BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22961.1
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905337 jgi|Araly1|905337|Al_scaffold_0003_2465 641 0.0
> Ahg905337 jgi|Araly1|905337|Al_scaffold_0003_2465
Length=612
Score = 641 bits (347), Expect = 0.0
Identities = 471/530 (89%), Gaps = 11/530 (2%)
Strand=Plus/Plus
Query 25 ATGAAGAATCAAGAGAGAGATTTTTATGAAACTCCGTCGGATTGTTCGGAAGAAGAGATT 84
||||||||||| |||| |||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1 ATGAAGAATCAGGAGATAGATTTTTATCAAACTCCGTCGGATTGTTCGGACGAAGAGATT 60
Query 85 CAACGGAGTTGCGAGTTCGTGAAAAAAGTTAAAGAGTTGGATGATAAGACAATCATCGTT 144
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CAACGAAGTTGCGAGTTTGTGAAAAAAGTGAAAGAGTTGGATGATAAGACAATCATCGTT 120
Query 145 AAATTTTTAAATGCAATGAAG-----TC-TTATCGATCTAAGTCTTTAAGTTACATCGAT 198
|||||| | |||||||||||| || ||||| ||||||||||||||| |||||||||
Sbjct 121 AAATTTGTCAATGCAATGAAGTCTTATCATTATCAATCTAAGTCTTTAAGCTACATCGAT 180
Query 199 CTCAAAACCAAAGTCGCTTCTATTCTTCGTAACCACGACGCTCTGCTCCAAGAATTCCAT 258
|||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||| ||
Sbjct 181 CTCAAAACCAAAGTCGCTTCCATTCTTCGTAATCACGACGTTTTGCTCCAAGAATTCTAT 240
Query 259 CAGCTTCTTCTATTAGATTCACCTATCACAGAGAAGGATTGTAACTCGGCAAAATCAGAC 318
||| |||||||| |||| ||||||||| |||||| |||||||||||||||||||||||
Sbjct 241 CAG---CTTCTATTGGATTTACCTATCACGGAGAAGAATTGTAACTCGGCAAAATCAGAC 297
Query 319 GTAGAACGCACGGTTGAGTTGATGAAGAAAGTGGAAGGTTTGGGAAAGGGTTTACACGGT 378
|||||||||||||||||||| ||||| |||||||||| |||||| |||| ||||||||||
Sbjct 298 GTAGAACGCACGGTTGAGTTCATGAACAAAGTGGAAGCTTTGGGGAAGGATTTACACGGT 357
Query 379 GCGTTCCTAAATCAGCTGGTGTTTGGCGGTGATATTGTGGA-TTTGGTTGAACAACTCGA 437
| ||| ||||||| | | | |||||||||||||| ||| | |||| |||||||| ||||
Sbjct 358 GTGTTTCTAAATCTGTTTGCCTTTGGCGGTGATATAGTG-ACTTTGATTGAACAATTCGA 416
Query 438 CGTGATTCTCTGCGATCACGCATCTCTTAAAGAGGAGTTCATATTGTTTCTAGTTGATTC 497
||||||| || |||||||||||||||||||||||||||| | | ||||||| | |||||
Sbjct 417 CGTGATTTTCCGCGATCACGCATCTCTTAAAGAGGAGTTTAAAGCGTTTCTAATCGATTC 476
Query 498 CCGTTTACTCAAAAAACCGAAACGTGGTTTTGAGGCGGGGGCAGAAGAGT 547
|||| |||||||||| |||||||||||||||||||||| || |||||||
Sbjct 477 CCGTATACTCAAAAACCCGAAACGTGGTTTTGAGGCGGAGGTTGAAGAGT 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24665527299
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5