 1758 CAAGAATATTT-GTCGCCTGCTCGAGATCAGTGAGAGGCAAGCGTTCACTGCACCGCCTG 1816
Query 1859 AAAATGTACGTGTCCATGTCATTGCAGCCACCAGAGCCCTGATCAAAGG-AAACTTCCAA 1917
||| | |||||| ||||||||| ||||| ||||||||| ||| |||||| ||| ||||||
Sbjct 1817 AAACTATACGTGACCATGTCATGGCAGCAACCAGAGCCTTGACCAAAGGGAAA-TTCCAA 1875
Query 1918 GAAGCGTTTTCAGTTTTGAACTCTCTTGATATCTGGAGACTGTTCAAGAACCGCGACAGC 1977
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1876 GAAGCGTTTTCAGTTTTGAACTCTCTTGATGTCTGGAGACTGTTCAAGAACCGCGACAGC 1935
Query 1978 ATACTCGATATGGTGAAAGCTAGTATCA-GTGAAGTGGCTCTAAGGACTTATTTATTCAC 2036
| ||| |||||||||||||||| |||| | ||||||||||||||||||||| |||||||
Sbjct 1936 GTCCTCAATATGGTGAAAGCTAGGATCAAG-GAAGTGGCTCTAAGGACTTATCTATTCAC 1994
Query 2037 ATACTCGAGCTCCTGTTACAAGTCCTTAAGTCTAGCTGAGCTAGCCAAAATGTTTGACAT 2096
|||||| ||||||| || ||||| |||||||| | ||||||||||||||||||||||||
Sbjct 1995 ATACTCAAGCTCCTACTATAAGTCATTAAGTCTTGATGAGCTAGCCAAAATGTTTGACAT 2054
Query 2097 CTCTGAGTCACACGTCTATAGTATTGTGAGCAAGATGATGATCAACAAGGAGCTTAATGC 2156
|||||||||||| ||| |||| |||||||||||||||||||||||| ||||||||| |||
Sbjct 2055 CTCTGAGTCACAGGTCCATAGCATTGTGAGCAAGATGATGATCAACGAGGAGCTTACTGC 2114
Query 2157 AACATGGGACCAGCCAACTCAATGCATCGTCTTCCATGAAGTGCAACATAACAGAGCACA 2216
|| |||||||||||||||||| |||||| |||||||||||||||||||||||||| |||
Sbjct 2115 AAAATGGGACCAGCCAACTCAGTGCATCATCTTCCATGAAGTGCAACATAACAGATTACA 2174
Query 2217 ATCCTTGGCTTTTCAGATTACCGAAAAACTCGCGACTCTAGCAGAAAGCAACGAAAGTGC 2276
||| |||||||||||||| |||||||| ||| | ||| ||||||||||||||||||||||
Sbjct 2175 ATCTTTGGCTTTTCAGATAACCGAAAAGCTCTCTACTTTAGCAGAAAGCAACGAAAGTGC 2234
Query 2277 AATGGAGTCTA-AAACTGGTGGTGTTGGCCTTGATATGACTTCAAGGAGAAGGGAAAACA 2335
||||||||||| ||| |||||||| ||| |||||||||| ||||||||| ||||| ||||
Sbjct 2235 AATGGAGTCTAGAAA-TGGTGGTGCTGGTCTTGATATGAGTTCAAGGAGGAGGGACAACA 2293
Query 2336 GTCAGGACTATGCAGCAGCAGCATCAG-ACAACAGAGGTCTGAAAATGGATGGCTCAAGT 2394
||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||
Sbjct 2294 GTCAGGACTATGCAGCAGCAGCATCAGGA-AACAGAGGTCTGCAAATGGATGGCTCAAGT 2352
Query 2395 CTTACCCGAGGCGTTTCTGCGTAA 2418
||||||||||||||||||||||||
Sbjct 2353 CTTACCCGAGGCGTTTCTGCGTAA 2376
> Ahg486056 jgi|Araly1|486056|fgenesh2_kg.5__2048__AT3G56150.1
Length=2864
Score = 1626 bits (880), Expect = 0.0
Identities = 1441/1708 (84%), Gaps = 53/1708 (3%)
Strand=Plus/Plus
Query 689 ACTTGACAAAGATCGCCAAGACTCCTGCACAGAAGGTTGAAATCTTGTTTAGTGTTATTT 748
||||||||||||| |||||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 764 ACTTGACAAAGATTGCCAAGACTCCTGCGCAGAAGCTTGAAATCTTGTTTAGCGTTATTT 823
Query 749 CAGCAGAGTTTAATGTGAATTCTGGTGGTCTCAGCGGATACATGCCTATCGATGTCTGGA 808
