BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22910.1
Length=3054
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930287 jgi|Araly1|930287|scaffold_302744.1 4783 0.0
Ahg486176 jgi|Araly1|486176|fgenesh2_kg.5__2168__AT3G57330.1 89.8 1e-16
> Ahg930287 jgi|Araly1|930287|scaffold_302744.1
Length=3115
Score = 4783 bits (2590), Expect = 0.0
Identities = 2913/3070 (95%), Gaps = 17/3070 (1%)
Strand=Plus/Plus
Query 1 ATGCGGAGAAACGTATCTGATCATGCAGAGAAGAAGGACAAGGTGGGCGTTGAGGTTCTT 60
||||| |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 27 ATGCGAAGAAACGTTTCTGATCATGCAGAGAAGAAGAACAAGGTAGGCGTTGAGGTTCTT 86
Query 61 CTGGAACTTCCCAAAACCCTAAGCAAATCAAACAAAAAATGGCAATTAGCATTGATCAAG 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 87 CTGGAACTTCCCAAAACCCTAAGCAAATCAAACAAGAAATGGCAATTAGCATTCATCAAG 146
Query 121 CTCTACTGTTCAAGAACTCTCCTCAATTGCGCCAAACACGCTATCCGAAAACCCGGTTTG 180
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 147 ATCTACTGTTCAAGAACTCTCCTCAATTGCGCTAAACACGCTATCCGAAAACCCGGTTTG 206
Query 181 TTCCCTCGTTCTCTTTCATACACCGCCATTGATCTTGAT---CA-C--------CATCAT 228
||||||||||||||||| |||||||||||| |||||||| || | ||||||
Sbjct 207 TTCCCTCGTTCTCTTTCCTACACCGCCATTAATCTTGATCACCATCAAGATGATCATCAT 266
Query 229 GGAGATGATCACTTCAAGATTGATACTGAAACCTTAAACGATCTCGTCAAGAACAAGAAC 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 GGAGATGATCACTTCAAGATTGATACTGAAACCTTAAACGATCTCGTCAAGAACAAGAAC 326
Query 289 CAAGAGAAACTTGAGTCTCTTGGTGGTCCTAATGGCTTAGTCTCAGCTCTCAAGAGTAAC 348
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||
Sbjct 327 CAAGAGAAACTTGAGTCTCTTGGTGGTCCTAATGGTTTAGTCTCGGCTCTTAAGACTAAC 386
Query 349 ACACGTCTCGGGATCAACGAAGAAGGTGATGAGATTCAACGTAGACGTTCAACGTTCGGG 408
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 387 ACACGTCTCGGTATCAACGAAGAAGGTGATGAGATTCAACGTAGACGTTCGACGTTCGGG 446
Query 409 TCCAACACTTACACAAGACAACCATCGAAGGGTCTTTTCCATTTTGTGGTGGAAGCTTTC 468
|| || |||||||| ||||||||||||||| |||| ||| ||||||| ||||||||||||
Sbjct 447 TCTAATACTTACACGAGACAACCATCGAAGAGTCTCTTCTATTTTGTAGTGGAAGCTTTC 506
Query 469 AAGGACTTAACGATTCTTATCCTTCTCGGTTGCGCAACGCTCTCTCTCGGGTTTGGTATC 528
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 507 AAGGACCTAACGATTCTTATCCTTCTCGGTTGCGCAACACTCTCTCTCGGGTTTGGTATC 566
Query 529 AAAGAGCATGGATTAAAAGAAGGATGGTACGATGGAGGAAGTATATTCGTAGCGGTTTTC 588
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 AAAGAGCATGGTTTGAAAGAAGGATGGTACGATGGAGGAAGTATATTCGTAGCGGTTTTC 626
Query 589 TTGGTGGTAGCTGTCTCTGCGGTCAGCAACTTCAGACAGAACAGACAGTTTGATAAACTC 648
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 627 TTGGTGGTAGCTGTCTCTGCGGTCAGTAACTTCAGACAGAACAGACAGTTCGATAAACTT 686
Query 649 TCTAAAGTAAGTAGTAACATTAAGATCGATGTTGTTAGAAACGGACGTCGTCAAGAGATT 708
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 687 TCTAAAGTAAGTAGTAACATCAAGATCGATGTTGTTAGAAACGGACGTCGGCAAGAGATT 746
Query 709 TCGATCTTTGATATTGTCGTTGGAGATATCGTTTGTTTGAACATCGGAGATCAAGTTCCA 768
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 TCGATCTTTGACATTGTCGTTGGAGATATCGTTTGTTTGAACATCGGAGATCAAGTTCCA 806
