BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G22910.1 Length=3054 Score E Sequences producing significant alignments: (Bits) Value Ahg930287 jgi|Araly1|930287|scaffold_302744.1 4783 0.0 Ahg486176 jgi|Araly1|486176|fgenesh2_kg.5__2168__AT3G57330.1 89.8 1e-16 > Ahg930287 jgi|Araly1|930287|scaffold_302744.1 Length=3115 Score = 4783 bits (2590), Expect = 0.0 Identities = 2913/3070 (95%), Gaps = 17/3070 (1%) Strand=Plus/Plus Query 1 ATGCGGAGAAACGTATCTGATCATGCAGAGAAGAAGGACAAGGTGGGCGTTGAGGTTCTT 60 ||||| |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 27 ATGCGAAGAAACGTTTCTGATCATGCAGAGAAGAAGAACAAGGTAGGCGTTGAGGTTCTT 86 Query 61 CTGGAACTTCCCAAAACCCTAAGCAAATCAAACAAAAAATGGCAATTAGCATTGATCAAG 120 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 87 CTGGAACTTCCCAAAACCCTAAGCAAATCAAACAAGAAATGGCAATTAGCATTCATCAAG 146 Query 121 CTCTACTGTTCAAGAACTCTCCTCAATTGCGCCAAACACGCTATCCGAAAACCCGGTTTG 180 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 147 ATCTACTGTTCAAGAACTCTCCTCAATTGCGCTAAACACGCTATCCGAAAACCCGGTTTG 206 Query 181 TTCCCTCGTTCTCTTTCATACACCGCCATTGATCTTGAT---CA-C--------CATCAT 228 ||||||||||||||||| |||||||||||| |||||||| || | |||||| Sbjct 207 TTCCCTCGTTCTCTTTCCTACACCGCCATTAATCTTGATCACCATCAAGATGATCATCAT 266 Query 229 GGAGATGATCACTTCAAGATTGATACTGAAACCTTAAACGATCTCGTCAAGAACAAGAAC 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 267 GGAGATGATCACTTCAAGATTGATACTGAAACCTTAAACGATCTCGTCAAGAACAAGAAC 326 Query 289 CAAGAGAAACTTGAGTCTCTTGGTGGTCCTAATGGCTTAGTCTCAGCTCTCAAGAGTAAC 348 ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| |||| Sbjct 327 CAAGAGAAACTTGAGTCTCTTGGTGGTCCTAATGGTTTAGTCTCGGCTCTTAAGACTAAC 386 Query 349 ACACGTCTCGGGATCAACGAAGAAGGTGATGAGATTCAACGTAGACGTTCAACGTTCGGG 408 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 387 ACACGTCTCGGTATCAACGAAGAAGGTGATGAGATTCAACGTAGACGTTCGACGTTCGGG 446 Query 409 TCCAACACTTACACAAGACAACCATCGAAGGGTCTTTTCCATTTTGTGGTGGAAGCTTTC 468 || || |||||||| ||||||||||||||| |||| ||| ||||||| |||||||||||| Sbjct 447 TCTAATACTTACACGAGACAACCATCGAAGAGTCTCTTCTATTTTGTAGTGGAAGCTTTC 506 Query 469 AAGGACTTAACGATTCTTATCCTTCTCGGTTGCGCAACGCTCTCTCTCGGGTTTGGTATC 528 |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 507 AAGGACCTAACGATTCTTATCCTTCTCGGTTGCGCAACACTCTCTCTCGGGTTTGGTATC 566 Query 529 AAAGAGCATGGATTAAAAGAAGGATGGTACGATGGAGGAAGTATATTCGTAGCGGTTTTC 588 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 567 