BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22990.1
Length=1648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479809 jgi|Araly1|479809|fgenesh2_kg.3__2510__AT3G22990.1 1956 0.0
> Ahg479809 jgi|Araly1|479809|fgenesh2_kg.3__2510__AT3G22990.1
Length=1361
Score = 1956 bits (1059), Expect = 0.0
Identities = 1280/1383 (93%), Gaps = 29/1383 (2%)
Strand=Plus/Plus
Query 258 GAGCAGAACAATAGAAGAATAGTTCTTGCGTTGCAGAGTGGTTTGAAGAGTGAGGTGACA 317
||||||||||| |||||||||||||||||| | || |||||||| ||||||||||| |||
Sbjct 1 GAGCAGAACAACAGAAGAATAGTTCTTGCGCTACAAAGTGGTTTAAAGAGTGAGGTTACA 60
Query 318 TGGGCATTGAACACACTTACGTTGCTTTCCTTCAAGGAAAAAGAAGATATTCGAAGAGAT 377
||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||||| |||||
Sbjct 61 TGGGCGTTGAATACACTTACATTGCTTTCCTTTAAGGAAAAAGACGATATTCGACGAGAT 120
Query 378 GTCATGCCTCTTGCTAAGATAGCTGGCTTGCTTGATGCCCTTCTCTTAATTATAGATGAT 437
|||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 121 GTCACGCCTCTTGCTAAGATATCTGGCTTGCTTGATGCACTTCTCTTAATTATAGATGAC 180
Query 438 TGGCGTGACATAGCTCTCCCAAAGGACCTGACAAGAGGAACTAGAGTTAGAACTTTAGGT 497
||||||||||||||||| |||||||| || ||||||||| |||| ||||| |||||||||
Sbjct 181 TGGCGTGACATAGCTCTTCCAAAGGATCTAACAAGAGGAGCTAGGGTTAGGACTTTAGGT 240
Query 498 ACAAATGCTTCAGTTACGGGATTTGGCAATGAGTATGATGCTCTAGCCTCTATTCAACCC 557
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 241 ACAAATGCTTCGGTTACGGGATTTGGCAATGAGTATGATGCTTTAGCCTCTATTCAACTC 300
Query 558 CCTGGATCCGGGATTGGTTCTTCTGCTGCTGAGGCATTAGGAAAAAAGAGCACTGGTAAA 617
|||||||| || ||||||||||| |||||||||| |||||||||||||||| ||| |||
Sbjct 301 CCTGGATCTGGCATTGGTTCTTCAGCTGCTGAGGGATTAGGAAAAAAGAGCGGTGGAAAA 360
Query 618 CATCAGTCATCTCAGTGGTGGATGGAAGAGGATGGTTTGTTTAATCTAGACGATGAAGGG 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CATCAGTCATCTCAGTGGTGGATGGAAGAGGATGGTTTGTTTAATCTAGACGATGAAGGG 420
Query 678 AGATCAGAGAAACAAATGTGTGCTATTGCTGCATCGAACGTTATCCGCAACTTCTCCTTC 737
|||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 421 AGATCAGAGAAACAAATGTGCGCCATTGCTGCATCTAACGTTATCCGCAACTTCTCCTTT 480
Query 738 ATGCCTGATAATGAAGTTGTAATGGCTCAGCATCGCCATTGCTTAGAAACTGTTTTCCAG 797
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 ATGCCTGATAATGAAGTTGTAATGGCTCAGCATCGTCATTGCTTAGAAACTGTTTTCCAG 540
Query 798 TGCATACACGATCATATGACCGAGGATGAAGAGCTGGTCACAAACTCGCTAGAGACAATT 857
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 541 TGCATACACGATCATATGACTGAGGATGAAGAGCTGGTCACAAACTCGCTCGAGACAATT 600
Query 858 GTAAACCTAGCGCATTTGATGGATCTTCGAATTTTCAGCTCGCTTAAGCAGTCATACATC 917
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTAAACCTAGCGCATTTGATGGATCTTCGAATTTTCAGCTCGCTTAAGCAGTCATACATT 660