Query 769 GCTGATGGAGTGTTCGTTGAAGGACATTTGTTACACGTTGATGAATCAAGCATGACTGGA 828
|| |||||||||||||||||||||||| |||| ||||||||||||||||| ||||| |||
Sbjct 807 GCGGATGGAGTGTTCGTTGAAGGACATCTGTTGCACGTTGATGAATCAAGTATGACCGGA 866
Query 829 GAAAGCGATCATGTCGAGGTTAGCCTAACCGGAAACACATTTTTGTTCTCCGGGACTAAA 888
|||||||||||||||||||||||| || ||||||||||||| ||||| || ||||||||
Sbjct 867 GAAAGCGATCATGTCGAGGTTAGCTTATCCGGAAACACATTCTTGTTTTCGGGGACTAAG 926
Query 889 ATAGCTGATGGGTTCGGTAAAATGGCGGTTACTTCCGTTGGGATGAACACAGCTTGGGGA 948
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 ATCGCTGATGGGTTCGGTAAAATGGCGGTTACTTCCGTTGGGATGAACACAGCTTGGGGA 986
Query 949 CAAATGATGAGTCATATCTCGCGTGACACTAACGAGCAAACTCCGTTGCAGTCTCGTCTC 1008
|||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||
Sbjct 987 CAAATGATGAGTCATATCTCTCGTGACACGAACGAGCAAACTCCATTGCAATCTCGTCTC 1046
Query 1009 GATAAGCTTACTTCTTCCATAGGTAAAGTTGGTTTACTTGTAGCTTTCTTGGTTCTTTTG 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 GATAAGCTTACTTCTTCCATAGGTAAAGTTGGTTTACTTGTAGCTTTCTTGGTTCTTTTG 1106
Query 1069 GTTCTGTTAATTCGTTACTTCACGGGAACCACGAAAGACGAGAGCGGAAACCGTGAGTAT 1128
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 GTTCTGTTAATTCGTTATTTCACGGGAACCACGAAAGACGAGAGCGGAAACCGTGAGTAT 1166
Query 1129 AACGGAAAGACTACGAAGAGCGATGAGATAGTGAACGCTGTGGTTAAGATGGTTGCAGCT 1188
|||||||||| || ||||||||||| || ||||| || |||||||||||||||||||||
Sbjct 1167 AACGGAAAGAAGACAAAGAGCGATGAAATCGTGAATGCAGTGGTTAAGATGGTTGCAGCT 1226
Query 1189 GCGGTTACAATCATCGTAGTTGCGATACCTGAAGGATTGCCATTAGCTGTGACATTGACA 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 GCGGTTACAATCATCGTAGTTGCGATACCTGAAGGATTGCCATTAGCTGTGACATTGACA 1286
Query 1249 TTGGCGTATTCAATGAAGAGAATGATGAAAGATAATGCTATGGTGAGAAAGCTCTCTGCT 1308
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1287 TTGGCGTATTCAATGAAGAGGATGATGAAAGATAATGCTATGGTGAGAAAGCTCTCTGCT 1346
Query 1309 TGTGAGACAATGGGCTCTGCAACGGTTATTTGTACCGATAAAACCGGTACTTTGACGCTT 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 TGTGAGACAATGGGCTCTGCAACGGTTATTTGTACCGATAAAACCGGTACTTTGACGCTT 1406
Query 1369 AACCAGATGAAGGTAACCGATTTCTGGTTCGGTCTCGAATCAGGAAAAGCTTCTTCTGTG 1428
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1407 AACCAAATGAAGGTAACTGATTTCTGGTTCGGTCTCGAGTCAGGAAAAGCTTCTTCTGTG 1466
Query 1429 TCTCAGAGAGTTGTTGAATTGTTTCATCAAGGAGTTGCAATGAACACTACAGGGAGTGTG 1488
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 TCTCAGAAAGTTGTTGAATTGTTTCATCAAGGAGTTGCAATGAACACTACAGGGAGTGTG 1526
Query 1489 TTTAAGGCTAAAGCAGGAACAGAGTATGAGTTCTCTGGTTCTCCAACGGAGAAAGCGATT 1548
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1527 TTTAAGGCTAAAGCAGGAACAGAGTATGAGTTCTCCGGTAGTCCAACGGAGAAAGCGATT 1586
Query 1549 CTTAGCTGGGCGGTTGAGGAACTGGAGATGGGTATGGAGAAAGTGATTGAAGAACATGAT 1608
||||||||||||||||||||| || | |||| ||||||| |||||||||||||||| ||
Sbjct 1587 CTTAGCTGGGCGGTTGAGGAATTGAACATGGATATGGAGGAAGTGATTGAAGAACACAAT 1646