AAAGAGCATGGTTTGAAAGAAGGATGGTACGATGGAGGAAGTATATTCGTAGCGGTTTTC 626 Query 589 TTGGTGGTAGCTGTCTCTGCGGTCAGCAACTTCAGACAGAACAGACAGTTTGATAAACTC 648 |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 627 TTGGTGGTAGCTGTCTCTGCGGTCAGTAACTTCAGACAGAACAGACAGTTCGATAAACTT 686 Query 649 TCTAAAGTAAGTAGTAACATTAAGATCGATGTTGTTAGAAACGGACGTCGTCAAGAGATT 708 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 687 TCTAAAGTAAGTAGTAACATCAAGATCGATGTTGTTAGAAACGGACGTCGGCAAGAGATT 746 Query 709 TCGATCTTTGATATTGTCGTTGGAGATATCGTTTGTTTGAACATCGGAGATCAAGTTCCA 768 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 747 TCGATCTTTGACATTGTCGTTGGAGATATCGTTTGTTTGAACATCGGAGATCAAGTTCCA 806 Query 769 GCTGATGGAGTGTTCGTTGAAGGACATTTGTTACACGTTGATGAATCAAGCATGACTGGA 828 || |||||||||||||||||||||||| |||| ||||||||||||||||| ||||| ||| Sbjct 807 GCGGATGGAGTGTTCGTTGAAGGACATCTGTTGCACGTTGATGAATCAAGTATGACCGGA 866 Query 829 GAAAGCGATCATGTCGAGGTTAGCCTAACCGGAAACACATTTTTGTTCTCCGGGACTAAA 888 |||||||||||||||||||||||| || ||||||||||||| ||||| || |||||||| Sbjct 867 GAAAGCGATCATGTCGAGGTTAGCTTATCCGGAAACACATTCTTGTTTTCGGGGACTAAG 926 Query 889 ATAGCTGATGGGTTCGGTAAAATGGCGGTTACTTCCGTTGGGATGAACACAGCTTGGGGA 948 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 927 ATCGCTGATGGGTTCGGTAAAATGGCGGTTACTTCCGTTGGGATGAACACAGCTTGGGGA 986 Query 949 CAAATGATGAGTCATATCTCGCGTGACACTAACGAGCAAACTCCGTTGCAGTCTCGTCTC 1008 |||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||| Sbjct 987 CAAATGATGAGTCATATCTCTCGTGACACGAACGAGCAAACTCCATTGCAATCTCGTCTC 1046 Query 1009 GATAAGCTTACTTCTTCCATAGGTAAAGTTGGTTTACTTGTAGCTTTCTTGGTTCTTTTG 1068 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1047 GATAAGCTTACTTCTTCCATAGGTAAAGTTGGTTTACTTGTAGCTTTCTTGGTTCTTTTG 1106 Query 1069 GTTCTGTTAATTCGTTACTTCACGGGAACCACGAAAGACGAGAGCGGAAACCGTGAGTAT 1128 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1107 GTTCTGTTAATTCGTTATTTCACGGGAACCACGAAAGACGAGAGCGGAAACCGTGAGTAT 1166 Query 1129 AACGGAAAGACTACGAAGAGCGATGAGATAGTGAACGCTGTGGTTAAGATGGTTGCAGCT 1188 |||||||||| || ||||||||||| || ||||| || ||||||||||||||||||||| Sbjct 1167 AACGGAAAGAAGACAAAGAGCGATGAAATCGTGAATGCAGTGGTTAAGATGGTTGCAGCT 1226 Query 1189 GCGGTTACAATCATCGTAGTTGCGATACCTGAAGGATTGCCATTAGCTGTGACATTGACA 1248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1227 GCGGTTACAATCATCGTAGTTGCGATACCTGAAGGATTGCCATTAGCTGTGACATTGACA 1286 Query 1249 TTGGCGTATTCAATGAAGAGAATGATGAAAGATAATGCTATGGTGAGAAAGCTCTCTGCT 1308 