BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23080.1
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319027 jgi|Araly1|319027|fgenesh1_pm.C_scaffold_3002043 1657 0.0
Ahg493456 jgi|Araly1|493456|fgenesh2_kg.7__2889__AT4G14500.1 787 0.0
> Ahg319027 jgi|Araly1|319027|fgenesh1_pm.C_scaffold_3002043
Length=1284
Score = 1657 bits (897), Expect = 0.0
Identities = 1173/1298 (90%), Gaps = 52/1298 (4%)
Strand=Plus/Plus
Query 90 ATGGATATTTTCATGGATTTCTTCAATAAACCTTCTGTTACAGAGACATTCGTCGACGTT 149
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGATATGTTCATGGATTTCTTCAATAAACCTTCTGTTACAGAAACATTCGTCGACGTT 60
Query 150 TTGCTATGTGCAGTTCCGATTTGGGTCACTGTTATGATCGGGCTTCTGATCGGTTGGTCT 209
||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct 61 TTGCTATGTGCAGTTCCGATTTGGGTCGCTGTTATGATCGGGCTTTTGATTGGTTGGTCT 120
Query 210 TGGCGTCCTAGATGGACTAGCTTGGTTTATTTAGGTTTCCGTTCTAAGCTTCGGTTTCTA 269
|||||||| ||||||||| ||||| |||||||||| |||||||| |||||||||||||||
Sbjct 121 TGGCGTCCAAGATGGACTGGCTTGTTTTATTTAGGGTTCCGTTCGAAGCTTCGGTTTCTA 180
Query 270 -TGTACTGTTCCTCCTGGATTTGGTGCTCGTCGTATTTGGCTTGCTTTCACCG--CTCTC 326
|| |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 181 TTG-ACTGCTCCTCCTGGTTTTGGTGCTCGTCGTATTTGGCTTGCTTTCACCGCTCTCTC 239
Query 327 -------T-C-----T-G--CT-TTT--TC-CG--TTTGTTCAACCTCCAATAAATCCTC 364
| | | | || ||| || | | |||| || ||||| | ||| ||
Sbjct 240 TGTTTTTTCCGTTTGTCGTACTCTTTGGTCAAGACTCGGTTCTACTTCCAAGAGATCGTC 299
Query 365 GGTTAATAACGG--T---T-C--C-TCTAAACCGGTCGAAGAAGAAGCATTTTCACGAGC 415
|||||||||||| | | | | ||||||||||| || ||||||| | ||
Sbjct 300 GGTTAATAACGGTTTAGCTCCGTCGTCTAAACCGGTTGAGGAAGAAG--------C-AGT 350
Query 416 TAGTGATAAAGTTACAGAGAAAGAGAAAGATGTTGTGACAGAGAAGGATTTAGAGCATTT 475
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 351 TAGTGATAAAATTACAGAGAAAGAGCCAGATGTTGTGACAGAGAAGGATTTAGAGCATTT 410
Query 476 GTTGCATCTGCTTGAAGCTGGAAATGCTAGTTTTGAGTGGCAATCTATGATGGATAAGTC 535
|||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 411 GTTGTATCTCCTTGAAGCTGGAAATGCTAATTTGGAGTGGCAATCTATGATGGATAAGTC 470
Query 536 TACTCCGAATATGAGCTATCAAGCTTGGCGTCATGAGCCTGAGA-TAGGTCCTGTTGTTT 594
|||||| |||||||| |||||||||||||| ||||||||||||| | |||||||||||||
Sbjct 471 TACTCCTAATATGAGTTATCAAGCTTGGCGACATGAGCCTGAGACT-GGTCCTGTTGTTT 529
Query 595 ATCGTAGTCGAACTGTTTTTGAGGATGTAACACCAGACATTGTTAGGGATTTCTTCTGGG 654
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 530 ATCGTAGTCGAACTGTTTTTGAGGATGCAACACCAGACATTGTTAGGGATTTCTTCTGGG 589
Query 655 ACGATGAGTTTCGACCTAAATGGGATACTATGCTTGCTTACTTCAAAACTTTAGAGGAAG 714
|||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||
Sbjct 590 ACGATGAGTTTCGACCTAAATGGGATCCTATGCTTGCTTACTTCAAAACCTTGGAGGAAG 649
Query 715 ATCCTAAGACAGGAACTACCATTGTTCATTGGATTAAAAAGTTCCCATTCTTCTGTAGTG 774
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 650 ATCCTAAGACAGGAACTACCATTGTTCACTGGATCAAAAAGTTCCCATTTTTCTGTAGTG 709
Query 775 ACCGGGAATACATCATTGGTAGGAGAATATGGGAATCTGGAAGAAAA-TATTATGCTGTG 833
||||||||||||| ||||| |||||||||||||| ||||||| |||| ||||||||||||
Sbjct 710 ACCGGGAATACATTATTGGCAGGAGAATATGGGAGTCTGGAA-AAAAGTATTATGCTGTG 768
