BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22960.1
Length=2139
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479804 jgi|Araly1|479804|fgenesh2_kg.3__2505__AT3G22960.1 3258 0.0
> Ahg479804 jgi|Araly1|479804|fgenesh2_kg.3__2505__AT3G22960.1
Length=2081
Score = 3258 bits (1764), Expect = 0.0
Identities = 1994/2102 (95%), Gaps = 27/2102 (1%)
Strand=Plus/Plus
Query 27 AACACTCTCACACTTCGATATCTCCGCCTTCATTCTCCTCAGAGCCAACTGTCCTGAGAT 86
||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 1 AACACTCTCACACTTCGATATCTCCGCCTTC-TTCTCCTCTGAGCCAACTGTCCTTCGAT 59
Query 87 TTCGATTTCGATTTCTCCGATCTCTCTTCCTCCGTCGCCGGCGAAACCATGTCTCAGTCT 146
||||||||||||||||||||||||||| |||||| | |||||||||| ||||||||||||
Sbjct 60 TTCGATTTCGATTTCTCCGATCTCTCTCCCTCCGGCACCGGCGAAACTATGTCTCAGTCT 119
Query 147 ATTCAATTCTCCActccttcacacactcctcaccttctccatctccctcactcacaattc 206
|| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 120 ATCCAATTCTCCACTCCTTCACGCACTCCTCACCTTCTCAATCTCCCTCACTCACAATTC 179
Query 207 aaccgtcctctctcctctatctccttccGTCGCTTCCCTCTAACAACCATCAAATACACT 266
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 180 AACCGTCCTCTCTCCTCTATCTCCTTCCGTCGTTTCCCTCTAACAACCATCAAATACACT 239
Query 267 TCCATCAGAGCCT-C-C-TCGTCAT-CATCTCCTTCACCGGATCTCGATTCATCGTCCTC 322
||||||||||||| | | ||||| | | || ||||||||||||||||||||||| || ||
Sbjct 240 TCCATCAGAGCCTCCTCTTCGTC-TCCGTCGCCTTCACCGGATCTCGATTCATCATCATC 298
Query 323 ATCATCATCCTCGCAAGTACTTCTCTCACCTAACGGTACTGGTGCTGTGAAGTCTGATGA 382
|| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTCGTCGTCGTCGCAGGTACTTCTCTCACCTAACGGTACTGGTGCTGTGAAGTCTGATGA 358
Query 383 GAGATCCGTTGTCGCTACGGCGGTTACGACTGATACGTCTGGGATTGAGGTTGATACTGT 442
|||||||||||| |||||||| |||||||| |||||| ||||||||||||||||||| ||
Sbjct 359 GAGATCCGTTGTAGCTACGGCTGTTACGACGGATACGGCTGGGATTGAGGTTGATACGGT 418
Query 443 GACGGAAGCTGAGCTTAAGGAGAATGGATTTAGAAGTACGAGGAGGACGAAGCTGATCTG 502
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 419 GACGGAAGCGGAGCTTAAGGAGAATGGATTTAGAAGTACGAGAAGGACGAAGCTGATTTG 478
Query 503 TACGATCGGACCGGCGACTTGTGGATTTGAGCAGCTTGAGGCGCTTGCTGTGGGAGGTAT 562
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TACGATCGGACCGGCTACGTGTGGATTTGAGCAGCTTGAGGCGCTTGCTGTGGGAGGTAT 538
Query 563 GAATGTGGCAAGGCTTAATATGTGTCACGGTACGCGTGATTGGCACCGCGGTGTGATTCG 622
||| ||||| |||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 539 GAACGTGGCGCGGCTTAATATGTGTCACGGTACTCGCGATTGGCACCGCGGTGTGATTCG 598
Query 623 TAGTGTTCGGAGGCTTAATGAGGAGAAAGGCTTTGCGGTTGCTATTATGATGGATACTGA 682