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1287 TTGGCGTATTCAATGAAGAGGATGATGAAAGATAATGCTATGGTGAGAAAGCTCTCTGCT 1346 Query 1309 TGTGAGACAATGGGCTCTGCAACGGTTATTTGTACCGATAAAACCGGTACTTTGACGCTT 1368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1347 TGTGAGACAATGGGCTCTGCAACGGTTATTTGTACCGATAAAACCGGTACTTTGACGCTT 1406 Query 1369 AACCAGATGAAGGTAACCGATTTCTGGTTCGGTCTCGAATCAGGAAAAGCTTCTTCTGTG 1428 ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1407 AACCAAATGAAGGTAACTGATTTCTGGTTCGGTCTCGAGTCAGGAAAAGCTTCTTCTGTG 1466 Query 1429 TCTCAGAGAGTTGTTGAATTGTTTCATCAAGGAGTTGCAATGAACACTACAGGGAGTGTG 1488 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1467 TCTCAGAAAGTTGTTGAATTGTTTCATCAAGGAGTTGCAATGAACACTACAGGGAGTGTG 1526 Query 1489 TTTAAGGCTAAAGCAGGAACAGAGTATGAGTTCTCTGGTTCTCCAACGGAGAAAGCGATT 1548 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 1527 TTTAAGGCTAAAGCAGGAACAGAGTATGAGTTCTCCGGTAGTCCAACGGAGAAAGCGATT 1586 Query 1549 CTTAGCTGGGCGGTTGAGGAACTGGAGATGGGTATGGAGAAAGTGATTGAAGAACATGAT 1608 ||||||||||||||||||||| || | |||| ||||||| |||||||||||||||| || Sbjct 1587 CTTAGCTGGGCGGTTGAGGAATTGAACATGGATATGGAGGAAGTGATTGAAGAACACAAT 1646 Query 1609 GTTGTTCATGTGGAAGGTTTCAATTCAGAGAAGAAGAGAAGTGGTGTGTTGATGAAGAAG 1668 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 1647 GTTGTTCATGTGGAAGGTTTCAATTCAGAGAAGAAGAGAAGTGGTGTGTTGATAAAAAAG 1706 Query 1669 AA-A--GGCGTAAACACAGAGAACAATGTTGTTCATTGGAAAGGAGCTGCTGAGAAGATT 1725 || | || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1707 AAGAATGGAGAAAACACAGAGAACAATGTTGTTCATTGGAAAGGAGCTGCTGAGAAGATT 1766 Query 1726 CTAGCTATGTGTTCAACGTTCTGTGATGGTTCTGGAGTTGTGAGAGAGATGAAAGAAGAT 1785 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1767 CTAGCTATGTGTTCAACGTTCTACGATGGTTCTGGAGTTGTGAGAGAGATGAAAGAAGAT 1826 Query 1786 GATAAGATTCAGTTTGAGAAGATTATTCAATCTATGGCAGCTAAATCTCTCCGTTGCATC 1845 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1827 GATAAGATTCAGTTCGAGAAGATTATTCAATCTATGGCAGCTAAATCTCTTCGTTGCATC 1886 Query 1846 GCCTTTGCGTATTCAGAAGACAATGAGGACAACAAGAAGTTGAAAGAAGAGAAGTTGAGC 1905 |||||||||||||||||||||||||| || | ||||||||||||||||||||| |||||| Sbjct 1887 GCCTTTGCGTATTCAGAAGACAATGAAGATATCAAGAAGTTGAAAGAAGAGAACTTGAGC 1946 Query 1906 TTACTTGGGATCATTGGAATCAAAGATCCGTGTAGACCAGGAGTGAAGAAAGCTGTTGAG 1965 ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1947 TTACTTGGGATTATTGGAATCAAAGATCCTTGTAGACCTGGAGTGAAGAAAGCTGTTGAG 2006 Query 1966 