BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22942.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905333 jgi|Araly1|905333|Al_scaffold_0003_2461 510 7e-144
> Ahg905333 jgi|Araly1|905333|Al_scaffold_0003_2461
Length=303
Score = 510 bits (276), Expect = 7e-144
Identities = 295/304 (97%), Gaps = 2/304 (1%)
Strand=Plus/Plus
Query 286 ATGGAAGCGGGTAGCTCCAATTCGTCGGGTCAGCTATCCGGGCGGGTCGTTGATACAAGA 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGCGGGTAGCTCCAATTCGTCGGGTCAGCTATCCGGGCGGGTCGTTGATACAAGA 60
Query 346 GGCAAACACAGGATTCAAGCTGAACTCAAAAGGCTTGAACAAGAAGCTCGATTCTTAGAG 405
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCAAACATAGGATTCAAGCTGAACTCAAAAGGCTTGAACAAGAAGCTCGATTCTTAGAG 120
Query 406 GAAGAGCTGGAGCAGCTTGAGAAGATGGACAATGCATCAGCATCCTGCAAAGAGTTCTTA 465
|| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 121 GACGAGCTGGAGCAGCTTGAAAAGATGGACAATGCATCAGCGTCATGCAAAGAGTTCTTA 180
Query 466 GACAGTGTTGACAGCAAACCCGATCCTCTTCTTCCCGAAACAACAGGTCCGGTGAATG-C 524
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 GACAGTGTTGAGAGCAAACCCGATCCTCTTCTTCCCGAAACAACAGGTCCGGTGAATGAC 240
Query 525 GACATGGGATCAATGGTTCGAAGGCCCTAAAGAAGCAAAACGATGTGGCTGCTCCATTCT 584
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 -ACATGGGATCAATGGTTCGAAGGCCCTAAAGAAGCTAAACGATGTGGCTGCTCCATTCT 299
Query 585 TTGA 588
||||
Sbjct 300 TTGA 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5