BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22930.1
Length=821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479802 jgi|Araly1|479802|fgenesh2_kg.3__2503__AT3G22930.1 1022 0.0
Ahg330049 jgi|Araly1|330049|fgenesh1_pm.C_scaffold_7002276 499 1e-140
> Ahg479802 jgi|Araly1|479802|fgenesh2_kg.3__2503__AT3G22930.1
Length=764
Score = 1022 bits (553), Expect = 0.0
Identities = 627/662 (95%), Gaps = 8/662 (1%)
Strand=Plus/Plus
Query 145 caacaacaacaacaacaacaacaacaacaaGAACTGACGCAAGAACAGATAATGGAGTTC 204
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 CAACAACAACAACAACAACAACAACAACAAGAACTGACGCAAGAACAGATAATGGAGTTT 165
Query 205 AAAGAGGCTTTTTGTCTATTCGACAAAGATGGTGATGGATGCATCACTGCTGATGAACTT 264
|||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 166 AAAGAGGCCTTTTGTCTCTTCGACAAAGATGGTGATGGTTGCATCACTGCTGATGAACTT 225
Query 265 GCCACTGTGATCCGCTCATTGGATCAGAACCCTACCGAGCAAGAACTTCAAGATATGATC 324
|||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct 226 GCCACTGTGATCCGCTCATTGGATCAGAACCCGACCGAACAAGAACTTCGAGATATGATC 285
Query 325 ACTGAGATCGACTCCGATGGCAACGGCACCATCGAATTTTCGGAGTTTCTCAACCTCATG 384
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 286 ACTGAGATCGACTCTGATGGCAACGGCACCATCGAATTCTCGGAGTTTCTCAACCTCATG 345
Query 385 GCTAACCAACTCCAGGAAACTGATGCAGATGAAGAGCTGAAAGAAGCATTCAAAGTGTTT 444
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GCTAACCAAATCCAGGAAACTGATGCAGATGAAGAGCTGAAAGAAGCATTCAAAGTGTTT 405
Query 445 GACAAAGACCAAAATGGTTACATCTCTGCCAGTGAGTTGAGGCATGTGATGATTAATCTT 504
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 406 GACAAAGACCAAAATGGTTACATATCTGCCAGTGAGTTGAGGCATGTGATGATCAATCTT 465
Query 505 GGGGAGAAGCTAACAGATGAAGAGGTTGATCAAATGATAAAAGAGGCAGATTTGGATGGT 564
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 466 GGGGAGAAGCTTACAGATGAAGAGGTTGATCAAATGATAAAGGAGGCAGATTTGGATGGT 525
Query 565 GATGGCCAAGTCAATTATGATGAATTTGTCAGGATGATGATGATCAATGGTTAAAAAATC 624
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 526 GATGGCCAAGTCAATTATGATGAATTTGTCAGGATGATGATGACCAATGGTTAAA---TC 582
Query 625 CTAA-TCATTTTTACTCTTCATTGTATTATC-TTTT-ATAAATTTGTTTAATCCTTCTTC 681
||| ||| ||||||||| ||||||||||| |||| ||||||| ||||||||||| ||
Sbjct 583 GTAAATCAATTTTACTCTCCATTGTATTATTATTTTTATAAATTGGTTTAATCCTTTTTT 642
Query 682 TT-TTTTCGGAATATCGCATTATAAATTAATCTTAAGCTTTTATATTCAATTGAACAAGT 740
|| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 643 TTCTTTTCGGAATATCGCATTTTAAATTAATTTTAAGCTTTTATATTCAATTGAACAAGT 702
Query 741 AGATTTTTCTTTTAGGCGTGTGGATTCTTACTATGTATCTGATGTATAGTGTGTTTCTTT 800