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TAGTGTTCGTAGGCTTAATGAGGAGAAAGGCTTTGCGGTTGCTATTATGATGGATACTGA 658
Query 683 AGGTAGTGAGATTCATATGGGAGATCTTGGTGGTGAAGCTTCAGCTAAAGCAGAGGATGG 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGGTAGTGAGATTCATATGGGAGATCTTGGTGGTGAAGCTTCAGCTAAAGCAGAGGATGG 718
Query 743 TGAGGTTTGGACTTTCACTGTTAGAGCTTTTGATTCTTCTCGTCCTGAACGTACCATTAG 802
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGAGATTTGGACTTTCACTGTTAGAGCTTTTGATTCTTCTCGTCCTGAACGTACCATTAG 778
Query 803 TGTTAGCTACGATGGTTTCGCTGAAGATGTAAGAGTTGGGGATGAACTTTTGGTTGATGG 862
||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 779 TGTGAGCTACGATGGTTTCGCTGAAGATGTAAGAGTTGGGGATGAACTTCTAGTTGATGG 838
Query 863 TGGGATGGTGAGATTTGAAGTGATTGAGAAGATTGGTCCTGATGTTAAGTGTCTATGTAC 922
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGGAATGGTGAGATTTGAAGTGATTGAGAAGATTGGTCCTGATGTTAAGTGTCTATGTAC 898
Query 923 CGATCCTGGATTGTTGCTTCCTCGAGCTAACTTGACGTTTTGGAGAGATGGAAGTCTTGT 982
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CGATCCCGGATTGTTGCTTCCTCGAGCTAACTTGACGTTTTGGAGAGATGGAAGTCTTGT 958
Query 983 ACGAGAGCGTAATGCCATGCTTCCAACAATTTCTTCCAAGGACTGGTTGGATATTGATTT 1042
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 959 ACGAGAGCGTAATGCCATGCTTCCAACTATTTCTTCCAAGGATTGGTTGGATATTGATTT 1018
Query 1043 TGGAATTGCTGAAGGTGTGGATTTCATTGCTGTATCGTTTGTCAAGTCGGCTGAAGTCAT 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1019 TGGAATTGCTGAAGGTGTGGATTTCATTGCTGTATCGTTTGTCAAGTCGGCTGAAGTAAT 1078
Query 1103 TAATCACCTTAAAAGTTATCTTGCTGCTCGTTCCCGTGGAGGGGAAATTGGAGTGATTGC 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TAATCACCTTAAAAGTTATCTTGCTGCTCGTTCCCGTGGAGGGGAAATTGGAGTGATTGC 1138
Query 1163 AAAGATCGAGAGTATCGATTCACTGACCAATTTGGAAGAAATTATTCTAGCATCAGATGG 1222
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1139 AAAGATCGAGAGTATCGATTCATTGACCAATTTGGAAGAAATTATTCTAGCATCAGATGG 1198
Query 1223 GGCCATGGTTGCAAGAGGAGATCTGGGAGCTCAGATACCTCTTGAGCAAGTTCCAGCAGC 1282
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1199 AGCCATGGTTGCAAGAGGAGATCTAGGAGCTCAGATACCTCTTGAACAAGTTCCAGCAGC 1258
Query 1283 TCAACAGAGAATCGTCCAAGTATGCAGAGCTCTTAACAAACCCGTCATTGTCGCTTCACA 1342
||||||||||||||||||||| ||||||| || |||||||| ||||| |||||||||||
Sbjct 1259 TCAACAGAGAATCGTCCAAGTCTGCAGAGGGCTGAACAAACCTGTCATCGTCGCTTCACA 1318
Query 1343 GCTAT-TGGAGTCCATGATTGAGTACCCAACTCCAACCAGAGCAGAAGTTGCCGACGTGT 1401
||| | |||| |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1319 GCT-TCTGGAATCCATGATTGAGTACCCAACTCCAACCAGAGCAGAAGTCGCTGACGTGT 1377
Query 1402 CTGAAGCAGTAAGACAAAGATCAGATGCATTGATGCTCTCTGGAGAATCAGCTATGGGAC 1461
