BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22968.1
Length=1935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479805 jgi|Araly1|479805|fgenesh2_kg.3__2506__AT3G22970.1 2122 0.0
> Ahg479805 jgi|Araly1|479805|fgenesh2_kg.3__2506__AT3G22970.1
Length=1857
Score = 2122 bits (1149), Expect = 0.0
Identities = 1677/1902 (88%), Gaps = 155/1902 (8%)
Strand=Plus/Plus
Query 30 AAATTAACAAATTATCACAAAAATACGTTTTCTTGTATAATAA----TTTT--TCTCTAG 83
|||| |||||||||||||||||||||| ||||||||||||||| |||| |||||||
Sbjct 1 AAATAAACAAATTATCACAAAAATACG-TTTCTTGTATAATAATTTTTTTTCCTCTCTAG 59
Query 84 ATTTGTCGCTTACCTTTTGAAATTCTCCGGCGATGAATCTCGCCGGGAAAAGGAATATTC 143
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 60 ATTTGTCGCTTACCTTTTGAACTTCTCCGGCGATGAATCTCGCCGGGAAAATGAATATTC 119
Query 144 CGGTTATTATTTCTGTTTCCGTTAC---T-A----GT-GACTCTTACCATCGCCGTCATG 194
|||||| |||||||||||||||||| | | || |||||||||||||||||||| |
Sbjct 120 CGGTTACTATTTCTGTTTCCGTTACTAGTAACGCTGTCGACTCTTACCATCGCCGTCACG 179
Query 195 TCTTCCGTGAACATCGTCGGAC-CTGAAAAATCCTTCTCCTAGACtttttttttttCTTT 253
||||||||||| | || ||| ||||||||| |||| ||||
Sbjct 180 TCTTCCGTGAA-A---AAAAACTCTG----ATCCTTCTCTTAGA------------CTTT 219
Query 254 CTTCTCTTTGTATTATTATTCTTTGCTTCGTTTTTGTGAAGAAGATGATCCGCTGA-TTT 312
|| | ||| | ||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 220 -TT-T-TTT-T-TTATTATTCTTTGCTTCGTTTTTGT---GAAGATGATCCGCTGATTTT 271
Query 313 CAGAAGTTTTCTTCTTCTGGATTTTAGCTGAGAGGTTTTTGGTAGATTCTG-----T-TT 366
|||||| || ||||||||| |||||||||||||| ||||| ||||||||| | ||
Sbjct 272 CAGAAG--TT-TTCTTCTGGTTTTTAGCTGAGAGG-TTTTGTTAGATTCTGTTTCTTCTT 327
Query 367 CTTCTTCTTC--C-TCTGTGGTTTTCGAATCCAGTTTTGG-AATTTTTGAAGATTTTGTT 422
|||||||||| | ||| ||||||| ||||||| |||||| |||||||||||| ||| ||
Sbjct 328 CTTCTTCTTCTTCTTCTCTGGTTTTTGAATCCAATTTTGGAAATTTTTGAAGAGTTTCTT 387
Query 423 TAGTTTCTGTTGAAGAGATCTGAGATATTTGAACGAAGCAGAGTGTATATGAAATCAAAT 482
| |||| ||||| ||||||||||| | || |||||||||||||||||||
Sbjct 388 TCGTTTTTGTTGGAGAGATCTGAG--A-TT-----------AGTGTATATGAAATCAAAT 433
Query 483 CTGTGAAAATTTCTTTGAATTTGAATTGACTT-TGGACTTGTG-AGAGAAGTTAGATCTT 540
||||| ||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 434 CTGTG--------TTTGAATTTGAATTGACTTGGGGACTTGTGAAGAGAAGTTAGA---- 481
Query 541 CTTCTTCGTGAGCTATGCCATTTACGATGAAGATCCAACCGATTGATATCGATTCTTCAC 600
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 482 -----TCGAGAGCTATGCCATTTACGATGAAGATCCAACCGATTGATATCGATTCTTCTC 536
Query 601 CAACCGTAGCTAGAGCTGAATCAGGAAACAAACCGGTGCTCAAATCTCGTCTCAAACGTT 660
|| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 537 CAGCTGTAGCTAGAGCTGAATCAGGCAACAAACCGGTGCTCAAATCTCGTCTCAAACGTT 596
Query 661 TGTTTGATCGGCCGTTTACAAACGTATTGAGAAACTCAACAACTACAACCACCGAGAAAC 720
|||||||||| ||| || | || ||||||| |||| | |||||||| |||||||
Sbjct 597 TGTTTGATCGTCCG-TT-C--AC-----GAGAAACGCAAC-A--ACAACCACAGAGAAAC 644
Query 721 CATTCGTTGTCACCGGTGGTGAAGTTCAA--T-------GCGGCGGAGTAGTGACGGAGT 771
||||| ||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 645 CATTC---GTCACCGGTGGTGAAGTTCAATGTAGCGGCGGCGGCGGAGTAGTGACGGAGT 701
Query 772 TCGAGCCGAGTTCTGTTTGCTTAGCGAAGATGGTACAGAACTTCATTGAAGAAAACAACG 831
|||| || || ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 702 TCGAACCAAGCTCTGTTTGCTTAGCGAAGATGGTTCAGAACTTCATAGAAGAAAACAACG 761
Query 832 AGAAACAAGCTAAATGTGGACGTAATCGTTGTAATTGCTTTAACGGCAACAACGAT-GGT 890
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 762 AGAAACAAGCTAAATGTGGACGTAATCGTTGCAATTGCTTTAACGGCAACAACGATAGCT 821
Query 891 TCTTCCGATGATGAATCAGATCTATTCGGTGGTTCAATCGACGGTTGCGACGCTTCTGAT 950
