BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23000.1
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479810 jgi|Araly1|479810|fgenesh2_kg.3__2511__AT3G23000.1 2060 0.0
> Ahg479810 jgi|Araly1|479810|fgenesh2_kg.3__2511__AT3G23000.1
Length=1342
Score = 2060 bits (1115), Expect = 0.0
Identities = 1250/1315 (95%), Gaps = 9/1315 (1%)
Strand=Plus/Plus
Query 50 CCGCCGCCATGGAATCACTTCC-CCAGCCGCAAAACCAATCATCTCCGGCAACAACTCCG 108
|||||||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||
Sbjct 34 CCGCCGCCATGGAATCACTTCCTCC-GCCGCAAAATCAAACATCTCCGGCAACAACTCCG 92
Query 109 GCGAAGATC-CTCCTTGGGAAATACGAACTCGGTCGTCGTCTCGGTAGCGGAAGCTTCGC 167
|| || | | ||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 93 GC-AAAAGCTCTCCTCGGAAAATACGAACTCGGTCGTCGACTCGGTAGCGGAAGCTTCGC 151
Query 168 GAAAGTCCATTTAGCTCGATCAATCGAATCCGACGAGCTCGTCGCCGTTAAAATCATCGA 227
|||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 152 GAAAGTTCATCTAGCTCGATCAATCGAATCCGACGAGCTCGTCGCCATTAAAATCATCGA 211
Query 228 GAAGAAGAAAACAATCGAATCCGGTATGGAACCAAGAATAATCAGAGAGATCGATGCGAT 287
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 212 GAAGAAGAAAACAATCGAATCAGGCATGGAACCAAGAATAATCAGAGAGATCGATGCGAT 271
Query 288 GCGTCGTCTTCGTCATCATCCAAACATACTCAAGATCCATGAAGTTATGGCAACCAAATC 347
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 272 GCGTCGTCTTCGTCATCATCCAAACATACTTAAGATCCATGAAGTTATGGCAACCAAATC 331
Query 348 TAAGATCTATCTCGTAATGGAACTCGCTTCCGGTGGTGAACTTTTCTCAAAAGTCCTCCG 407
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 332 TAAGATCTATCTCGTAATGGAACTCGCTTCCGGTGGTGAACTTTTCTCTAAAGTCCTCCG 391
Query 408 TCGTGGACGTCTTCCTGAATCAACGGCGCGTCGTTACTTTCAACAACTCGCCTCCGCTCT 467
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 392 TCGTGGTCGTCTTCCTGAATCAACGGCGCGTCGTTACTTTCAACAACTAGCCTCCGCGCT 451
Query 468 TCGTTTCTCTCACCAAGACGGTGTCGCTCACCGTGATGTGAAACCTCAGAATCTACTCTT 527
| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 452 TAGATTCTCTCACCAAGACGGTGTCGCTCACCGTGATGTGAAACCACAGAATCTACTCTT 511
Query 528 AGATGAGCAAGGTAACCTCAAGGTCTCTGACTTTGGTTTATCAGCTTTACCGGAGCATCT 587
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 512 AGATCAGCAAGGTAACCTCAAGGTCTCTGACTTTGGTTTATCAGCTTTACCGGAACATCT 571
Query 588 ACAAAACGGATTGCTTCACACGGCGTGTGGTACTCCGGCTTATACAGCTCCGGAGGTTAT 647
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 572 CCAAAACGGATTGCTTCACACGGCGTGTGGTACTCCGGCTTACACAGCTCCGGAGGTTAT 631
Query 648 TTCACGGAGGGGATACGACGGAGCAAAAGCTGATGCGTGGTCTTGTGGTGTGATTTTGTT 707
||| ||| | |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 632 TTCGCGGCGAGGATACGACGGAGCGAAAGCTGATGCGTGGTCTTGTGGTGTGATTTTGTT 691
Query 708 TGTT-TTATTGGTTGGCGATGTTCCATTTGATGATTCGAATATCGCTGCGATGTATCGGA 766
|||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 692 TGTTCTT-TTGGTTGGCGACGTTCCATTTGATGATTCGAATATCGCAGCGATGTATCGGA 750
Query 767 AGATTCATCGGAGAGATTATCGGTTTCCGAGCTGGATTTCGAAACAAGCTAAATCGATAA 826
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 751 AGATTCATCGGAGAGATTATCGATTTCCGAGCTGGATTTCGAAACAAGCGAAATCGATAA 810
Query 827 TCTATCAGATGTTAGATCCGAATCCAGTAACGAGGATGAGTATTGAAACAGTGATGAAAA 886
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 811 TCTATCAGATGTTAGATCCGAATCCAGTAACGAGGATGAGTATTGAAACAGTTATGAAGA 870
Query 887 CGAATTGGTTCAAGAAGTCTCTAGAGACTTCTGAGTTTCATCGTAACGTCTTTGATTCGG 946
|||||||||||||||| |||||||| ||||||||||||||||||||| | ||||||||||
Sbjct 871 CGAATTGGTTCAAGAAATCTCTAGAAACTTCTGAGTTTCATCGTAACATTTTTGATTCGG 930
Query 947 AAGTAGAGATGAAATCGAGTGTTAATTCGATTACTGCTTTTGATTTGATCTCGTTATCGT 1006
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 931 AACCGGAGATGAAATCGAGTGTTAATTCGATTACTGCTTTCGATTTGATCTCGTTGTCGT 990
Query 1007 CGGGATTAGATCTTTCTGGATTGTTTGAGGCTAAGAAGAAGAAGGAGAGGAGATTCACGG 1066
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 991 CGGGGTTAGATCTTTCTGGATTGTTTGAGGTTAAGAAGAAGAAGGAGAGGAGATTCACCG 1050
Query 1067 CGAAGGTTTCGGGTGTTGAAGTGGAGGAGAAGGCGAAGATGATTGGGGAGAAGTTAGGTT 1126
|||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1051 CGAAGGTTTCGGCTGTTGAAGTGGAGGAGAAAGCGAAGATGATTGGGGAGAATTTAGGTT 1110
Query 1127 ATGTAGtgaagaagaagatgatgaagaaggaaggagaagtgaaggttgttggattaggga 1186
||||||||||||||||||||| ||| | | ||||||||| ||||||||||||||||||||
Sbjct 1111 ATGTAGTGAAGAAGAAGATGAAGAA-A-G-AAGGAGAAGCGAAGGTTGTTGGATTAGGGA 1167
Query 1187 gaggaagaaCTGTGATTGTGGTGGAAGCAGTGGAGTTAACGGTGGATGTTGTGGTGGTTG 1246
|||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1168 GAGGAAGAACTGCGATTGTGGTGGAAGCGGTTGAGTTAACGGTGGATGTTGTGGTGGTTG 1227
Query 1247 AAGTGAAAGTTGTTGAAGGTGAAGAAGATGATTCACGGTGGTCTGATTTGATTACTGAGC 1306
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1228 AAGTGAAAGTTGTTGAAGGTGAAGAAGATGATTCACGGTGGTTTGATTTGATTACAGAGC 1287
Query 1307 TTGAAGATATAGTTCTTTCATGGCACAATGACATCATGTAAATAGATTGTGACtt 1361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 TTGAAGATATAGTTCTTTCATGGCACAATGACATCATGTAAATAGATTGTGACTT 1342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57478179705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5