BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23030.1
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930309 jgi|Araly1|930309|scaffold_302766.1 922 0.0
Ahg946923 jgi|Araly1|946923|scaffold_703152.1 339 3e-92
Ahg936765 jgi|Araly1|936765|scaffold_500956.1 233 1e-60
Ahg952206 jgi|Araly1|952206|scaffold_45700004.1 215 5e-55
Ahg351649 jgi|Araly1|351649|fgenesh1_pg.C_scaffold_6002242 196 2e-49
> Ahg930309 jgi|Araly1|930309|scaffold_302766.1
Length=565
Score = 922 bits (499), Expect = 0.0
Identities = 542/563 (96%), Gaps = 2/563 (0%)
Strand=Plus/Plus
Query 96 TTGATATTGATCCAAAAGCAATGGCGTACGAGAAAGTCAACGAGCTTAACCTTAAGGACA 155
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGATATTGATCAAAAAGCAATGGCGTACGAGAAAGTCAACGAGCTTAACCTTAAGGACA 60
Query 156 CAGAGCTATGTCTTGGATTACCCGGAAGAACAGA-GAAGATCAAAGAAGAACAAGAGGTT 214
|||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||||
Sbjct 61 CAGAGCTATGTCTTGGATTACCAGGAAGAACACAGGAA-ATCAAAGAAGAACAAGAGGTT 119
Query 215 TCTTGCGTTAAAAGTAACAACAAGCGTCTATTTGAGGAAACTCGTGATGAAGAAGAATCT 274
|||||||||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||
Sbjct 120 TCTTGCGTTAAAAGCAACAACAAGCGTCAATTTGAAGAAACTCGTGAGGAAGAAGAATCT 179
Query 275 ACACCTCCTACCAAAACTCAAATCGTTGGTTGGCCACCAGTGAGATCTTCCCGTAAGAAC 334
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 180 ACACCTCCTACCAAAACTCAAATCGTTGGATGGCCACCGGTGAGATCTTCCCGTAAGAAC 239
Query 335 AACAACAGTGTGAGCTACGTGAAAGTGAGTATGGACGGAGCTCCTTACCTTCGCAAGATC 394
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 240 AACAACAGTGTGAGCTACGTGAAAGTGAGTATGGACGGAGCTCCTTACCTCCGCAAGATC 299
Query 395 GATCTCAAGACATACAAAAACTACCCCGAGCTTCTCAAAGCGTTAGAGAATATGTTCAAA 454
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 300 GATCTCAAGACATACAAAAACTACCCCGAGCTTCTCAAGGCGTTAGAGAACATGTTCAAA 359
Query 455 GTCATGATTGGTGAATATTGTGAGAGAGAAGGATACAAAGGATCTGGATTTGTACCAACA 514
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTCACGATTGGTGAATATTGTGAGAGAGAAGGATACAAAGGATCTGGATTTGTACCAACA 419
Query 515 TACGAAGATAAAGATGGTGACTGGATGTTGGTTGGTGATGTTCCATGGGACATGTTCTCT 574
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 420 TACGAAGATAAAGATGGAGATTGGATGTTGGTTGGTGATGTTCCATGGGACATGTTCTCT 479
Query 575 TCTTCTTGTAAGAGACTCAGAATCATGAAGGGATCCGACGCTCCTGCTCTAGACTCTTCC 634
||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct 480 TCTTCTTGTAAGAGACTCAGAATCATGAAAGGATCCGATGCTCCTGCTTTAGACTCTTCC 539
Query 635 TTATGATCCAGAGAAGCTGAGAA 657
|||||||||||||||| ||||||
Sbjct 540 TTATGATCCAGAGAAGATGAGAA 562
> Ahg946923 jgi|Araly1|946923|scaffold_703152.1
Length=549
Score = 339 bits (183), Expect = 3e-92
Identities = 404/505 (80%), Gaps = 37/505 (7%)
Strand=Plus/Plus
Query 132 TCAACGAGCTTAACCTTAAGGACACAGAGCTAT-GTCTT-GGATTACCCGGAAGAACAGA 189
|||| | |||||||||||||||||| ||||| | || || |||||||| || || ||| |
Sbjct 31 TCAATGGGCTTAACCTTAAGGACACCGAGCT-TCGT-TTGGGATTACCTGG-AGCACA-A 86
Query 190 GAAGATCAAAGAAGAACAAGAGGTTTCTTGCGTTAAAAGTAACAACAAGCGTCTATTTGA 249
|||| || || ||||||| ||||||||||| | ||| ||||||||||| | |
Sbjct 87 GAAG----AACAACAACAAGAAGTTTCTTGCGTCAGAAGCAACAACAAGCG---A---AA 136
Query 250 GGA-AAC-TCGTGATGAAGAAGAA--T-CTACACCTCCTACCAAAACTCAAATCGTTGGT 304
| | ||| | | | |||||||| | || | |||||| ||||||| |||||||| ||
Sbjct 137 GAACAACGAC-TCA-AAAGAAGAATCTGCTCCTCCTCCTGCCAAAACACAAATCGTGGGA 194
Query 305 TGGCCACCAGTGAGATCTTCCCGTAAG---AACAACAAC---AGTGTGAGCTACGTGAAA 358
||||| ||| |||||||| ||||||| ||||||||| | || || || ||||||
