BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G22900.1 Length=712 Score E Sequences producing significant alignments: (Bits) Value Ahg930286 jgi|Araly1|930286|scaffold_302743.1 841 0.0 > Ahg930286 jgi|Araly1|930286|scaffold_302743.1 Length=568 Score = 841 bits (455), Expect = 0.0 Identities = 525/559 (94%), Gaps = 4/559 (1%) Strand=Plus/Plus Query 93 GGCTGAAGAAAATGTTCATCAAAGTGAAATTGCCATGGGATGTTACGATTCCAGCTGAAG 152 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 12 GGCTGAAGAAAATGTTCATCAAAGTCAAATTGCCATGGGATGTTACAATTCCAGCTGAAG 71 Query 153 ATATGGACACTGGCCTTATGCTTCAGAGAGCTATTGTCATTCGTCTACTCGAAGCCTTTT 212 |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 72 ATATGGACACTGGCCTTATGCTCCAGAGAGCTATTGTCATTCGCCTACTCGAAGCCTTTG 131 Query 213 CTA-AAGAGAAAGCAACAAAAGATCTTGGATACTTGATAACACCGACAATTCTTGAGAAC 271 || | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 132 GTACCA-AGAAAGCAACAAAAGATCTTGGATACTTGATAACACCCACAATTCTTGAGAAC 190 Query 272 ATCGGTGAGGGTAAGATCAAGGAACAGACCGGCGAAATTCAGTTTCCCGTAGTTTTTAAC 331 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 191 ATCGGTGAGGGTAAGATCAAGGAACAGACAGGCGAAATTCAATTTCCCGTAGTTTTCAAC 250 Query 332 GGAATCTGCTTCAAGATGTTTAAAGGAGAGATTGTTCATGGTGTGGTGCACAAGGTTCAC 391 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| Sbjct 251 GGAATCTGCTTCAAGATGTTTAAAGGAGAGGTTGTTCATGGTGTGGTGCAAAAGGTGCAC 310 Query 392 AAGA-CTGGTGTCTTTTTGAAATCTGGCCCTTATGAAATCATTTACCTATCACACATGAA 450 |||| | || |||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 311 AAGAGC-GGAGTCTTTTTGAGATCTGGCCCTTATGAAATCATTTACCTATCACACTTGAA 369 Query 451 AATGCCTGGTTACGAGTTCATTCCAGGCGAGAACCCGTTTTTCATGAATCAGTACATGTC 510 |||||| |||||||||||||||||||| ||||| ||| |||||||||||||| ||||||| Sbjct 370 AATGCCCGGTTACGAGTTCATTCCAGGAGAGAAACCGATTTTCATGAATCAGAACATGTC 429 Query 511 CCGGATTCAAATCGGTGCCAGAGTTCGTTTCGTCGTGTTAGATACCGAGTGGAGAGAGGC 570 ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 430 CCGGATTCAAATCGGCACCAGAGTTCGTTTCATCGTGTTAGATACCGAGTGGAGAGAGGC 489 Query 571 AGAGAAAGACTTCATGGCTTTGGCTAGCATCGATGGAGACAATCTTGGTCCGTTCTAAAA 630 |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct 490 AGAGAAAGACTTCATGGCTTTGGCCAGCATCGACGGAGACAATCTTGGCCCGTTCTAAAA 549 Query 631 AGATTGTAATCTTAATTTT 649 ||||| |||||| |||||| Sbjct 550 AGATTCTAATCTGAATTTT 568 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26190443979 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5