BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22900.1
Length=712
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930286 jgi|Araly1|930286|scaffold_302743.1 841 0.0
> Ahg930286 jgi|Araly1|930286|scaffold_302743.1
Length=568
Score = 841 bits (455), Expect = 0.0
Identities = 525/559 (94%), Gaps = 4/559 (1%)
Strand=Plus/Plus
Query 93 GGCTGAAGAAAATGTTCATCAAAGTGAAATTGCCATGGGATGTTACGATTCCAGCTGAAG 152
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 12 GGCTGAAGAAAATGTTCATCAAAGTCAAATTGCCATGGGATGTTACAATTCCAGCTGAAG 71
Query 153 ATATGGACACTGGCCTTATGCTTCAGAGAGCTATTGTCATTCGTCTACTCGAAGCCTTTT 212
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 72 ATATGGACACTGGCCTTATGCTCCAGAGAGCTATTGTCATTCGCCTACTCGAAGCCTTTG 131
Query 213 CTA-AAGAGAAAGCAACAAAAGATCTTGGATACTTGATAACACCGACAATTCTTGAGAAC 271
|| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 132 GTACCA-AGAAAGCAACAAAAGATCTTGGATACTTGATAACACCCACAATTCTTGAGAAC 190
Query 272 ATCGGTGAGGGTAAGATCAAGGAACAGACCGGCGAAATTCAGTTTCCCGTAGTTTTTAAC 331
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 191 ATCGGTGAGGGTAAGATCAAGGAACAGACAGGCGAAATTCAATTTCCCGTAGTTTTCAAC 250
Query 332 GGAATCTGCTTCAAGATGTTTAAAGGAGAGATTGTTCATGGTGTGGTGCACAAGGTTCAC 391
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||
Sbjct 251 GGAATCTGCTTCAAGATGTTTAAAGGAGAGGTTGTTCATGGTGTGGTGCAAAAGGTGCAC 310
Query 392 AAGA-CTGGTGTCTTTTTGAAATCTGGCCCTTATGAAATCATTTACCTATCACACATGAA 450
|||| | || |||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 311 AAGAGC-GGAGTCTTTTTGAGATCTGGCCCTTATGAAATCATTTACCTATCACACTTGAA 369
Query 451 AATGCCTGGTTACGAGTTCATTCCAGGCGAGAACCCGTTTTTCATGAATCAGTACATGTC 510
|||||| |||||||||||||||||||| ||||| ||| |||||||||||||| |||||||
Sbjct 370 AATGCCCGGTTACGAGTTCATTCCAGGAGAGAAACCGATTTTCATGAATCAGAACATGTC 429
Query 511 CCGGATTCAAATCGGTGCCAGAGTTCGTTTCGTCGTGTTAGATACCGAGTGGAGAGAGGC 570
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 430 CCGGATTCAAATCGGCACCAGAGTTCGTTTCATCGTGTTAGATACCGAGTGGAGAGAGGC 489
Query 571 AGAGAAAGACTTCATGGCTTTGGCTAGCATCGATGGAGACAATCTTGGTCCGTTCTAAAA 630
|||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 490 AGAGAAAGACTTCATGGCTTTGGCCAGCATCGACGGAGACAATCTTGGCCCGTTCTAAAA 549
Query 631 AGATTGTAATCTTAATTTT 649
||||| |||||| ||||||
Sbjct 550 AGATTCTAATCTGAATTTT 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26190443979
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5