Sbjct 195 TGGCCTCCATTGAGATCTAACCGTAAGAACAACAACAACAAAAACGTTAGTTATGTGAAA 254
Query 359 GTGAGTATGGACGGAGCTCCTTACCTTCGCAAGATCGATCTCAAGACATACAAAAACTAC 418
||||||||||||||||| || || || || || || |||||||||| |||||||||||
Sbjct 255 GTGAGTATGGACGGAGCACCATATCTCCGTAAAATAGATCTCAAGATGTACAAAAACTAT 314
Query 419 CCCGAGCTTCTCAAAGCGTTAGAGAATATGTTCAAAG-TCATGA-TTGGTGAATATT-GT 475
|| |||||||||||||| | ||||| |||||| ||| ||| | | |||||||||| |
Sbjct 315 CCAGAGCTTCTCAAAGCACTCGAGAACATGTTC-AAGTTCA-CAGTAGGTGAATATTCG- 371
Query 476 GAGAGAGAAGGATACAAAGGATCTGGATTTGTACCAACATACGAAGATAAAGATGGTGAC 535
|| |||||||| ||||||||||| ||||||||||| || || ||||| |||||||| ||
Sbjct 372 GAAAGAGAAGGCTACAAAGGATCAGGATTTGTACCTACTTATGAAGACAAAGATGGAGAT 431
Query 536 TGGATGTTGGTTGGTGATGTTCCATGGGACATGTTCTCTTCTTCTTGT-AAGAGACTCAG 594
||||||||||| ||||||||||||||||||||||||||||| |||||| || | ||||||
Sbjct 432 TGGATGTTGGTCGGTGATGTTCCATGGGACATGTTCTCTTCATCTTGTCAAAA-ACTCAG 490
Query 595 AATCATGAAGGGATCCGACGCTCCT 619
||||||||| ||||| || | ||||
Sbjct 491 AATCATGAAAGGATCTGAAGTTCCT 515
> Ahg936765 jgi|Araly1|936765|scaffold_500956.1
Length=197
Score = 233 bits (126), Expect = 1e-60
Identities = 151/163 (93%), Gaps = 1/163 (1%)
Strand=Plus/Plus
Query 495 GATCTGGATTTGTACCAACATACGAAGATAAAGATGGTGACTGGATGTTGGTTGGTGATG 554
||| ||||||||||||||| ||||| ||||||||| | || |||||||||||||||||||
Sbjct 33 GAT-TGGATTTGTACCAACGTACGAGGATAAAGATCGAGATTGGATGTTGGTTGGTGATG 91
Query 555 TTCCATGGGACATGTTCTCTTCTTCTTGTAAGAGACTCAGAATCATGAAGGGATCCGACG 614
||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |
Sbjct 92 TTCCATGGGACATGTTCTCTTCTTCGTGTAAAAGACTCAGAATCATGAAAGGATCCGATG 151
Query 615 CTCCTGCTCTAGACTCTTCCTTATGATCCAGAGAAGCTGAGAA 657
|||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 152 CTCCTGCTCTAGACTCTTCCTTATGATCTAGAGAAGATGAGAA 194
> Ahg952206 jgi|Araly1|952206|scaffold_45700004.1
Length=206
Score = 215 bits (116), Expect = 5e-55
Identities = 157/176 (89%), Gaps = 6/176 (3%)
Strand=Plus/Plus
Query 495 GATCTGGATTTGTACCAACATACGAAGATAAAGATGGTGACTGGATGTTGGTTGGTGATG 554
||| ||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||
Sbjct 33 GAT-TGGATTTGTACCAACGTACGAGGATAAAGATGGAGATTGGATGTTGGTTGGTGATG 91
Query 555 TTCCATGGGACATGTTCTCTTCTTCTTGTAAGAGACTCAGAATCATGAAGGGATCCGACG 614
||||||||||||||||||||||||| ||||| |||||| |||||||||| |||| |
Sbjct 92 TTCCATGGGACATGTTCTCTTCTTCCTGTAAAAGACTCGGAATCATGAAAGGAT-----G 146
Query 615 CTCCTGCTCTAGACTCTTCCTTATGATCCAGAGAAGCTGAGAATCTTTTGTCTAAA 670
|||||||||||||||||||||||||||| | ||||| |||||| ||||||| ||||
Sbjct 147 CTCCTGCTCTAGACTCTTCCTTATGATCTACAGAAGATGAGAAGCTTTTGTTTAAA 202
> Ahg351649 jgi|Araly1|351649|fgenesh1_pg.C_scaffold_6002242
Length=633
Score = 196 bits (106), Expect = 2e-49
Identities = 143/160 (89%), Gaps = 6/160 (4%)
Strand=Plus/Plus
Query 495 GATCTGGATTTGTACCAACATACGAAGATAAAGATGGTGACTGGATGTTGGTTGGTGATG 554
||| ||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||
Sbjct 480 GAT-TGGATTTGTACCAACGTACGAGGATAAAGATGGAGATTGGATGTTGGTTGGTGATG 538
Query 555 TTCCATGGGACATGTTCTCTTCTTCTTGTAAGAGACTCAGAATCATGAAGGGATCCGACG 614
||||||||||||||||||||||||| ||||| |||||| |||||||||| |||| |
Sbjct 539 TTCCATGGGACATGTTCTCTTCTTCCTGTAAAAGACTCGGAATCATGAAAGGAT-----G 593
Query 615 CTCCTGCTCTAGACTCTTCCTTATGATCCAGAGAAGCTGA 654
|||||||||||||||||||||||||||| | ||||| |||
Sbjct 594 CTCCTGCTCTAGACTCTTCCTTATGATCTACAGAAGATGA 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34920591972
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5