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 AC-TCCGATGATGAATCAGATCTATTCGGTGGTTCAATCGACGGTTGCGACGCTTCTGAT 880
Query 951 CATCTCAAGAGTTTGATTCCGTGCACAACCGTCGGAGAGAGGAATCTGTTAGCCGACGCG 1010
||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 881 CATCTCAAGAGTTTGGTTCCATGCACAACCGTCGGCGAGAGGAATCTGTTAGCCGACGCG 940
Query 1011 GCGAAGATTGTAGATAAGAACAAATCGGTGAAACGAAAAGACGATATGAAGAAGATCGTC 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 GCGAAGATTGTAGATAAGAACAAATCGGTGAAACGAAAAGACGATATGAAGAAGATCGTC 1000
Query 1071 AATGAAGGACTCTTATCACTTAATTACAATTCTTCAATCTGCAAATCAAAATGGGATAAA 1130
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1001 AACGAAGGACTCTTATCACTTAATTACAATTCTTCAATCTGCAAATCTAAATGGGATAAA 1060
Query 1131 TCTCCTTCGTTCCCAGCTGGTGAATACGAGTACATAGATGTGATAATCGGAGAAGAAAGG 1190
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1061 TCTCCTTCGTTCCCAGCTGGTGAATATGAGTATATAGATGTGATAATCGGAGAAGAAAGG 1120
Query 1191 TTAATAATCGATGTAGATTTCCGATCAGAGTTCGATATAGCGAGACAAACGAGTGGTTAC 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 TTAATAATCGATGTAGATTTCCGATCAGAGTTCGATATAGCGAGACAAACGAGTGGTTAC 1180
Query 1251 AAGGTGTTGCTTCAATCTCTACCGTTCATTTTCGTCGGAAAATCTGATCGGTTAAGTCAG 1310
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 AAGGCGTTGCTTCAATCTCTACCGTTCATTTTCGTCGGAAAATCTGATCGGTTAAGTCAG 1240
Query 1311 ATCGTGTTTTTGATATCGGAGGCGGCGAAACAGAGTTTGAAGAAGAAAGGAATGCCTTTT 1370
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1241 ATTGTGTTTTTGATATCGGAGGCGGCGAAACAGAGTTTGAAGAAGAAAGGAATGCATTTT 1300
Query 1371 CCTCCGTGGAGGAAAGCTGAGTACATGCGATCTAAATGGCTCTCTTCTTATACGCGAGCT 1430
||||||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||||
Sbjct 1301 CCTCCGTGGAGGAAAGCTGAGTATATGCGATCTAAATGGTTATCTTCTTATACACGAGCT 1360
Query 1431 TCCGTTGTTGT------TGTCGATGAGA---CGGTGACGGTGACGGATGTTACGGCGGCG 1481
|| ||||| || ||| ||||||| ||| ||||| |||||||||| ||| || |
Sbjct 1361 TCTGTTGTCGTCGGAGATGTTGATGAGAAGGCGGAGACGGAGACGGATGTTGCGGTGGTG 1420
Query 1482 GATG-CGG-C--GGTGGAGAAGGAGGTGGATAGTGT---AGAGATTGAGCTGGTTTTTGA 1534
| | ||| | || ||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1421 -ACGGCGGACACGGCGGAGAGGGAGGTGGATAGTGTTGTAGAGATTGAGCTGGTTTTTGA 1479
Query 1535 GGAGAAATGTTTATCTCCGAGAGTGA-T-TG-TTAATTCTTCCTCCTCTCCAACCGACGG 1591
|||||||||||||||||||||||||| | | ||||||||||||||||||||| || |||
Sbjct 1480 GGAGAAATGTTTATCTCCGAGAGTGAATATTATTAATTCTTCCTCCTCTCCAAACGGCGG 1539
Query 1592 CGATGATGACGTGGCGGTGGAGAGAGAAGTGAAGGCTGTCACCGGATTAGCTTCACTCTT 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 CGATGATGACGTGGCGGTGGAGAGAGAAGTGAAGGCTGTCACCGGATTAGCTTCACTCTT 1599
Query 1652 TAAGGAAAAGCCCTAAATAAAAAATTTTGGAGtttttttttttaatttctttttctaatt 1711
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1600 TAAGGAAAAGCCCTAAATAAAAAATTTTGGAGTTTTTTTTTT------CTTTTTCTAATT 1653
Query 1712 ttCAAGGTaaaaaaa---tta--aaaa-TATATAACAGTAACCATATATTCGCttttttt 1765
||||||||||||||| ||| |||| ||||||||| || ||| |||||||||||||||
Sbjct 1654 TTCAAGGTAAAAAAACAATTATTAAAAATATATAACATTA-CCAAATATTCGCTTTTTTT 1712
Query 1766 ttttctt-acatttttgtagtttgttttgacctctcttgtttttttctttacaaggggtt 1824
|||| || || ||||||||||| |||||||||||||||||||||| ||||||||||| ||
Sbjct 1713 TTTTGTTTACCTTTTTGTAGTT-GTTTTGACCTCTCTTGTTTTTT-CTTTACAAGGGTTT 1770
Query 1825 tttaccactttgtACTTTAGTACCGTCCACGGTGaaaaaaat 1866
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 TTTACCACTTTGTACTTTAGTACCGTCCACGGTGAAAAAAAT 1812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72714277705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5