||||||||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 703 AGATTTTTCTTTT-GGCATGTGAATTCTTAATATGTATCTGATGTATAGTGTGTTTCTTT 761
Query 801 CA 802
||
Sbjct 762 CA 763
Score = 204 bits (110), Expect = 1e-51
Identities = 132/142 (93%), Gaps = 3/142 (2%)
Strand=Plus/Plus
Query 1 ACTTCAAAGCTTTTCAGctctctctcttctcttctcttctcttctcttctcttctctttt 60
|||||||||||||| || ||||||| |||||||| |||||||||||||||||||||| |
Sbjct 1 ACTTCAAAGCTTTTAAG--CTCTCTC-TCTCTTCTTTTCTCTTCTCTTCTCTTCTCTTCT 57
Query 61 ctctctGAAGAAGACTACTAAGCAAGTTTTAATTGGATGGAAGAAATTcaacaacaacaa 120
||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 58 CTCTCAGAAGAATACTACTAAGCAAGTTTTAATTGGATGGAAGAAACTCAACAACAACAA 117
Query 121 caacaacaacaacaacaacaac 142
|||||||||||||||||| |||
Sbjct 118 CAACAACAACAACAACAAGAAC 139
> Ahg330049 jgi|Araly1|330049|fgenesh1_pm.C_scaffold_7002276
Length=465
Score = 499 bits (270), Expect = 1e-140
Identities = 378/431 (88%), Gaps = 4/431 (1%)
Strand=Plus/Plus
Query 177 ACTGACGCAAGAACAGAT-AATGGAGTTCAAAGAGGCTTTTTGTCTATTCGACAAAGATG 235
|||||| |||| ||||| | | ||||||||||| || |||||||| ||||||||||| |
Sbjct 24 ACTGACAAAAGATCAGATCACT-GAGTTCAAAGAAGCCTTTTGTCTCTTCGACAAAGACG 82
Query 236 GTGATGGATGCATCACTGCT-GATGAACTTGCCACTGTGATCCGCTCATTGGATCAGAAC 294
| || || || || || | | || |||||||| || |||||||| || |||||||||||
Sbjct 83 GCGACGGTTGTATAAC-GGTGGAAGAACTTGCAACAGTGATCCGTTCGTTGGATCAGAAT 141
Query 295 CCTACCGAGCAAGAACTTCAAGATATGATCACTGAGATCGACTCCGATGGCAACGGCACC 354
|| || || ||||||||||||||||| |||||||||||||| || ||| |||||||||||
Sbjct 142 CCGACAGAACAAGAACTTCAAGATATCATCACTGAGATCGATTCTGATAGCAACGGCACC 201
Query 355 ATCGAATTTTCGGAGTTTCTCAACCTCATGGCTAACCAACTCCAGGAAACTGATGCAGAT 414
|| |||||| | |||||||||||||||||||| || |||| ||||||| |||||| ||
Sbjct 202 ATTGAATTTGCTGAGTTTCTCAACCTCATGGCCAAAAAACTTCAGGAAAGTGATGCTGAG 261
Query 415 GAAGAGCTGAAAGAAGCATTCAAAGTGTTTGACAAAGACCAAAATGGTTACATCTCTGCC 474
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 262 GAAGAGCTGAAAGAAGCATTCAAAGTCTTTGACAAAGACCAAAATGGTTATATCTCTGCC 321
Query 475 AGTGAGTTGAGGCATGTGATGATTAATCTTGGGGAGAAGCTAACAGATGAAGAGGTTGAT 534
|||||||| || ||||| ||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct 322 AGTGAGTTAAGTCATGTAATGATAAATCTAGGGGAAAAGCTAACAGATGAAGAAGTTGAA 381
Query 535 CAAATGATAAAAGAGGCAGATTTGGATGGTGATGGCCAAGTCAATTATGATGAATTTGTC 594
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 CAAATGATAAAGGAGGCAGATTTGGATGGTGATGGCCAAGTCAATTATGATGAATTTGTC 441
Query 595 AGGATGATGAT 605
| |||||||||
Sbjct 442 AAGATGATGAT 452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30345841932
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5