BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G23060.1 Length=1792 Score E Sequences producing significant alignments: (Bits) Value Ahg479814 jgi|Araly1|479814|fgenesh2_kg.3__2515__AT3G23060.1 1881 0.0 > Ahg479814 jgi|Araly1|479814|fgenesh2_kg.3__2515__AT3G23060.1 Length=1761 Score = 1881 bits (1018), Expect = 0.0 Identities = 1527/1760 (87%), Gaps = 86/1760 (5%) Strand=Plus/Plus Query 76 TCGATTCTCTCTGAGAAAACCAACAATAAAGCTAGACAC-ttttttttGTGGGTTTGTCT 134 ||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| Sbjct 43 TCGATTCTCTCTGAGAAAA-CACCAATAAAGCTAGACACTTTTTTTTTGTGGGTTTG--- 98 Query 135 TCTTCTTCGTTCATGCACCATGTTGTGTTACGTGAACGAAGAAGCTATATAATCAAT-AA 193 | || ||||| ||||||||||| || ||||||||||| ||||||||||||||||| || Sbjct 99 TGTTATTCGTACATGCACCATGCTGCGTTACGTGAAC---GAAGCTATATAATCAATAAA 155 Query 194 ATCTTATCGATTTGTTGAGTTTGGGAATCGGAGAGAAAGATGTTAACAAAGGTGCTTA-G 252 ||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| | | Sbjct 156 ATCTTATCGATTTGTTGTGTTTTGGAATCGGAGAGAAAGATGCTAACAAAGGTGGAGACG 215 Query 253 TAAGGAGGTTAAGCCATGCCTTGCTTGTCCAATCTGC-ACTAATCCGTTTAAGGATGCCA 311 || | |||| ||||| |||||||||| ||||| || |||| |||||||||||||| Sbjct 216 -AAAGTGGTTGAGCCAAAATTTGCTTGTCCGCTCTGCAAC-AATCGGTTTAAGGATGCCA 273 Query 312 CCACAATCTCCGAGTGTCTCCACACCTTTTGCAGGAGCTGCATTCGTAACAAGTTCATAA 371 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 274 CCACAATCTCCGAGTGTCTTCACACATTTTGCAGGAGCTGCATTCGTAACAAGTTCATAA 333 Query 372 ATGAGAGAGTGAACGCTTGTCCAGTCTGCAACGTTAACCTCGGTGTTTTTCCTCTAGAGA 431 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | | Sbjct 334 ATGAGAGAGTGAAAGCTTGTCCAGTCTGCAACGTTAACCTCGGTGTTTTTCCTCTACATA 393 Query 432 AACTTCGGTCGGATTGCACTTGGC-AGGATTTGAAGCTGAAAATCTACCGAGCAATGATG 490 ||||||||||||||| || ||||| | | ||||||||||||| || |||| |||| | Sbjct 394 AACTTCGGTCGGATTACAGTTGGCAAAG-TTTGAAGCTGAAAGTCGACCGGGCAA--A-- 448 Query 491 GAAAGCTTAAAGAAGGCAGGACCTAAAACTGTTGCAGCGTCTGTGAAATCTTCGAAAAAG 550 | | | ||| ||| | || | ||||| ||||||||||||||||||||| Sbjct 449 G--A-C----GGAA---AGG--GT-TAA--G--GCAGCCTCTGTGAAATCTTCGAAAAAG 491 Query 551 AAGAGAAAATCTCGAACTTCA-CTGCGGGTCTCTTCATCTAGAGTATCATCCTCACCTGA 609 ||| ||||||||| ||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 492 AAGGGAAAATCTCTAACTTCACCAG-TGGTCTCTTCATCTAGAGTATCATCCTCACCTGA 550 Query 610 TACTCCATTGGAACCAGCCAATGTGGTTGTGGAACCACCTAATGTGGTTGTGGAGGAGAA 669 |||||||||| ||||| ||| |||||||||||| ||||| | |||||||||||||||||| Sbjct 551 TACTCCATTGAAACCACCCATTGTGGTTGTGGAGCCACCCATTGTGGTTGTGGAGGAGAA 610 Query 670 ACATAGGGAGACCGTTCTAGCTCTTCAAAGCACTAGAAAACCGATAATCACGTTCCAGAA 729 |||||||||||||| | ||||||||||||| || | |||||||||||||| ||| |||| Sbjct 611 GCATAGGGAGACCGTACAAGCTCTTCAAAGCTCTCGTAAACCGATAATCACATTCAAGAA 670 Query 730 ACGTGGGAGAAAAGCTTCACTCCCGAAGAAGATTGATTCGAAACCAGAACCCGAACTGCC 789 |||||| |||||| |||||||||| |||||| ||||||||||||| |||||||||||||| Sbjct 671 ACGTGGAAGAAAATCTTCACTCCCCAAGAAGTTTGATTCGAAACCGGAACCCGAACTGCC 730 Query 790 TCCTAAGGAGCCTAAAATTAAGAATCTATTTGACCTGAACAACGAACCTGAAGACAATGG 849 ||||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||||| Sbjct 731 TCCTAAGGAGCCTGAAATTAAGAATTTCTTTGATCTGAACAACGAACCTGAAGACAATGG 790 Query 850 ATTGGACGAAGCTGAAGGATCAACTTTTCAGGAAGTCGTACCAAAGGAGAAAGATCTTTG 909 |||||| |||||||||||||| || | ||| ||| || ||||||||||||| |||||||| Sbjct 791 ATTGGATGAAGCTGAAGGATCGACATGTCAAGAATTCATACCAAAGGAGAACGATCTTTG 850 Query 910 