BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23050.1
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319024 jgi|Araly1|319024|fgenesh1_pm.C_scaffold_3002040 1122 0.0
Ahg493451 jgi|Araly1|493451|fgenesh2_kg.7__2884__AT4G14550.1 590 1e-167
> Ahg319024 jgi|Araly1|319024|fgenesh1_pm.C_scaffold_3002040
Length=729
Score = 1122 bits (607), Expect = 0.0
Identities = 691/732 (94%), Gaps = 3/732 (0%)
Strand=Plus/Plus
Query 90 ATGATCGGCCAACTTATGAACCTCAAGGCCACGGAGCTCTGTCTCGGCCTCCCCGGCGGC 149
|||||||| |||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 1 ATGATCGGACAACTTATGAACCTCAAGGCGACGGAGCTCTGTCTTGGTCTCCCCGGCGGC 60
Query 150 GCTGAAGCAGTTGAGAGTCCTGCCAAATCGGCGGTGGGAAGCAAGAGAGGCTTCTCCGAA 209
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTGAAGCCGTTGAGAGCCCTGCCAAATCGGCGGTGGGAAGCAAGAGAGGCTTCTCCGAG 120
Query 210 ACCGTTGATCTCATGCTCAATCTTCAATCTAACAAAGAAGGCTCCGTTGATCTCAAAAAC 269
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 121 ACCGTTGATCTTATGCTCAATCTTCAATCTAACAAAGAAGGCTCCGTCGATCTCAACAAC 180
Query 270 GTTTCTGCTGTTCCCAAGGAGAAGACTACCCTTAAAGATCCTTCTAAGCCTCCTGCTAAA 329
|| |||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 GTCGCTGCAGCTCCTAAGGAGAAGACTACCCTCAAAGATCCTTCTAAGCCTCCTGCTAAA 240
Query 330 GCACAAGTGGTGGGATGGCCACCTGTGAGGAACTACAGGAAGAACATGATGACTCAGCAG 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCACAAGTGGTGGGATGGCCACCTGTGAGGAACTACAGGAAGAACATGATGACTCAGCAG 300
Query 390 AAGACCAGTAGTGGTGCGGAGGAGGCCAGCAGTGAGAAGGCCGGGAACTTTGGTGGAGGA 449
||||||||| | | | ||| ||||||||||| ||||||||||||| | |||||||||
Sbjct 301 AAGACCAGT-G-GC-GAGGAAGAGGCCAGCAGCGAGAAGGCCGGGAGCGGCGGTGGAGGA 357
Query 450 GCAGCCGGAGCCGGCTTGGTGAAGGTCTCCATGGACGGTGCTCCATATCTGAGGAAAGTT 509
|| | ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 358 GCGGTCGGAGCCGGCTTGGTGAAGGTGTCCATGGACGGTGCTCCCTATCTGAGGAAAGTT 417
Query 510 GACCTCAAGATGTACAAAAGCTACCAGGATCTTTCTGATGCATTGGCCAAAATGTTCAGC 569
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 418 GACCTCAAGATGTACAAAAGCTACCAGGATCTCTCTGATGCCTTGGCCAAAATGTTCAGC 477
Query 570 TCCTTTACTATGGGAAACTATGGAGCACAAGGAATGATAGATTTCATGAACGAGAGCAAG 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TCCTTTACTATGGGAAACTATGGAGCACAAGGAATGATAGATTTCATGAACGAGAGCAAG 537
Query 630 CTAATGAATCTGCTGAATAGCTCTGAGTATGTGCCAAGCTACGAGGACAAAGATGGTGAC 689
|| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 538 CTTATGAATCTCCTGAATAGTTCTGAGTATGTCCCAAGCTACGAGGACAAAGATGGTGAT 597
Query 690 TGGATGCTCGTTGGCGATGTCCCATGGGAAATGTTTGTCGAGTCTTGCAAACGTTTGCGC 749
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 598 TGGATGCTCGTCGGCGATGTCCCATGGGAAATGTTTGTCGAGTCCTGCAAACGTTTGCGC 657
Query 750 ATTATGAAGGGATCTGAAGCAGTTGGACTTGCTCCGAGAGCAATGGAGAAGTACTGCAAG 809
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATTATGAAGGGATCTGAAGCAATTGGACTTGCTCCGAGAGCAATGGAGAAGTACTGCAAG 717
Query 810 AACAGATCTTGA 821
||||||||||||
Sbjct 718 AACAGATCTTGA 729