Query 1609 GTTGTTCATGTGGAAGGTTTCAATTCAGAGAAGAAGAGAAGTGGTGTGTTGATGAAGAAG 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1647 GTTGTTCATGTGGAAGGTTTCAATTCAGAGAAGAAGAGAAGTGGTGTGTTGATAAAAAAG 1706
Query 1669 AA-A--GGCGTAAACACAGAGAACAATGTTGTTCATTGGAAAGGAGCTGCTGAGAAGATT 1725
|| | || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 AAGAATGGAGAAAACACAGAGAACAATGTTGTTCATTGGAAAGGAGCTGCTGAGAAGATT 1766
Query 1726 CTAGCTATGTGTTCAACGTTCTGTGATGGTTCTGGAGTTGTGAGAGAGATGAAAGAAGAT 1785
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1767 CTAGCTATGTGTTCAACGTTCTACGATGGTTCTGGAGTTGTGAGAGAGATGAAAGAAGAT 1826
Query 1786 GATAAGATTCAGTTTGAGAAGATTATTCAATCTATGGCAGCTAAATCTCTCCGTTGCATC 1845
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1827 GATAAGATTCAGTTCGAGAAGATTATTCAATCTATGGCAGCTAAATCTCTTCGTTGCATC 1886
Query 1846 GCCTTTGCGTATTCAGAAGACAATGAGGACAACAAGAAGTTGAAAGAAGAGAAGTTGAGC 1905
|||||||||||||||||||||||||| || | ||||||||||||||||||||| ||||||
Sbjct 1887 GCCTTTGCGTATTCAGAAGACAATGAAGATATCAAGAAGTTGAAAGAAGAGAACTTGAGC 1946
Query 1906 TTACTTGGGATCATTGGAATCAAAGATCCGTGTAGACCAGGAGTGAAGAAAGCTGTTGAG 1965
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1947 TTACTTGGGATTATTGGAATCAAAGATCCTTGTAGACCTGGAGTGAAGAAAGCTGTTGAG 2006
Query 1966 GATTGTCAATTCGCCGGTGTAAACATCAAAATGATCACCGGGGATAACATTTTCACGGCG 2025
|||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct 2007 GATTGTCAATTCGCCGGTGTGAACATCAAGATGATCACTGGAGATAACATTTTCACGGCG 2066
Query 2026 AGAGCAATAGCTGTTGAGTGTGGAATCTTGACACCTGAAGATGAGATGAATAGTGAAGCT 2085
|||||||| ||||| |||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 2067 AGAGCAATCGCTGTAGAGTGTGGGATCTTGACACCTGAAGATGAGATGAACAGAGAAGCT 2126
Query 2086 GTGTTAGAAGGAGAAAAGTTTCGAAACTACACTCAAGAAGAAAGATTAGAGAAAGTCGAA 2145
||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 2127 GTGTTAGAAGGAGAAGAGTTTCGAAACTACACTCAAGAAGAAAGGTTAAAGAAAGTCGAA 2186
Query 2146 AGAATCAAAGTGATGGCGAGATCTTCACCCTTTGATAAGCTTCTTATGGTGAAATGTCTC 2205
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 2187 AGAATCAAAGTAATGGCGAGATCTTCACCGTTTGATAAGCTTCTAATGGTGAAATGTCTC 2246
Query 2206 AAGGAGTTAGGTCATGTGGTGGCGGTTACTGGAGATGGTACTAACGATGCACCAGCGTTG 2265
||||||||||| ||||| ||||||||||||||||| || || ||||||||||||||||||
Sbjct 2247 AAGGAGTTAGGCCATGTTGTGGCGGTTACTGGAGACGGGACCAACGATGCACCAGCGTTG 2306
Query 2266 AAAGAAGCTGATATTGGACTTTCTATGGGGATTCAAGGTACGGAAGTAGCGAAAGAGAGC 2325
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 2307 AAAGAAGCTGATATTGGACTTTCTATGGGGATTCAAGGCACAGAAGTTGCGAAAGAGAGC 2366
Query 2326 TCAGATATCGTGATTCTTGACGATAACTTTGCTTCTGTTGCAACGGTTTTGAAATGGGGA 2385
|| ||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 2367 TCTGATATTGTGATTCTTGACGATAACTTCGCCTCTGTTGCAACGGTTTTGAAATGGGGA 2426
Query 2386 AGATGCGTGTACAACAATATTCAGAAGTTTATTCAGTTTCAGCTCACTGTCAATGTAGCT 2445
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 2427 AGATGCGTGTACAACAATATTCAGAAGTTCATTCAGTTTCAGCTCACTGTCAATGTGGCT 2486
Query 2446 GCTCTAGTGATCAACTTCGTGGCTGCAGTTTCAGCTGGAGACGTTCCTTTGACAGCGGTT 2505
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2487 GCTCTAGTGATCAACTTCGTGGCTGCAGTTTCAGCCGGAGACGTTCCTTTGACAGCGGTT 2546