TAA-ACCTATTTTCT-CTCTCTCTGT--C-ACTCTAAACATCAACGATACTCCTCCTGAT 964 ||| || || | || || | | ||||||||||||||||||||||||| | Sbjct 851 TAAGTCC--TTGGATGCTAAGGAAGTAGCGCCACTAAACATCAACGATACTCCTCCTGTT 908 Query 965 ATCGTTGAGCCTGAGATAAGTTCGGATGACGACACAGAGGAATCTGTTGAACCTATTCAG 1024 ||||||||||| | | |||||||||||| ||| |||||||||||||||||||||||||| Sbjct 909 ATCGTTGAGCCAGTGTTAAGTTCGGATGGCGATACAGAGGAATCTGTTGAACCTATTCAC 968 Query 1025 AACAAGTGTGTTGTGAATAGAGAAACAAAGGAAGTTCCTGTTCAAGTGAATCAAAACAGT 1084 ||||||||||| |||||||| |||||| ||||||| ||| ||||||||||| |||| | | Sbjct 969 AACAAGTGTGTCGTGAATAGGGAAACAGAGGAAGTCCCTATTCAAGTGAATAAAAAAACT 1028 Query 1085 CTCCTTATTAGCTCTGATAGGGATAGAGAGGACAACTCTGGTCAGAAACTGAAGACCAAT 1144 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1029 GTCCTTATTAGCTCTGATAGGGATACAGAGGACAACTCTGGTCAGAAACTGAAGAGCAAT 1088 Query 1145 GGTGCTGCTACCTCCAGATCAAGGAAGAAGAAAGGTAAGAAACCGGTGGAAAAGAGCTAT 1204 | | |||||||||||||||||||| ||||||||| |||||||||||||||||||| ||| Sbjct 1089 -G-G-TGCTACCTCCAGATCAAGGAGGAAGAAAGGGAAGAAACCGGTGGAAAAGAGTTAT 1145 Query 1205 TCTTTGAGACCCCGAATAGGCAGGAGGACGGTTAATCCAGCAGCTGGTACTACTACACCA 1264 |||||||||||||||| || | |||||||| ||||| |||||||| || |||||||||| Sbjct 1146 TCTTTGAGACCCCGAAAAGACGGGAGGACGATTAATTCAGCAGCTAATAATACTACACCA 1205 Query 1265 GAAGCTCCGGTTTCCGTGGAAGAGGAGATGAAAGTTGAAGAAGGACGTAACAACAATCCA 1324 |||| | ||||| ||||||||||||| | ||||||| ||||||||||||| |||| || Sbjct 1206 GAAGTTGCGGTTACCGTGGAAGAGGAAAAGAAAGTT---GAAGGACGTAACACCAATGCA 1262 Query 1325 GTTTGGTTTTCACTAAAGCCTTCCAAGACTCAGAACATTGAAATGCTACTTCCACCGATC 1384 ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1263 GTTTGGTTTTCGTTAATGCCTTCCAAGACTCAGAACATTGAAATGCTACTTCCACCGATC 1322 Query 1385 ACCGCTTGCTGCATAAGAGTAAAAGATAGCAACATGACTGTCTCATATCTCAAGAAGTAT 1444 | |||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1323 AACGCTCGCTGCATAAGAGTGAAAGATAGAAACATGACTGTCTCATATCTCAAGAAGTAT 1382 Query 1445 CTAATGGTGAAGCTCGGTCTCGAAAGCGAAGACCAAGTGGAGATATGGTTAAGGGATGAG 1504 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct 1383 CTAATGGTGAAGCTCGGTCTCGAAAGCGAAGACCAAGTGGAGGTATGGCTAAGGAATGAG 1442 Query 1505 CCAGTGTGTTCGTCACTGACACTACATAACTTGGTGGATTGGTGGGTCCAAACAACTCCA 1564 ||| |||||||||||||||| ||||||| |||||||||||||||||||||||| |||||| Sbjct 1443 CCATTGTGTTCGTCACTGACGCTACATAGCTTGGTGGATTGGTGGGTCCAAACTACTCCA 1502 Query 1565 TTGCCTGAGCGACAAAGCGCGATGGTCGGAAGCTCCGCTGCTGAATTCATCATGGATCTC 1624 ||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||| ||||| Sbjct 1503 TTGCCTGAGCGACGAAGCGCCATGGTCGGAAGCTCCGCTGCTGATTTCCTCATGAATCTC 1562 Query 1625 TATTACAGCTTCAAATCTGACGCCTCTGACTCTGGCTCTGCCTCTGAATAA---TT---C 1678 ||||||||||||||||||||||||||| ||||||||||| ||||| | || | Sbjct 1563 CATTACAGCTTCAAATCTGACGCCTCTGGCTCTGGCTCTGGCTCTGGCTCTGGCTTTGGC 1622 Query 1679 T-T--CTC--A----GAA-----CTTC--A-AACTTTA--CT---CTTCTTCT----AAA 1712 | | ||| | ||| |||| | ||||||| || |||||||| ||| Sbjct 1623 TCTGGCTCTGACTCTGAATAATTCTTCTCAGAACTTTAAACTTTTCTTCTTCTCTTTAAA 1682 Query 1713 CTCATTTCTTGCAGAATAAGTTTC-TTTTGAAAGACTT-CTAGTTTTAGCATCTTTCTTT 1770 |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||| Sbjct 1683 CTCATTTCTTGCAGAATAAGTTTCCTTTT-AAAGACTTGCTAGTTTTAGCATCTTTCTTT 1741 Query 1771 ATTTAATAATTGCTGAGACC 1790 ||||||| |||||||||||| Sbjct 1742 ATTTAATTATTGCTGAGACC 1761 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67267372670 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5