> Ahg493451 jgi|Araly1|493451|fgenesh2_kg.7__2884__AT4G14550.1
Length=1458
Score = 590 bits (319), Expect = 1e-167
Identities = 598/726 (82%), Gaps = 46/726 (6%)
Strand=Plus/Plus
Query 105 ATGAACCTCAAGGCCACGGAGCTCTGTCTCGGCCTCCCCGGCGGCGCTGAAGCAGTTGAG 164
|||||||| |||| |||||||| ||||| |||||||| || || | |||| | |||||
Sbjct 69 ATGAACCTTAAGGAGACGGAGCTTTGTCTTGGCCTCCCTGGAGGTGGTGAAACCGTTGAA 128
Query 165 AGTCCTG-CCAAATC-GGCGGT-GGGAAGCAAGAGAGGCTTCTCCGAAACCGTTGATCTC 221
||||| | |||| || ||| || || || ||||||||||||||| || || |||| ||||
Sbjct 129 AGTCC-GTCCAAGTCGGGC-GTAGGTAA-CAAGAGAGGCTTCTCTGAGACTGTTGGTCTC 185
Query 222 ATGCTCAATCTTCAATCTAACAAAGAAGGCTCC-GTTGATCTCAAAAACGTTTCTGCTGT 280
| ||||||||||||||||||||| |||| || || |||||| |||||| || |
Sbjct 186 AAACTCAATCTTCAATCTAACAAACAAGG-ACCTGTGGATCTC---AACGTTAATGGAGC 241
Query 281 TCCCAAGGAGAAGA-CTACCCTTAAAGATCCTTCTAAGCCTCCTGCTAAAGCACAAGTGG 339
|||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||
Sbjct 242 TCCCAAGGAGAAGACCT-TCCTTAAAGACCCTTCTAAGCCTCCTGCTAAAGCACAAGTGG 300
Query 340 TGGGATGGCCACCTGTGAGGAACTACAGGAAGAACATG--ATGACTCAGCAGAAGACCAG 397
|||| |||||||| |||||||||||| ||| || ||| ||| || | ||||||| | |
Sbjct 301 TGGGTTGGCCACCGGTGAGGAACTAC-CGAA-AAAATGTTATGGCTAATCAGAAGAGC-G 357
Query 398 TAGTGGTGCGGAGGAGGCCAGCAGTGAGAAGGCCGGGAACTTTGGTGGAGGAGCAGCCGG 457
| | |||||||||| || | |||| | | |||||||||| | ||
Sbjct 358 --GCGAAGCGGAGGAGG-CA--A-TGAGTA------G-----TGGTGGAGGA--A-CC-- 395
Query 458 AGCCGGCTTGGTGAAGGTCTCCATGGACGGTGCTCCATATCTGAGGAAAGTTGACCTCAA 517
| || ||| |||||||| |||||||| || ||||| ||||| |||| |||||||||||
Sbjct 396 -GTCGCCTTTGTGAAGGTTTCCATGGATGGAGCTCCTTATCTTCGGAAGGTTGACCTCAA 454
Query 518 GATGTACAAAAGCTACCAGGATCTTTCTGATGCATTGGCCAAAATGTTCAGCTCCTTTAC 577
||||||||| |||||| || |||| |||||||| ||||||||||||||||||||||||||
Sbjct 455 GATGTACAACAGCTACAAGAATCTCTCTGATGCCTTGGCCAAAATGTTCAGCTCCTTTAC 514
Query 578 TATGGGAAACTATGGAGCACAAGGAATGATAGATTTCATGAACGAGAG-CAAGCTAATGA 636
||||| | |||||||||||||| ||||||||||||||||||||||| ||| | |||
Sbjct 515 CATGGGGAGTTATGGAGCACAAGGGATGATAGATTTCATGAACGAGAGTAAAG-TGATGG 573
Query 637 ATCTGCTGAATAGCTCTGAGTATGTGCCAAGCTACGAGGACAAAGATGGTGACTGGATGC 696
||||| |||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 574 ATCTGTTGAACAGTTCTGAGTATGTTCCAAGCTACGAGGACAAAGATGGTGACTGGATGC 633
Query 697 TCGTTGGCGATGTCCCATGGGAAATGTTTGTCGAGTCTTGCAAACGTTTGCGCATTATGA 756
||||||| |||||||| ||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 634 TCGTTGGTGATGTCCCCTGGCCGATGTTTGTCGAGTCATGCAAACGTTTGCGCATAATGA 693
Query 757 AGGGATCTGAAGCAGTTGGACTTGCTCCGAGAGCAATGGAGAAGTACTGCAAGAACAGAT 816
| ||||| |||||| ||||||||||||| ||||| |||||||||| | |||||||||||
Sbjct 694 AAGGATCCGAAGCAATTGGACTTGCTCCAAGAGCGATGGAGAAGT--T-CAAGAACAGAT 750
Query 817 CTTGAA 822
| ||||
Sbjct 751 CATGAA 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47005556661
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5