Query 2506 CAGTTACTGTGGGTTAATCTGATCATGGACACACTCGGTGCATTGGCTTTAGCTACAGAG 2565
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2547 CAGTTACTGTGGGTTAATCTGATCATGGACACACTCGGTGCATTGGCTCTAGCTACAGAG 2606
Query 2566 AAGCCAACAAACGATCTTATGAAGAAGAAACCGATAGGGAGAGTGGCGCCATTGATCACA 2625
|| |||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2607 AAACCAACAAATGATCTGATGAAGAAGAAACCAATAGGGAGAGTCGCGCCATTGATCACA 2666
Query 2626 AACATCATGTGGAGGAATCTACTAGCTCAAGCGTTTTACCAAATCTCTGTGCTCTTGGTG 2685
|||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 2667 AACATCATGTGGAGGAATCTACTAGCTCAATCGTTTTATCAGATCTCTGTGCTCTTGGTG 2726
Query 2686 CTTCAGTTTAGAGGAAGATCGATTTTCAACGTGACTGAGAAAGTGAAGAACACTTTGATC 2745
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2727 CTTCAGTTTAGAGGAAGGTCGATTTTCGACGTGACTGAGAAAGTGAAGAACACTTTGATC 2786
Query 2746 TTCAATACATTTGTGCTTTGTCAGGTGTTCAACGAGTTTAACGCTAGGAGTTTGGAGAAG 2805
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2787 TTCAATACCTTTGTGCTTTGTCAGGTGTTCAACGAGTTTAACGCCAGGAGTTTGGAGAAG 2846
Query 2806 AAGAATGTGTTTAAAGGG-TTACACAAGAACAGACTCTTCATTGGAATTATAGTTGTGAC 2864
||||||||||| || ||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2847 AAGAATGTGTTCAA-GGGCTTACACAAGAACAGGCTCTTCATTGGGATTATAGTTGTGAC 2905
Query 2865 TGTGGTTTTGCAAGTTGTGATGGTTGAGTTTCTCAAGAGATTTGCTGATACAGAGAGGCT 2924
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2906 TGTGGTTTTGCAAGTTGTAATGGTTGAGTTTCTCAAGAGATTTGCTGATACAGAGAGGCT 2965
Query 2925 AAACTTGGGTCAATGGGGAGTTTGCATTGCCATCGCAGCTGCATCGTGGCCGATTGGATG 2984
||| |||||||||||||||||||||||||| || || ||||| |||||||||||||||||
Sbjct 2966 AAATTTGGGTCAATGGGGAGTTTGCATTGCGATTGCGGCTGCGTCGTGGCCGATTGGATG 3025
Query 2985 GTTAGTGAAGTCTGTTCCGGTTCCAGAGAGACACTTCTTTAGCTACCTGAAATGGAAGAA 3044
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3026 GTTAGTGAAGTCTGTTCCAGTTCCAGAGAGACACTTCTTTAGCTACCTGAAATGGAAGAA 3085
Query 3045 GAGATCATGA 3054
||||||||||
Sbjct 3086 GAGATCATGA 3095
> Ahg486176 jgi|Araly1|486176|fgenesh2_kg.5__2168__AT3G57330.1
Length=3263
Score = 89.8 bits (48), Expect = 1e-16
Identities = 141/185 (76%), Gaps = 10/185 (5%)
Strand=Plus/Plus
Query 2379 ATGGGGAAGATGC-GTGTACAACAATATTCAGAAGTTTATTCAGTTTCAGCTCACTGTCA 2437
||||||| | ||| ||||| | || || ||||||||| ||||||| ||||| ||||| |
Sbjct 2376 ATGGGGACG-TGCTGTGTATATTAACATCCAGAAGTTTGTTCAGTTCCAGCTAACTGTTA 2434
Query 2438 ATGTAGCTGCTCTAG-TGATCAACTTCGTGGCTGC-AGTTTCAGCTGGAGAC-GTTCCTT 2494
|||| | |||| | | | |||||||| || |||| | ||| | |||| | | ||
Sbjct 2435 ATGTTGTTGCT-TTGATCATCAACTTTGTCTCTGCTTGCATCA-CCGGAG-CTGCGCCAC 2491
Query 2495 TGACAGCGGTTCAGTTACTGTGGGTTAATC-TGATCATGGACACACTCGGTGCATTGGCT 2553
| || || || || |||| ||||| || | |||||||||||||||||||||||||||||
Sbjct 2492 TCACTGCAGTGCAACTACTTTGGGTGAA-CATGATCATGGACACACTCGGTGCATTGGCT 2550
Query 2554 TTAGC 2558
||||
Sbjct 2551 CTAGC 2555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115337261860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5