Query 918 AACATAAATGAAAAGAAAGCTGTTCAAGCTGTGGTCGGAATCCTCAATTCTTCTGTCAAA 977
||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 661 AACATAAATGAGAAGAAAGCTGTTCAAGCTGTGGTCGGAATCCTCGATTCTTCCGTCAAA 720
Query 978 GCTTGGAATTGTGCTGCTGCTGAGTTGCTAGGGCGTTTGATAATCAATCCGGACAATGAA 1037
||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||
Sbjct 721 GCTTGGAATTGTGCTGCTGCTGAATTACTGGGGCGTTTGATTATCAATCCGGACAATGAA 780
Query 1038 CCTTTCATTAGTCCTTTAATTCCGCAGATACACAAGCGACTAATCGATCTTTTGAGCATA 1097
|||||||||||||| |||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct 781 CCTTTCATTAGTCCCTTAATTCCACAGATACACAAGCGACTAGTCGATCTCTTGAGCATA 840
Query 1098 CAAGCCGTTGATGCACAAGCTGCAGCTGTTGGAGCACTCTACAATCTCGTGGAAGTTAAC 1157
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 841 CAAGCCGTTGATGCACAAGCCGCAGCTGTTGGAGCACTCTACAACCTCGTGGAAGTTAAC 900
Query 1158 ATGGATTGCAGATTAAAGCTAGCAAGTGAGAGATGGGCGGTTGATAGGTTGCTGAAAGTG 1217
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 901 ATGGATTGCAGATTAAAGCTCGCAAGTGAGAGATGGGCGGTTGATAGATTGCTAAAAGTG 960
Query 1218 ATAAAGACTCCGCATCCGGTTCCAGAAGTATGTAGGAAAGCTGCAATGATCCTTGAGAAC 1277
||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 961 ATAAAGACTCCGCATCCAGTTCCAGAAGTATGCAGGAAAGCTGCAATGATACTTGAGAAC 1020
Query 1278 CTTGTCTCGGAGCCTCAAAACAGAGGATTGCTACTCGCGTATGAGAATGCTTTCGCTGAG 1337
|||||||| ||||||||||||||||||||||| ||||| || |||||||| |||||||||
Sbjct 1021 CTTGTCTCCGAGCCTCAAAACAGAGGATTGCTGCTCGCATACGAGAATGCGTTCGCTGAG 1080
Query 1338 CTGCTTTTTCAAGAGGGTAAGTATTCTGATTCATTTGCTAGGATTTTGTATGAACTCACT 1397
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTACTTTTTCAAGATGGTAAGTATTCTGATTCATTTGCTAGGATTTTGTATGAACTCACT 1140
Query 1398 GCTAGATCTAATAGCAGAGTTGCTTCAGCTAGAGGAATCTGGGGCATGTAAAAGTCTTCT 1457
|||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct 1141 GCTAGATCAAATAGCAGAGTGGCTTCAGCTAGAGGAATCTGGGGTATGTAAAAGTCT-CT 1199
Query 1458 CTAGATTAGTGGGTTTGATTAATTGA-TTGTGTTGTAAACTTTAATCATTTGCTATGTAT 1516
|||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 1200 --AGATTAGTGGGTTTGATTAATTAAGTT-TGTTGTAAACTTTAATCATTTGCTATGTAT 1256
Query 1517 TAAAAAAGCAGTGTTGTTGAACAAAAAGTAGATGGATTCTTCTC-T-----CGCATAGCT 1570
| |||| |||||| ||||||||||||||||| | |||||||||
Sbjct 1257 T----------TGTTA---AACAAA--GTAGATGGATTCTTCTCATTATTTCGCATAGCT 1301
Query 1571 TCGACATGTGTTTTGTTTGATCTTTACTAAAAACAAATTTGAGATATTTTGTGATTCAAA 1630
||||||||||| || || ||||||||||||||||||||| ||||||| || |||||||||
Sbjct 1302 TCGACATGTGTGTT-TT-GATCTTTACTAAAAACAAATT-GAGATATATTATGATTCAAA 1358
Query 1631 TTG 1633
|||
Sbjct 1359 TTG 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61782377390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5