| || ||||| ||||||| || ||||||||||| ||||||||||| |||||||||
Sbjct 824 CGGCTCAGTTTGATGTGAA-TC--CAGGTCTCAGCGGGCACATGCCTATCAATGTCTGGA 880
Query 809 AGAAATGTGTGGTTAACATGCTTACCATACTTGACATTCTTGTCAAGTACTATAACATTG 868
||||||| ||| |||||||||| |||||||| |||||||| ||||||||| |||||||||
Sbjct 881 AGAAATGCGTGCTTAACATGCTCACCATACTGGACATTCTCGTCAAGTACAATAACATTG 940
Query 869 TTGTGGATGATACCGTTGAACCTGATGAGAAGGAAACTTCAAAGCCAGCGGCA-TACGAT 927
|||||||||| || ||||||||||||||||| ||||||||||||||||| | | || |||
Sbjct 941 TTGTGGATGACACAGTTGAACCTGATGAGAATGAAACTTCAAAGCCAGCAG-ATTATGAT 999
Query 928 GGAACCATTCGGGTCTCGGGAAATTTGGTTGCATTCTTAGAGAAGATTGAGACAGAGTTT 987
|||| || ||||||| ||||||||||||||||||||| |||| |||||| || ||||||
Sbjct 1000 GGAAAAATCCGGGTCTGGGGAAATTTGGTTGCATTCTTGGAGAGGATTGACACTGAGTTT 1059
Query 988 TTCAAGAGTTTGCAGTGCATTGATCCTCACACCAATGATTATGTTGAGAGGTTGAAAGAT 1047
|||||||||||||| |||||||||||||||||| ||| ||||||||||| ||| |||
Sbjct 1060 TTCAAGAGTTTGCAATGCATTGATCCTCACACCCGTGAGTATGTTGAGAGACTGAGGGAT 1119
Query 1048 GAGCCTATGTTCTTGGCTCTTGCTCAGAGTATCCAAGACTACTTGGAGCGGACAGGCGAT 1107
||||| ||||||||||| |||||||||| ||||| |||||||| ||||||| || |||
Sbjct 1120 GAGCCCATGTTCTTGGCCCTTGCTCAGAACATCCAGGACTACTTCGAGCGGATGGGTGAT 1179
Query 1108 TCTAAAGCTGCTTCAAAGGTAGCCTTTATACTAGTCGAGTCAATCTATTACAAGCCTCAA 1167
| |||||||||| ||||||||||||| | || ||| ||| |||| ||||||||||| ||
Sbjct 1180 TTTAAAGCTGCTGCAAAGGTAGCCTTAAGACGAGTTGAGGCAATATATTACAAGCCCCAG 1239
Query 1168 GAAGTTTTTGATGCTATGAGTAAATTGGCTGA--T-GAGG-A-AA-TTG-AG--G-AG-- 1215
||||||| |||||||||||| ||||||||||| | | || | || | || | ||
Sbjct 1240 GAAGTTTATGATGCTATGAGGAAATTGGCTGAGTTGGTGGAAGAAGAAGAAGAAGAAGAA 1299
Query 1216 G---CTAACGAGG--AAAGT-G-GA-T-CTTCTTCTTCTTCATTCATTGTTGTTGCGGAG 1266
| || | |||| ||||| | || | || || | ||||||||||||||| |||||
Sbjct 1300 GAAACTGAGGAGGCCAAAGTGGAGAGTGGACCTCCTACATCATTCATTGTTGTTCCGGAG 1359
Query 1267 ATTGTTCCTCGTAAGCCTACCTTCGCAAAGAGCAGCAGAGCTATGATGGATACACTTGTA 1326
||||||| || |||||||||||| || |||||||| |||| |||||||||| |||||
Sbjct 1360 GTTGTTCCCCGAAAGCCTACCTTCCCAGAGAGCAGCCGAGCAATGATGGATATTCTTGTG 1419
Query 1327 TCCTTTATCTACAAAAATGGAGATGAGAGGACCAAAGC-CAGAGCAATGCTATGTGATAT 1385
||| ||||||||| ||||||||||||| | |||||||| | | || ||||||||||||||
Sbjct 1420 TCCCTTATCTACAGAAATGGAGATGAGCGAACCAAAGCTC-GTGCGATGCTATGTGATAT 1478
Query 1386 CTATCAACATGCTTTAATGGACAATTTTGTTACTGCTAGAGACTTGTTGCTGATGAGTCA 1445
| |||| ||||||||||||||||| |||| |||||||||||| ||||||||||||||||
Sbjct 1479 CAATCACCATGCTTTAATGGACAACTTTGGGACTGCTAGAGACCTGTTGCTGATGAGTCA 1538
Query 1446 TCTACAAGAAAACATTCAACACATGGACATCTCTACACAGATTCTCTTTAACAGGACAAT 1505
