BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23060.1
Length=1792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479814 jgi|Araly1|479814|fgenesh2_kg.3__2515__AT3G23060.1 1881 0.0
> Ahg479814 jgi|Araly1|479814|fgenesh2_kg.3__2515__AT3G23060.1
Length=1761
Score = 1881 bits (1018), Expect = 0.0
Identities = 1527/1760 (87%), Gaps = 86/1760 (5%)
Strand=Plus/Plus
Query 76 TCGATTCTCTCTGAGAAAACCAACAATAAAGCTAGACAC-ttttttttGTGGGTTTGTCT 134
||||||||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct 43 TCGATTCTCTCTGAGAAAA-CACCAATAAAGCTAGACACTTTTTTTTTGTGGGTTTG--- 98
Query 135 TCTTCTTCGTTCATGCACCATGTTGTGTTACGTGAACGAAGAAGCTATATAATCAAT-AA 193
| || ||||| ||||||||||| || ||||||||||| ||||||||||||||||| ||
Sbjct 99 TGTTATTCGTACATGCACCATGCTGCGTTACGTGAAC---GAAGCTATATAATCAATAAA 155
Query 194 ATCTTATCGATTTGTTGAGTTTGGGAATCGGAGAGAAAGATGTTAACAAAGGTGCTTA-G 252
||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| | |
Sbjct 156 ATCTTATCGATTTGTTGTGTTTTGGAATCGGAGAGAAAGATGCTAACAAAGGTGGAGACG 215
Query 253 TAAGGAGGTTAAGCCATGCCTTGCTTGTCCAATCTGC-ACTAATCCGTTTAAGGATGCCA 311
|| | |||| ||||| |||||||||| ||||| || |||| ||||||||||||||
Sbjct 216 -AAAGTGGTTGAGCCAAAATTTGCTTGTCCGCTCTGCAAC-AATCGGTTTAAGGATGCCA 273
Query 312 CCACAATCTCCGAGTGTCTCCACACCTTTTGCAGGAGCTGCATTCGTAACAAGTTCATAA 371
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 274 CCACAATCTCCGAGTGTCTTCACACATTTTGCAGGAGCTGCATTCGTAACAAGTTCATAA 333
Query 372 ATGAGAGAGTGAACGCTTGTCCAGTCTGCAACGTTAACCTCGGTGTTTTTCCTCTAGAGA 431
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 334 ATGAGAGAGTGAAAGCTTGTCCAGTCTGCAACGTTAACCTCGGTGTTTTTCCTCTACATA 393
Query 432 AACTTCGGTCGGATTGCACTTGGC-AGGATTTGAAGCTGAAAATCTACCGAGCAATGATG 490
||||||||||||||| || ||||| | | ||||||||||||| || |||| |||| |
Sbjct 394 AACTTCGGTCGGATTACAGTTGGCAAAG-TTTGAAGCTGAAAGTCGACCGGGCAA--A-- 448
Query 491 GAAAGCTTAAAGAAGGCAGGACCTAAAACTGTTGCAGCGTCTGTGAAATCTTCGAAAAAG 550
| | | ||| ||| | || | ||||| |||||||||||||||||||||
Sbjct 449 G--A-C----GGAA---AGG--GT-TAA--G--GCAGCCTCTGTGAAATCTTCGAAAAAG 491
Query 551 AAGAGAAAATCTCGAACTTCA-CTGCGGGTCTCTTCATCTAGAGTATCATCCTCACCTGA 609
||| ||||||||| ||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 492 AAGGGAAAATCTCTAACTTCACCAG-TGGTCTCTTCATCTAGAGTATCATCCTCACCTGA 550
Query 610 TACTCCATTGGAACCAGCCAATGTGGTTGTGGAACCACCTAATGTGGTTGTGGAGGAGAA 669
|||||||||| ||||| ||| |||||||||||| ||||| | ||||||||||||||||||
Sbjct 551 TACTCCATTGAAACCACCCATTGTGGTTGTGGAGCCACCCATTGTGGTTGTGGAGGAGAA 610
Query 670 ACATAGGGAGACCGTTCTAGCTCTTCAAAGCACTAGAAAACCGATAATCACGTTCCAGAA 729
|||||||||||||| | ||||||||||||| || | |||||||||||||| ||| ||||
Sbjct 611 GCATAGGGAGACCGTACAAGCTCTTCAAAGCTCTCGTAAACCGATAATCACATTCAAGAA 670
Query 730 ACGTGGGAGAAAAGCTTCACTCCCGAAGAAGATTGATTCGAAACCAGAACCCGAACTGCC 789
|||||| |||||| |||||||||| |||||| ||||||||||||| ||||||||||||||
Sbjct 671 ACGTGGAAGAAAATCTTCACTCCCCAAGAAGTTTGATTCGAAACCGGAACCCGAACTGCC 730
Query 790 TCCTAAGGAGCCTAAAATTAAGAATCTATTTGACCTGAACAACGAACCTGAAGACAATGG 849
||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 731 TCCTAAGGAGCCTGAAATTAAGAATTTCTTTGATCTGAACAACGAACCTGAAGACAATGG 790
Query 850 ATTGGACGAAGCTGAAGGATCAACTTTTCAGGAAGTCGTACCAAAGGAGAAAGATCTTTG 909
|||||| |||||||||||||| || | ||| ||| || ||||||||||||| ||||||||
Sbjct 791 ATTGGATGAAGCTGAAGGATCGACATGTCAAGAATTCATACCAAAGGAGAACGATCTTTG 850
Query 910 TAA-ACCTATTTTCT-CTCTCTCTGT--C-ACTCTAAACATCAACGATACTCCTCCTGAT 964