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1378 CTGAAGCAGTAAGACAAAGATCAGACGCATTGATGCTCTCTGGAGAATCAGCTATGGGTC 1437
Query 1462 AATTCCCAGACAAGGCGCTCACGGTTCTAAGGACTGTCAGTTTAAGAATCGAGAGATGGT 1521
|||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1438 AATTTCCAGACAAGGCGCTCACGGTTCTAAGGACTGTCAGTCTAAGAATCGAGCGATGGT 1497
Query 1522 GGAGGGAAGAGAAACGCCATGAGTCTGTACCGCTTCAAGCCATAGGCTCTTCATTTTCAG 1581
||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||
Sbjct 1498 GGAGGGAAGAGAAACGCCACGAGTCTGTGCCGCTTCAAGCCATAGGCTCTACATTTTCAG 1557
Query 1582 ACAAAATCTCAGAAGAGATCTGTAACTCAGCTGCTAAAATGGCTAACAATCTTGGAGTGG 1641
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1558 ACAAAATCTCAGAAGAGATCTGTAACTCTGCTGCTAAAATGGCTAACAATCTTGGAGTGG 1617
Query 1642 ACGCGGTTTTCGTTTACACAACGAGCGGACACATGGC-ATCACTGGTCTCCCGATGTCGC 1700
||||||||||||| |||||||| |||||||||||||| | || ||||||| |||||||||
Sbjct 1618 ACGCGGTTTTCGTCTACACAACAAGCGGACACATGGCGA-CATTGGTCTCACGATGTCGC 1676
Query 1701 CCGGACTGCCCGATCTTTGCTTTCACAACCACAACCTCAGTGAGAAGACGCTTAAACCTA 1760
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CCAGACTGTCCGATCTTTGCTTTCACAACCACAACCTCAGTGAGAAGACGCTTAAACCTA 1736
Query 1761 CAATGGGGACTTATCCCATTCCGTCTCAGCTTCTCAGACGACATGGAAAGCAACTTGAAC 1820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 CAATGGGGACTTATCCCATTCCGTCTCAGCTTCTCAGACGACATGGAAAGCAACTTGAAC 1796
Query 1821 AAAACATTCTCGTTACTGAAATCAAGAGGTATGATCAAATCTGGTGACCTCGTGATCGCA 1880
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1797 AAAACATTCTCGTTACTGAAATCAAGAGGTATGATAAAATCTGGTGACCTCGTGATCGCA 1856
Query 1881 GTCTCGGACATGCTGCAATCAATCCAGGTAATGAACGTCCCGTAATTCTCTCTCTTTATA 1940
||||| ||||||||||||||||||||||||||||||||||| ||||| |||| |||| ||
Sbjct 1857 GTCTCAGACATGCTGCAATCAATCCAGGTAATGAACGTCCCATAATT-TCTCCCTTTTTA 1915
Query 1941 CAATTTCGCAATCCCGCAAAAGAGTGTTTTGTTTCCTACTTTTGTTACTGTTTTTAGACT 2000
|||||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 1916 CAATTTCGCAATCCCGCAAA-GAGTGTTTTGTT----------G---CTGTTTTTAGACT 1961
Query 2001 ACTCTTACATTAGATTCCAGAGGCATCATCATCTTCGGTTTGTTAACAACAGTAATGTGT 2060
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1962 ACTCTTACATTAGATTCCAGAGGCATCGTCAACTTCGGTTTGTTAACAACAGTAATGTGT 2021
Query 2061 AAGCTTTGTTTGTAGTGTGTACTGTTTGTTTTTGGTTTTCAATAATATCAGTAATCTTAT 2120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2022 AAGCTTTGTTTGTAGTGT--ACTGTTTGTTTTTGGTTTTCAATAATATCAGTAATCTTCT 2079
Query 2121 TC 2122
||
Sbjct 2080 TC 2081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80484687685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5