BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G22950.1 Length=989 Score E Sequences producing significant alignments: (Bits) Value Ahg930294 jgi|Araly1|930294|scaffold_302751.1 933 0.0 Ahg952131 jgi|Araly1|952131|scaffold_39600002.1 928 0.0 > Ahg930294 jgi|Araly1|930294|scaffold_302751.1 Length=592 Score = 933 bits (505), Expect = 0.0 Identities = 546/566 (96%), Gaps = 2/566 (0%) Strand=Plus/Plus Query 250 GAG-GAGATGGGAGCATTCATGTCGAGGTTTTGGTTCATGATGTTTCCTGCAAAAGAGTA 308 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14 GAGAGAGATGGGAGCATTCATGTCGAGGTTTTGGTTCATGATGTTTCCTGCAAAAGAGTA 73 Query 309 TAAGATTGTTGTTGTTGGTTTGGATAATGCTGGTAAAACGACGACGCTTTATAAACTTCA 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 74 TAAGATTGTTGTTGTTGGTTTGGATAATGCTGGTAAAACGACGACGCTTTATAAACTTCA 133 Query 369 TTTGGGTGAAGTTGTTACTACTCATCCTACTGTTGGTAGCAATGTTGAAGAGCTTGTCTA 428 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 134 TTTGGGTGAAGTTGTTACTACTCATCCTACTGTTGGGAGCAATGTTGAAGAGCTTGTTTA 193 Query 429 CAAGAATATTCGCTTTGAGGTATGGGATCTTGGTGGGCAAGATAGGCTAAGAACTTCATG 488 ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 194 CAAGAATATCCGCTTCGAGGTTTGGGATCTTGGTGGGCAAGATAGGCTAAGAACTTCATG 253 Query 489 GGCAACATACTATCGTGGAACACATGCTGTGATTGTGGTTATAGATAGCACAGACAGAGC 548 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 254 GGCAACATACTATCGCGGAACACATGCTGTGATTGTGGTTATCGATAGCACAGACAGAGC 313 Query 549 CAGAATCTCTTTCATGAAAGATGAGCTAGCCAGGTTACTTGGTCATGAGGATCTTCAAAA 608 ||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| Sbjct 314 CAGAATCTCTTTCATGAAAGATGAGTTCGCCAGGTTACTTGGTCACGAGGATCTTCAAAA 373 Query 609 CTCGGTCATACTAGTTTTTGCAAACAAACAGGATCTGAAAGACGCAATGACTCCTGCTGA 668 |||||||||||| || |||||||||||||||||||||||||| || |||||||||||||| Sbjct 374 CTCGGTCATACTTGTGTTTGCAAACAAACAGGATCTGAAAGATGCGATGACTCCTGCTGA 433 Query 669 GATCACGGATGCACTTAACCTTCACAGTATCAAGAACCATGATTGGCATATTCAAGCAAG 728 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 434 GATCACGGATGCACTTAACCTTCACAGTATTAAGAACCATGATTGGCATATTCAAGCAAG 493 Query 729 TTGTGCGGTTACTGGAGAAGGATTGTATGATGGGCTCGGTTGGATTGCCCAAAAAGTTAC 788 |||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 494 TTGTGCAGTTACTGGAGAAGGATTGTACGATGGGCTTGGTTGGATTGCCCAAAAAGTTAC 553 Query 789 CGGTAAAGCCACGAGTTAAGGGGAAA 814 |||||||||||||||||||||| ||| Sbjct 554 CGGTAAAGCCACGAGTTAAGGG-AAA 578 > Ahg952131 jgi|Araly1|952131|scaffold_39600002.1 Length=592 Score = 928 bits (502), Expect = 0.0 Identities = 545/566 (96%), Gaps = 2/566 (0%) Strand=Plus/Plus Query 250 GAG-GAGATGGGAGCATTCATGTCGAGGTTTTGGTTCATGATGTTTCCTGCAAAAGAGTA 308 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 14 GAGAGAGATGGGAGCATTCATGTCAAGGTTTTGGTTCATGATGTTTCCTGCAAAAGAGTA 73 Query 309 TAAGATTGTTGTTGTTGGTTTGGATAATGCTGGTAAAACGACGACGCTTTATAAACTTCA 368 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 74 TAAGATTGTTGTGGTTGGTTTGGATAATGCTGGTAAAACGACGACGCTTTATAAACTTCA 133 Query 369 TTTGGGTGAAGTTGTTACTACTCATCCTACTGTTGGTAGCAATGTTGAAGAGCTTGTCTA 428 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 134 TTTGGGTGAAGTTGTTACTACTCATCCTACTGTTGGGAGCAATGTTGAAGAGCTTGTTTA 193 Query 429 CAAGAATATTCGCTTTGAGGTATGGGATCTTGGTGGGCAAGATAGGCTAAGAACTTCATG 488 ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 194 CAAGAATATCCGCTTCGAGGTTTGGGATCTTGGTGGGCAAGATAGGCTAAGAACTTCATG 253 Query 489 GGCAACATACTATCGTGGAACACATGCTGTGATTGTGGTTATAGATAGCACAGACAGAGC 548 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 254 GGCAACATACTATCGCGGAACACATGCTGTGATTGTGGTTATCGATAGCACAGACAGAGC 313 Query 549 CAGAATCTCTTTCATGAAAGATGAGCTAGCCAGGTTACTTGGTCATGAGGATCTTCAAAA 608 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 314 CAGAATCTCTTTCATGAAAGATGAGCTCGCCAGGTTACTTGGTCACGAGGATCTTCAAAA 373 Query 609 CTCGGTCATACTAGTTTTTGCAAACAAACAGGATCTGAAAGACGCAATGACTCCTGCTGA 668 |||||||||||| || |||||||||||||||||||||||||| || |||||||||||||| Sbjct 374 CTCGGTCATACTTGTGTTTGCAAACAAACAGGATCTGAAAGATGCGATGACTCCTGCTGA 433 Query 669 GATCACGGATGCACTTAACCTTCACAGTATCAAGAACCATGATTGGCATATTCAAGCAAG 728 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 434 GATCACGGATGCACTTAACCTTCACAGTATTAAGAACCATGATTGGCATATTCAAGCAAG 493 Query 729 TTGTGCGGTTACTGGAGAAGGATTGTATGATGGGCTCGGTTGGATTGCCCAAAAAGTTAC 788 |||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 494 TTGTGCAGTTACTGGAGAAGGATTGTACGATGGGCTTGGTTGGATTGCCCAAAAAGTTAC 553 Query 789 CGGTAAAGCCACGAGTTAAGGGGAAA 814 |||||||||||||||||||||| ||| Sbjct 554 CGGTAAAGCCACGAGTTAAGGG-AAA 578 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36750491988 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5