||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1539 TCTGCAAGACAACATCCAGCACATGGACATCTCAACACAGATTCTCTTTAACAGGACCAT 1598
Query 1506 GGCACAACTTGGTCTTTGCGCTTTTCGGGTTGGAATGATAACTGAGTCACATAGCTGTCT 1565
||| || |||||||||||||| || |||||||||||||| |||||||| |||||||| ||
Sbjct 1599 GGCGCAGCTTGGTCTTTGCGCCTTCCGGGTTGGAATGATCACTGAGTCCCATAGCTGCCT 1658
Query 1566 CTCTGAGCTGTACTCTGG-GAATAGAGTTAGGGAGTTGCTTGGTCAAGGTGTCTCGCAAA 1624
|| |||||||| ||||| || || || ||||||||||||| |||||||| |||||||
Sbjct 1659 TTCCGAGCTGTATTCTGGTCAA-AGGGTGAGGGAGTTGCTTGCCCAAGGTGTTTCGCAAA 1717
Query 1625 GTCGAGACCACGAGAAGACAACAGAGCA-G-ATGCTTATGGAGAGGAGAACACAAATACC 1682
| ||| |||| |||||||| ||||||| | | | ||||||||||||| |||||| ||
Sbjct 1718 GCCGATACCATGAGAAGACCCCAGAGCAGGAAAG--GATGGAGAGGAGAAGACAAATGCC 1775
Query 1683 GTACCATATGAACATAAACCTCGAGCTCTTGGAGGCTGTTTATCTTACT-TGTGCCATGC 1741
|||||| ||| || |||||||||||||| ||||||| ||| |||| | | ||||||||||
Sbjct 1776 GTACCACATGCACTTAAACCTCGAGCTCCTGGAGGCAGTTCATCTCA-TCTGTGCCATGC 1834
Query 1742 TACTTGAAGTCCCAAACATGGCAGCAAACTCGCATGATTCCAAACACAAACCGATTAGCA 1801
|||||||||||||||||||||| ||||||||||| ||| |||||| || | ||||||||
Sbjct 1835 TACTTGAAGTCCCAAACATGGCTGCAAACTCGCACGATGCCAAACGCAGAGTGATTAGCA 1894
Query 1802 AGAATATTCAG-CGCCTGCTCGAGAAAAGTGAGAA-GCAAGCGTTCACTGCACCCCCTGA 1859
||||| ||| | ||||||||||||| ||||| || |||||| ||| |||| || |||||
Sbjct 1895 AGAAT-TTCCGCCGCCTGCTCGAGATCAGTGA-AAGGCAAGCATTCGCTGCGCCGCCTGA 1952
Query 1860 AAATGTACGTGTCCATGTCATTGCAGCCACCAGAGCCCTGATCAAAGGAAACTTCCAAGA 1919
|||||||||| ||| ||||| ||||||||||||||||||| |||||| | |||| |||
Sbjct 1953 GAATGTACGTGACCACGTCATGGCAGCCACCAGAGCCCTGACCAAAGGGGATTTCC-AGA 2011
Query 1920 A-GCGTTTTCAGTTTTGAACTCTCTTGATATCTGGAGACTGTTCAAGAACCGCGACAGCA 1978
| |||||| |||||||||||||||||| ||||||| ||| |||||||||| |||||||
Sbjct 2012 AGGCGTTTGAAGTTTTGAACTCTCTTGAGGTCTGGAGGCTGCTCAAGAACCGTGACAGCA 2071
Query 1979 TACTCGATATGGTGAAAGCTAGTATCAGTGAAGTGGCTCTAAGGACTTATTTATTCACAT 2038
| |||||||||||||| | ||| |||| |||| ||| ||||||||||| |||||||||
Sbjct 2072 TCCTCGATATGGTGAAGGATAGGATCAAAGAAGAGGCACTAAGGACTTACCTATTCACAT 2131
Query 2039 ACTCGAGCTCCTGTTACAAGTCCTTAAGTCTAGCTGAGCTAGCCAAAATGTTTGACATCT 2098
|||| |||||| || ||||||||||||| | | |||| ||||||||||||||| |||
Sbjct 2132 ACTCAAGCTCC---TATGAGTCCTTAAGTCTTGATCAGCTGGCCAAAATGTTTGACGTCT 2188
Query 2099 CTGAGTCACACGTCTATAGTATTGTGAGCAAGATGATGATCAACAAGGAGCTTAATGCAA 2158
||||| | || ||| | || |||||||||||||||||||| || |||||||| ||||||
Sbjct 2189 CTGAGCCGCAGGTCCACAGCATTGTGAGCAAGATGATGATTAATGAGGAGCTTCATGCAA 2248
Query 2159 -CATGGGACCAGCCAACTCAATGCATCGTCTTCCATGAAGTGCAACATAACAGAGC-ACA 2216
| |||||||||||||||||||||||||||||||||||||||||||| | |||| | |||
