BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G22930.1 Length=821 Score E Sequences producing significant alignments: (Bits) Value Ahg479802 jgi|Araly1|479802|fgenesh2_kg.3__2503__AT3G22930.1 1022 0.0 Ahg330049 jgi|Araly1|330049|fgenesh1_pm.C_scaffold_7002276 499 1e-140 > Ahg479802 jgi|Araly1|479802|fgenesh2_kg.3__2503__AT3G22930.1 Length=764 Score = 1022 bits (553), Expect = 0.0 Identities = 627/662 (95%), Gaps = 8/662 (1%) Strand=Plus/Plus Query 145 caacaacaacaacaacaacaacaacaacaaGAACTGACGCAAGAACAGATAATGGAGTTC 204 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 106 CAACAACAACAACAACAACAACAACAACAAGAACTGACGCAAGAACAGATAATGGAGTTT 165 Query 205 AAAGAGGCTTTTTGTCTATTCGACAAAGATGGTGATGGATGCATCACTGCTGATGAACTT 264 |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 166 AAAGAGGCCTTTTGTCTCTTCGACAAAGATGGTGATGGTTGCATCACTGCTGATGAACTT 225 Query 265 GCCACTGTGATCCGCTCATTGGATCAGAACCCTACCGAGCAAGAACTTCAAGATATGATC 324 |||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||| Sbjct 226 GCCACTGTGATCCGCTCATTGGATCAGAACCCGACCGAACAAGAACTTCGAGATATGATC 285 Query 325 ACTGAGATCGACTCCGATGGCAACGGCACCATCGAATTTTCGGAGTTTCTCAACCTCATG 384 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 286 ACTGAGATCGACTCTGATGGCAACGGCACCATCGAATTCTCGGAGTTTCTCAACCTCATG 345 Query 385 GCTAACCAACTCCAGGAAACTGATGCAGATGAAGAGCTGAAAGAAGCATTCAAAGTGTTT 444 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 346 GCTAACCAAATCCAGGAAACTGATGCAGATGAAGAGCTGAAAGAAGCATTCAAAGTGTTT 405 Query 445 GACAAAGACCAAAATGGTTACATCTCTGCCAGTGAGTTGAGGCATGTGATGATTAATCTT 504 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 406 GACAAAGACCAAAATGGTTACATATCTGCCAGTGAGTTGAGGCATGTGATGATCAATCTT 465 Query 505 GGGGAGAAGCTAACAGATGAAGAGGTTGATCAAATGATAAAAGAGGCAGATTTGGATGGT 564 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 466 GGGGAGAAGCTTACAGATGAAGAGGTTGATCAAATGATAAAGGAGGCAGATTTGGATGGT 525 Query 565 GATGGCCAAGTCAATTATGATGAATTTGTCAGGATGATGATGATCAATGGTTAAAAAATC 624 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 526 GATGGCCAAGTCAATTATGATGAATTTGTCAGGATGATGATGACCAATGGTTAAA---TC 582 Query 625 CTAA-TCATTTTTACTCTTCATTGTATTATC-TTTT-ATAAATTTGTTTAATCCTTCTTC 681 ||| ||| ||||||||| ||||||||||| |||| ||||||| ||||||||||| || Sbjct 583 GTAAATCAATTTTACTCTCCATTGTATTATTATTTTTATAAATTGGTTTAATCCTTTTTT 642 Query 682 TT-TTTTCGGAATATCGCATTATAAATTAATCTTAAGCTTTTATATTCAATTGAACAAGT 740 || |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 643 TTCTTTTCGGAATATCGCATTTTAAATTAATTTTAAGCTTTTATATTCAATTGAACAAGT 702 Query 741 AGATTTTTCTTTTAGGCGTGTGGATTCTTACTATGTATCTGATGTATAGTGTGTTTCTTT 800 ||||||||||||| ||| |||| ||||||| ||||||||||||||||||||||||||||| Sbjct 703 AGATTTTTCTTTT-GGCATGTGAATTCTTAATATGTATCTGATGTATAGTGTGTTTCTTT 761 Query 801 CA 802 || Sbjct 762 CA 763 Score = 204 bits (110), Expect = 1e-51 Identities = 132/142 (93%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 1 ACTTCAAAGCTTTTCAGctctctctcttctcttctcttctcttctcttctcttctctttt 60 |||||||||||||| || ||||||| |||||||| |||||||||||||||||||||| | Sbjct 1 ACTTCAAAGCTTTTAAG--CTCTCTC-TCTCTTCTTTTCTCTTCTCTTCTCTTCTCTTCT 57 Query 61 ctctctGAAGAAGACTACTAAGCAAGTTTTAATTGGATGGAAGAAATTcaacaacaacaa 120 ||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 58 CTCTCAGAAGAATACTACTAAGCAAGTTTTAATTGGATGGAAGAAACTCAACAACAACAA 117 Query 121 caacaacaacaacaacaacaac 142 |||||||||||||||||| ||| Sbjct 118 CAACAACAACAACAACAAGAAC 139 > Ahg330049 jgi|Araly1|330049|fgenesh1_pm.C_scaffold_7002276 Length=465 Score = 499 bits (270), Expect = 1e-140 Identities = 378/431 (88%), Gaps = 4/431 (1%) Strand=Plus/Plus Query 177 ACTGACGCAAGAACAGAT-AATGGAGTTCAAAGAGGCTTTTTGTCTATTCGACAAAGATG 235 |||||| |||| ||||| | | ||||||||||| || |||||||| ||||||||||| | Sbjct 24 ACTGACAAAAGATCAGATCACT-GAGTTCAAAGAAGCCTTTTGTCTCTTCGACAAAGACG 82 Query 236 GTGATGGATGCATCACTGCT-GATGAACTTGCCACTGTGATCCGCTCATTGGATCAGAAC 294 | || || || || || | | || |||||||| || |||||||| || ||||||||||| Sbjct 83 GCGACGGTTGTATAAC-GGTGGAAGAACTTGCAACAGTGATCCGTTCGTTGGATCAGAAT 141 Query 295 CCTACCGAGCAAGAACTTCAAGATATGATCACTGAGATCGACTCCGATGGCAACGGCACC 354 || || || ||||||||||||||||| |||||||||||||| || ||| ||||||||||| Sbjct 142 CCGACAGAACAAGAACTTCAAGATATCATCACTGAGATCGATTCTGATAGCAACGGCACC 201 Query 355 ATCGAATTTTCGGAGTTTCTCAACCTCATGGCTAACCAACTCCAGGAAACTGATGCAGAT 414 || |||||| | |||||||||||||||||||| || |||| ||||||| |||||| || Sbjct 202 ATTGAATTTGCTGAGTTTCTCAACCTCATGGCCAAAAAACTTCAGGAAAGTGATGCTGAG 261 Query 415 GAAGAGCTGAAAGAAGCATTCAAAGTGTTTGACAAAGACCAAAATGGTTACATCTCTGCC 474 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 262 GAAGAGCTGAAAGAAGCATTCAAAGTCTTTGACAAAGACCAAAATGGTTATATCTCTGCC 321 Query 475 AGTGAGTTGAGGCATGTGATGATTAATCTTGGGGAGAAGCTAACAGATGAAGAGGTTGAT 534 |||||||| || ||||| ||||| ||||| ||||| ||||||||||||||||| ||||| Sbjct 322 AGTGAGTTAAGTCATGTAATGATAAATCTAGGGGAAAAGCTAACAGATGAAGAAGTTGAA 381 Query 535 CAAATGATAAAAGAGGCAGATTTGGATGGTGATGGCCAAGTCAATTATGATGAATTTGTC 594 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 382 CAAATGATAAAGGAGGCAGATTTGGATGGTGATGGCCAAGTCAATTATGATGAATTTGTC 441 Query 595 AGGATGATGAT 605 | ||||||||| Sbjct 442 AAGATGATGAT 452 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30345841932 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5