GATTGTCAATTCGCCGGTGTAAACATCAAAATGATCACCGGGGATAACATTTTCACGGCG 2025 |||||||||||||||||||| |||||||| |||||||| || |||||||||||||||||| Sbjct 2007 GATTGTCAATTCGCCGGTGTGAACATCAAGATGATCACTGGAGATAACATTTTCACGGCG 2066 Query 2026 AGAGCAATAGCTGTTGAGTGTGGAATCTTGACACCTGAAGATGAGATGAATAGTGAAGCT 2085 |||||||| ||||| |||||||| |||||||||||||||||||||||||| || |||||| Sbjct 2067 AGAGCAATCGCTGTAGAGTGTGGGATCTTGACACCTGAAGATGAGATGAACAGAGAAGCT 2126 Query 2086 GTGTTAGAAGGAGAAAAGTTTCGAAACTACACTCAAGAAGAAAGATTAGAGAAAGTCGAA 2145 ||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 2127 GTGTTAGAAGGAGAAGAGTTTCGAAACTACACTCAAGAAGAAAGGTTAAAGAAAGTCGAA 2186 Query 2146 AGAATCAAAGTGATGGCGAGATCTTCACCCTTTGATAAGCTTCTTATGGTGAAATGTCTC 2205 ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 2187 AGAATCAAAGTAATGGCGAGATCTTCACCGTTTGATAAGCTTCTAATGGTGAAATGTCTC 2246 Query 2206 AAGGAGTTAGGTCATGTGGTGGCGGTTACTGGAGATGGTACTAACGATGCACCAGCGTTG 2265 ||||||||||| ||||| ||||||||||||||||| || || |||||||||||||||||| Sbjct 2247 AAGGAGTTAGGCCATGTTGTGGCGGTTACTGGAGACGGGACCAACGATGCACCAGCGTTG 2306 Query 2266 AAAGAAGCTGATATTGGACTTTCTATGGGGATTCAAGGTACGGAAGTAGCGAAAGAGAGC 2325 |||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| Sbjct 2307 AAAGAAGCTGATATTGGACTTTCTATGGGGATTCAAGGCACAGAAGTTGCGAAAGAGAGC 2366 Query 2326 TCAGATATCGTGATTCTTGACGATAACTTTGCTTCTGTTGCAACGGTTTTGAAATGGGGA 2385 || ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 2367 TCTGATATTGTGATTCTTGACGATAACTTCGCCTCTGTTGCAACGGTTTTGAAATGGGGA 2426 Query 2386 AGATGCGTGTACAACAATATTCAGAAGTTTATTCAGTTTCAGCTCACTGTCAATGTAGCT 2445 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 2427 AGATGCGTGTACAACAATATTCAGAAGTTCATTCAGTTTCAGCTCACTGTCAATGTGGCT 2486 Query 2446 GCTCTAGTGATCAACTTCGTGGCTGCAGTTTCAGCTGGAGACGTTCCTTTGACAGCGGTT 2505 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2487 GCTCTAGTGATCAACTTCGTGGCTGCAGTTTCAGCCGGAGACGTTCCTTTGACAGCGGTT 2546 Query 2506 CAGTTACTGTGGGTTAATCTGATCATGGACACACTCGGTGCATTGGCTTTAGCTACAGAG 2565 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2547 CAGTTACTGTGGGTTAATCTGATCATGGACACACTCGGTGCATTGGCTCTAGCTACAGAG 2606 Query 2566 AAGCCAACAAACGATCTTATGAAGAAGAAACCGATAGGGAGAGTGGCGCCATTGATCACA 2625 || |||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||| Sbjct 2607 AAACCAACAAATGATCTGATGAAGAAGAAACCAATAGGGAGAGTCGCGCCATTGATCACA 2666 Query 2626 AACATCATGTGGAGGAATCTACTAGCTCAAGCGTTTTACCAAATCTCTGTGCTCTTGGTG 2685 |||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||| Sbjct 