Sbjct 2249 GC-TGGGACCAGCCAACTCAATGCATCGTCTTCCATGAAGTGCAACACAGCAGA-CTACA 2306
Query 2217 ATCCTTGGCTTTTCAGATTA-CCGAAAAACTCGCGACTCTAGCAGAAAGCAACGAAAGTG 2275
||| |||||||| ||| ||| |||| |||||| ||| | | ||||||||||| ||||| |
Sbjct 2307 ATCATTGGCTTTCCAG-TTAACCGAGAAACTCTCGATTTTGGCAGAAAGCAATGAAAGGG 2365
Query 2276 CAATGGAGTCTAAAACTGGTGGTGTTGGCCTTGATATGA-CTTCAAGGAGAAGGGAAAAC 2334
||||||| |||| ||| ||||| | ||| | ||| ||| || ||||||||||||| |||
Sbjct 2366 CAATGGAATCTAGAACCGGTGGAGGTGGTGTGGATCTGAGCT-CAAGGAGAAGGGACAAC 2424
Query 2335 AGTCAGGACTATGCAGCAGCAGCATCAG 2362
| ||| |||||||||| |||||||||||
Sbjct 2425 AATCAAGACTATGCAGGAGCAGCATCAG 2452
Score = 246 bits (133), Expect = 5e-64
Identities = 394/511 (77%), Gaps = 54/511 (11%)
Strand=Plus/Plus
Query 9 GACTTCTCGTTTTTTCGCTCAGAGTGGAAGTGAAAGTGAAGATGAGAGTGACTT-TGAA- 66
||| |||||||||||||||||| |||||||||||||||||||||||||||| || ||||
Sbjct 6 GACGTCTCGTTTTTTCGCTCAGGGTGGAAGTGAAAGTGAAGATGAGAGTGA-TTATGAAG 64
Query 67 AA-AG---AA-GAGGTTGAGGGTAACAAC---ACT--C-GTTACCTTGCAGACTTACCTG 115
|| || || |||||| || | || || ||| | |||||||| || | | |
Sbjct 65 AAGAGGTTAATGAGGTTCAGAATGACGACGTCACTAACCGTTACCTT-CAAAGTGG--T- 120
Query 116 ACGGTGAG-ATTTGTTGTGGTATGGATACTAAACGTGTGGTTAAGCCaaaaaaaGATAAA 174
| | |||| || ||| | ||| ||||| ||||||||||||||||| |||||||||
Sbjct 121 A-G-TGAGGATGACTTG-GATATCGATACCAAACGTGTGGTTAAGCCTGCCAAAGATAAA 177
Query 175 CGTTTTGAGGAGATGGCCAACACTATAGAGAATATGAAGCATGCCATGAACATCAATGAT 234
||||||||||||||| || ||||| | ||| | |||||| |||| ||||| || ||||||
Sbjct 178 CGTTTTGAGGAGATGACCTACACTGTTGAGCAGATGAAGAATGCTATGAAGATTAATGAT 237
Query 235 TGTGTTTA-C-TTGCAAGAAA-CGTTTGAGAAACTCAACAAACAGATT-AG----T-A-- 283
|| ||| | | || ||||||| | ||||| || | ||||||||| || || | |
Sbjct 238 TGGGTT-AGCCTT-CAAGAAAAC-TTTGATAAGGTTAACAAACAGCTTGAGAAGGTTATG 294
Query 284 AG--T--C-----C-GTAAAGACTCCGACTTTGTATATCAAGACCCTTGTGATGTTGGAA 333
|| | | | || ||| |||| || |||||||||||||| ||||| ||||||||
Sbjct 295 AGGATTACTGAGGCTGTCAAGCCTCCTACCTTGTATATCAAGACTCTTGTTATGTTGGAG 354
Query 334 GATTTCTTGAATGAAGA--T----AATATGAAAACAAAGGAGAAGATGAGTACTAGTAAC 387
|||||||||| ||||| | |||| | || | ||| |||||||||| |||||||||
Sbjct 355 GATTTCTTGATTGAAGCCCTTGCGAATAAGGAAGCCAAGAAGAAGATGAGCACTAGTAAC 414
Query 388 TCCAAGGCTTTGAACGCAATGAGACAGAAACTGAAGAAGAACAATCTGCAGTACCAAGAA 447
||||||||||||||| | |||| |||||||||||||||||||||| || |||| ||||
Sbjct 415 TCCAAGGCTTTGAACTCTATGAAACAGAAACTGAAGAAGAACAATAAGCTGTACGAAGAT 474
Query 448 GATATCAA-AAGATTTAGGGAGTCTCCAGAA 477
|||||||| || || | | ||||||||||||
Sbjct 475 GATATCAACAA-ATATCGTGAGTCTCCAGAA 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91111866040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5