BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G22920.1

Length=699
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg342434 jgi|Araly1|342434|fgenesh1_pg.C_scaffold_3002197           739    0.0  


> Ahg342434 jgi|Araly1|342434|fgenesh1_pg.C_scaffold_3002197
Length=537

 Score =  739 bits (400),  Expect = 0.0
 Identities = 462/493 (94%), Gaps = 0/493 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTAACCCTAAAGTTTTCTTTGATTTGACCGTGGATGGCAAACCCGCTGGTCGGATC  60
            |||||||||||||||||||||||||||||||| || ||||  ||||||||||||||||||
Sbjct  1    ATGGCTAACCCTAAAGTTTTCTTTGATTTGACTGTTGATGAAAAACCCGCTGGTCGGATC  60

Query  61   GTGATAGAGCTCTTCGCTGACTTGACTCCACGGACGGCGGAGAACTTCAGGGGTCTGTGT  120
            ||||||||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||
Sbjct  61   GTGATAGAGCTCTTCGCCGACTTGACTCCGCGGACGGCAGAGAACTTCAGGGCTCTGTGT  120

Query  121  ACCGGCGAGAGAGGCATCGGAAAGTGTGGTAAACCAATCCACTACAAAGGATCAACCTTC  180
            |||||||||||||||||||||||||||||||||||| | ||||| |||||||||| ||||
Sbjct  121  ACCGGCGAGAGAGGCATCGGAAAGTGTGGTAAACCACTGCACTATAAAGGATCAATCTTC  180

Query  181  GACCATATTGTTCCCGATCTCATGTGGTGTGGAGGAGATATCATCTTCGAAAACGAACCC  240
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct  181  GACGATATTGTTCCCGATCTCATGTGGTGTGGAGGAGATATCATCTTCGAAAACGAATCA  240

Query  241  ATCCACAGCGAAGAATTAGACGACGAGTACTTTATCTTGAACCACGAAGACGGTCCAGGT  300
            |||||| ||||||||||||| ||||||||||| ||| ||||||||||||| |||||||||
Sbjct  241  ATCCACGGCGAAGAATTAGAAGACGAGTACTTCATCCTGAACCACGAAGATGGTCCAGGT  300

Query  301  ATCATCTCCATGGCCGACTCCAACGGATCTCAGTTCCAAATCCACATGAAGGACTATGGC  360
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  301  ATCATCTCCATGGCCGACTCCACCGGATCTCAGTTCCAAATCCACATGAAGGACTATGGC  360

Query  361  TTGCAAGTGGACGGTGATCACGTTGTGATCGGCAAAGTTGTTGAAGGATTGGATCTTATG  420
             |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct  361  GTGCAAGTGGACGGTGATCACGTTGTGTTTGGCAAAGTTGTTGAAGGATTGGATCTTATG  420

Query  421  AGGAACATTGAGAAGGAGGTCATAACTACGACAACAAGGACGCCTTCAAAGCCTGTGGTG  480
            |||| ||||||||||||||| |||| ||| ||||| ||||||||||| ||||| ||||||
Sbjct  421  AGGAGCATTGAGAAGGAGGTTATAAGTACAACAACGAGGACGCCTTCCAAGCCCGTGGTG  480

Query  481  ATCGCGGACTGCG  493
            |||||||||||||
Sbjct  481  ATCGCGGACTGCG  493



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25694846058


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5