2667 AACATCATGTGGAGGAATCTACTAGCTCAATCGTTTTATCAGATCTCTGTGCTCTTGGTG 2726 Query 2686 CTTCAGTTTAGAGGAAGATCGATTTTCAACGTGACTGAGAAAGTGAAGAACACTTTGATC 2745 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 2727 CTTCAGTTTAGAGGAAGGTCGATTTTCGACGTGACTGAGAAAGTGAAGAACACTTTGATC 2786 Query 2746 TTCAATACATTTGTGCTTTGTCAGGTGTTCAACGAGTTTAACGCTAGGAGTTTGGAGAAG 2805 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2787 TTCAATACCTTTGTGCTTTGTCAGGTGTTCAACGAGTTTAACGCCAGGAGTTTGGAGAAG 2846 Query 2806 AAGAATGTGTTTAAAGGG-TTACACAAGAACAGACTCTTCATTGGAATTATAGTTGTGAC 2864 ||||||||||| || ||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct 2847 AAGAATGTGTTCAA-GGGCTTACACAAGAACAGGCTCTTCATTGGGATTATAGTTGTGAC 2905 Query 2865 TGTGGTTTTGCAAGTTGTGATGGTTGAGTTTCTCAAGAGATTTGCTGATACAGAGAGGCT 2924 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2906 TGTGGTTTTGCAAGTTGTAATGGTTGAGTTTCTCAAGAGATTTGCTGATACAGAGAGGCT 2965 Query 2925 AAACTTGGGTCAATGGGGAGTTTGCATTGCCATCGCAGCTGCATCGTGGCCGATTGGATG 2984 ||| |||||||||||||||||||||||||| || || ||||| ||||||||||||||||| Sbjct 2966 AAATTTGGGTCAATGGGGAGTTTGCATTGCGATTGCGGCTGCGTCGTGGCCGATTGGATG 3025 Query 2985 GTTAGTGAAGTCTGTTCCGGTTCCAGAGAGACACTTCTTTAGCTACCTGAAATGGAAGAA 3044 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 3026 GTTAGTGAAGTCTGTTCCAGTTCCAGAGAGACACTTCTTTAGCTACCTGAAATGGAAGAA 3085 Query 3045 GAGATCATGA 3054 |||||||||| Sbjct 3086 GAGATCATGA 3095 > Ahg486176 jgi|Araly1|486176|fgenesh2_kg.5__2168__AT3G57330.1 Length=3263 Score = 89.8 bits (48), Expect = 1e-16 Identities = 141/185 (76%), Gaps = 10/185 (5%) Strand=Plus/Plus Query 2379 ATGGGGAAGATGC-GTGTACAACAATATTCAGAAGTTTATTCAGTTTCAGCTCACTGTCA 2437 ||||||| | ||| ||||| | || || ||||||||| ||||||| ||||| ||||| | Sbjct 2376 ATGGGGACG-TGCTGTGTATATTAACATCCAGAAGTTTGTTCAGTTCCAGCTAACTGTTA 2434 Query 2438 ATGTAGCTGCTCTAG-TGATCAACTTCGTGGCTGC-AGTTTCAGCTGGAGAC-GTTCCTT 2494 |||| | |||| | | | |||||||| || |||| | ||| | |||| | | || Sbjct 2435 ATGTTGTTGCT-TTGATCATCAACTTTGTCTCTGCTTGCATCA-CCGGAG-CTGCGCCAC 2491 Query 2495 TGACAGCGGTTCAGTTACTGTGGGTTAATC-TGATCATGGACACACTCGGTGCATTGGCT 2553 | || || || || |||| ||||| || | ||||||||||||||||||||||||||||| Sbjct 2492 TCACTGCAGTGCAACTACTTTGGGTGAA-CATGATCATGGACACACTCGGTGCATTGGCT 2550 Query 2554 TTAGC 2558 |||| Sbjct 2551 CTAGC 2555 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 115337261860 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5