BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22950.1
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930294 jgi|Araly1|930294|scaffold_302751.1 933 0.0
Ahg952131 jgi|Araly1|952131|scaffold_39600002.1 928 0.0
> Ahg930294 jgi|Araly1|930294|scaffold_302751.1
Length=592
Score = 933 bits (505), Expect = 0.0
Identities = 546/566 (96%), Gaps = 2/566 (0%)
Strand=Plus/Plus
Query 250 GAG-GAGATGGGAGCATTCATGTCGAGGTTTTGGTTCATGATGTTTCCTGCAAAAGAGTA 308
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 GAGAGAGATGGGAGCATTCATGTCGAGGTTTTGGTTCATGATGTTTCCTGCAAAAGAGTA 73
Query 309 TAAGATTGTTGTTGTTGGTTTGGATAATGCTGGTAAAACGACGACGCTTTATAAACTTCA 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 TAAGATTGTTGTTGTTGGTTTGGATAATGCTGGTAAAACGACGACGCTTTATAAACTTCA 133
Query 369 TTTGGGTGAAGTTGTTACTACTCATCCTACTGTTGGTAGCAATGTTGAAGAGCTTGTCTA 428
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 134 TTTGGGTGAAGTTGTTACTACTCATCCTACTGTTGGGAGCAATGTTGAAGAGCTTGTTTA 193
Query 429 CAAGAATATTCGCTTTGAGGTATGGGATCTTGGTGGGCAAGATAGGCTAAGAACTTCATG 488
||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 194 CAAGAATATCCGCTTCGAGGTTTGGGATCTTGGTGGGCAAGATAGGCTAAGAACTTCATG 253
Query 489 GGCAACATACTATCGTGGAACACATGCTGTGATTGTGGTTATAGATAGCACAGACAGAGC 548
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 254 GGCAACATACTATCGCGGAACACATGCTGTGATTGTGGTTATCGATAGCACAGACAGAGC 313
Query 549 CAGAATCTCTTTCATGAAAGATGAGCTAGCCAGGTTACTTGGTCATGAGGATCTTCAAAA 608
||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 314 CAGAATCTCTTTCATGAAAGATGAGTTCGCCAGGTTACTTGGTCACGAGGATCTTCAAAA 373
Query 609 CTCGGTCATACTAGTTTTTGCAAACAAACAGGATCTGAAAGACGCAATGACTCCTGCTGA 668
|||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 374 CTCGGTCATACTTGTGTTTGCAAACAAACAGGATCTGAAAGATGCGATGACTCCTGCTGA 433
Query 669 GATCACGGATGCACTTAACCTTCACAGTATCAAGAACCATGATTGGCATATTCAAGCAAG 728
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 434 GATCACGGATGCACTTAACCTTCACAGTATTAAGAACCATGATTGGCATATTCAAGCAAG 493
Query 729 TTGTGCGGTTACTGGAGAAGGATTGTATGATGGGCTCGGTTGGATTGCCCAAAAAGTTAC 788
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 494 TTGTGCAGTTACTGGAGAAGGATTGTACGATGGGCTTGGTTGGATTGCCCAAAAAGTTAC 553
Query 789 CGGTAAAGCCACGAGTTAAGGGGAAA 814
|||||||||||||||||||||| |||
Sbjct 554 CGGTAAAGCCACGAGTTAAGGG-AAA 578
> Ahg952131 jgi|Araly1|952131|scaffold_39600002.1
Length=592
Score = 928 bits (502), Expect = 0.0
Identities = 545/566 (96%), Gaps = 2/566 (0%)
Strand=Plus/Plus
Query 250 GAG-GAGATGGGAGCATTCATGTCGAGGTTTTGGTTCATGATGTTTCCTGCAAAAGAGTA 308
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 14 GAGAGAGATGGGAGCATTCATGTCAAGGTTTTGGTTCATGATGTTTCCTGCAAAAGAGTA 73
Query 309 TAAGATTGTTGTTGTTGGTTTGGATAATGCTGGTAAAACGACGACGCTTTATAAACTTCA 368
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 TAAGATTGTTGTGGTTGGTTTGGATAATGCTGGTAAAACGACGACGCTTTATAAACTTCA 133
Query 369 TTTGGGTGAAGTTGTTACTACTCATCCTACTGTTGGTAGCAATGTTGAAGAGCTTGTCTA 428
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 134 TTTGGGTGAAGTTGTTACTACTCATCCTACTGTTGGGAGCAATGTTGAAGAGCTTGTTTA 193
Query 429 CAAGAATATTCGCTTTGAGGTATGGGATCTTGGTGGGCAAGATAGGCTAAGAACTTCATG 488
||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 194 CAAGAATATCCGCTTCGAGGTTTGGGATCTTGGTGGGCAAGATAGGCTAAGAACTTCATG 253
Query 489 GGCAACATACTATCGTGGAACACATGCTGTGATTGTGGTTATAGATAGCACAGACAGAGC 548
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 254 GGCAACATACTATCGCGGAACACATGCTGTGATTGTGGTTATCGATAGCACAGACAGAGC 313
Query 549 CAGAATCTCTTTCATGAAAGATGAGCTAGCCAGGTTACTTGGTCATGAGGATCTTCAAAA 608
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 314 CAGAATCTCTTTCATGAAAGATGAGCTCGCCAGGTTACTTGGTCACGAGGATCTTCAAAA 373
Query 609 CTCGGTCATACTAGTTTTTGCAAACAAACAGGATCTGAAAGACGCAATGACTCCTGCTGA 668
|||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 374 CTCGGTCATACTTGTGTTTGCAAACAAACAGGATCTGAAAGATGCGATGACTCCTGCTGA 433
Query 669 GATCACGGATGCACTTAACCTTCACAGTATCAAGAACCATGATTGGCATATTCAAGCAAG 728
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 434 GATCACGGATGCACTTAACCTTCACAGTATTAAGAACCATGATTGGCATATTCAAGCAAG 493
Query 729 TTGTGCGGTTACTGGAGAAGGATTGTATGATGGGCTCGGTTGGATTGCCCAAAAAGTTAC 788
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 494 TTGTGCAGTTACTGGAGAAGGATTGTACGATGGGCTTGGTTGGATTGCCCAAAAAGTTAC 553
Query 789 CGGTAAAGCCACGAGTTAAGGGGAAA 814
|||||||||||||||||||||| |||
Sbjct 554 CGGTAAAGCCACGAGTTAAGGG-AAA 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36750491988
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5