||| || || | || || | | ||||||||||||||||||||||||| |
Sbjct 851 TAAGTCC--TTGGATGCTAAGGAAGTAGCGCCACTAAACATCAACGATACTCCTCCTGTT 908
Query 965 ATCGTTGAGCCTGAGATAAGTTCGGATGACGACACAGAGGAATCTGTTGAACCTATTCAG 1024
||||||||||| | | |||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 909 ATCGTTGAGCCAGTGTTAAGTTCGGATGGCGATACAGAGGAATCTGTTGAACCTATTCAC 968
Query 1025 AACAAGTGTGTTGTGAATAGAGAAACAAAGGAAGTTCCTGTTCAAGTGAATCAAAACAGT 1084
||||||||||| |||||||| |||||| ||||||| ||| ||||||||||| |||| | |
Sbjct 969 AACAAGTGTGTCGTGAATAGGGAAACAGAGGAAGTCCCTATTCAAGTGAATAAAAAAACT 1028
Query 1085 CTCCTTATTAGCTCTGATAGGGATAGAGAGGACAACTCTGGTCAGAAACTGAAGACCAAT 1144
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1029 GTCCTTATTAGCTCTGATAGGGATACAGAGGACAACTCTGGTCAGAAACTGAAGAGCAAT 1088
Query 1145 GGTGCTGCTACCTCCAGATCAAGGAAGAAGAAAGGTAAGAAACCGGTGGAAAAGAGCTAT 1204
| | |||||||||||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 1089 -G-G-TGCTACCTCCAGATCAAGGAGGAAGAAAGGGAAGAAACCGGTGGAAAAGAGTTAT 1145
Query 1205 TCTTTGAGACCCCGAATAGGCAGGAGGACGGTTAATCCAGCAGCTGGTACTACTACACCA 1264
|||||||||||||||| || | |||||||| ||||| |||||||| || ||||||||||
Sbjct 1146 TCTTTGAGACCCCGAAAAGACGGGAGGACGATTAATTCAGCAGCTAATAATACTACACCA 1205
Query 1265 GAAGCTCCGGTTTCCGTGGAAGAGGAGATGAAAGTTGAAGAAGGACGTAACAACAATCCA 1324
|||| | ||||| ||||||||||||| | ||||||| ||||||||||||| |||| ||
Sbjct 1206 GAAGTTGCGGTTACCGTGGAAGAGGAAAAGAAAGTT---GAAGGACGTAACACCAATGCA 1262
Query 1325 GTTTGGTTTTCACTAAAGCCTTCCAAGACTCAGAACATTGAAATGCTACTTCCACCGATC 1384
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 GTTTGGTTTTCGTTAATGCCTTCCAAGACTCAGAACATTGAAATGCTACTTCCACCGATC 1322
Query 1385 ACCGCTTGCTGCATAAGAGTAAAAGATAGCAACATGACTGTCTCATATCTCAAGAAGTAT 1444
| |||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1323 AACGCTCGCTGCATAAGAGTGAAAGATAGAAACATGACTGTCTCATATCTCAAGAAGTAT 1382
Query 1445 CTAATGGTGAAGCTCGGTCTCGAAAGCGAAGACCAAGTGGAGATATGGTTAAGGGATGAG 1504
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 1383 CTAATGGTGAAGCTCGGTCTCGAAAGCGAAGACCAAGTGGAGGTATGGCTAAGGAATGAG 1442
Query 1505 CCAGTGTGTTCGTCACTGACACTACATAACTTGGTGGATTGGTGGGTCCAAACAACTCCA 1564
||| |||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||
Sbjct 1443 CCATTGTGTTCGTCACTGACGCTACATAGCTTGGTGGATTGGTGGGTCCAAACTACTCCA 1502
Query 1565 TTGCCTGAGCGACAAAGCGCGATGGTCGGAAGCTCCGCTGCTGAATTCATCATGGATCTC 1624
||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||| |||||
Sbjct 1503 TTGCCTGAGCGACGAAGCGCCATGGTCGGAAGCTCCGCTGCTGATTTCCTCATGAATCTC 1562
Query 1625 TATTACAGCTTCAAATCTGACGCCTCTGACTCTGGCTCTGCCTCTGAATAA---TT---C 1678
||||||||||||||||||||||||||| ||||||||||| ||||| | || |
Sbjct 1563 CATTACAGCTTCAAATCTGACGCCTCTGGCTCTGGCTCTGGCTCTGGCTCTGGCTTTGGC 1622
Query 1679 T-T--CTC--A----GAA-----CTTC--A-AACTTTA--CT---CTTCTTCT----AAA 1712
| | ||| | ||| |||| | ||||||| || |||||||| |||
Sbjct 1623 TCTGGCTCTGACTCTGAATAATTCTTCTCAGAACTTTAAACTTTTCTTCTTCTCTTTAAA 1682
Query 1713 CTCATTTCTTGCAGAATAAGTTTC-TTTTGAAAGACTT-CTAGTTTTAGCATCTTTCTTT 1770
|||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||
Sbjct 1683 CTCATTTCTTGCAGAATAAGTTTCCTTTT-AAAGACTTGCTAGTTTTAGCATCTTTCTTT 1741
Query 1771 ATTTAATAATTGCTGAGACC 1790
||||||| ||||||||||||
Sbjct 1742 ATTTAATTATTGCTGAGACC 1761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67267372670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5