Query 834 ACTAAGGGAGTACCGTATAAAGCTTTATCAAAGCGTGATAAGCCGAGGCGAGTCGAACTT 893
|| ||||||||||| ||| ||||| || ||||||||||||||||||||||||| || |||
Sbjct 769 ACAAAGGGAGTACCTTATCAAGCTCTACCAAAGCGTGATAAGCCGAGGCGAGTTGAGCTT 828
Query 894 TATTTCTCAAGTTGGATTATCAATGCAGTTGAATCAAGAAA-AGGTGATGGGCAAATGA- 951
|||||||||||||||||||| || ||||||||||| ||||| ||| ||||||| | | |
Sbjct 829 TATTTCTCAAGTTGGATTATTAAAGCAGTTGAATCCAGAAAGAGG-GATGGGC-AGTTAT 886
Query 952 CAGCTTGTGAAGTCTCTCTTGTTCACTACGAAGACATGGGAATCCCAAAAGATGTAGCAA 1011
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 887 CAGCTTGTGAAGTCTCTCTTGTCCACTACGAAGACATGGGAATCCCAAAAGATGTAGCAA 946
Query 1012 AGTTAGGAGTCCGTCATGGCATGTGGGGAGCTGTAAAGAAGCTAAACTCTGGCTTAAGGG 1071
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 947 AGTTAGGAGTCCGTCATGGCATGTGGGGAGCTGTAAAGAAGCTAAACTCTGGTTTGAGGG 1006
Query 1072 CGTACCAAAGCGCTAGAAAACCTGGGACGTCGCTCTCACGGAGTGCGCAGATGGCAAGTA 1131
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1007 CATACCAAAGCGCTAGAAAACCTGGGACGTCTCTCTCACGGAGTGCGCAGATGGCAAGTA 1066
Query 1132 TCACCACAAAGCTGAACATGGATTTGGTGGAAACATCTGGGGCAGAGGACGAAGAGAGAG 1191
|||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1067 TCACCACAAAACTGAACATGGATTTGGTGGAAACATCTGGAGCAGAGGAAGAAGAGAGAG 1126
Query 1192 GACGAGCAGTAGAGAATGCGAGGAAACAAAATGATCAGTTCGGTGTAGACTGGAAATGGA 1251
|||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||||||
Sbjct 1127 GACGAGCAGTGGAGAATGCGAGGAAACAAAAAGATCAGTTCAGTGTAGATTGGAAATGGA 1186
Query 1252 TCGTTGTAGGAGGAGTAGCTTTGGCTTGTGGGCTTCATTCTAGTGCTATAGGTAAGGCGT 1311
| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1187 TTGTTGTAGGAGGAGTGGCTTTGGCTTGTGGGCTTCATTCTAGTGCTATAGGCAAGGCGT 1246
Query 1312 TAATGGTTGGAGCTGGACAGAGACTTGCTCGTAGGTGA 1349
| |||||||||||||| || ||||||||||||||||||
Sbjct 1247 TGATGGTTGGAGCTGGGCACAGACTTGCTCGTAGGTGA 1284
> Ahg493456 jgi|Araly1|493456|fgenesh2_kg.7__2889__AT4G14500.1
Length=1711
Score = 787 bits (426), Expect = 0.0
Identities = 762/921 (83%), Gaps = 36/921 (4%)
Strand=Plus/Plus
Query 444 GATGTTGTGACAGAGAAGGATTTAGAGCATTTG-TTGC-ATCTGCTTGAAGCTGGAAATG 501
||| ||||||||||||| |||||||||||| || || | || ||||||||| ||| ||||
Sbjct 559 GATATTGTGACAGAGAATGATTTAGAGCATCTGCTT-CAAT-TGCTTGAAGTTGGGAATG 616
Query 502 CTAG-TTTTGAGTGGCAATCTATGATGGATAAGTCTACTCCGAATATGAGCTATCAAGCT 560
| || | | || ||||||||||||||||||||| ||||||| || |||||||| || |||
Sbjct 617 C-AGCTATGGAATGGCAATCTATGATGGATAAGACTACTCCAAACATGAGCTACCAGGCT 675
Query 561 TGGCGTCATGAGCCTGAGATAGGTCCTGTTGTTTATCGTAGTCGAACTGTTTTTGAGGAT 620
||||||||||||||||||| |||||||||| ||||||| ||||||||||| |||||||||
Sbjct 676 TGGCGTCATGAGCCTGAGACAGGTCCTGTTATTTATCGCAGTCGAACTGTGTTTGAGGAT 735
Query 621 GTAACACCAGACATTGTTAGGGATTTCTTCTGGGACGATGAGTTTCGACCTAAATGGGAT 680
| ||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 736 GCAACTCCAGATATTGTTAGGGATTTCTTCTGGGATGATGAGTTTCGACCTAAATGGGAT 795
Query 681 ACTATGCTTGCTTACTTCAAAACTTTAGAGGAAGATC-CTAAGACAGGAACTACCATTGT 739
||||||||| ||||||||||||| ||||| || | || |||||||||| | |||||
Sbjct 796 TTTATGCTTGCCAACTTCAAAACTTTGGAGGAGGA-CACTCAGACAGGAACGATGATTGT 854
Query 740 TCATTGGATTAAAAAGTTCCCATTCTTCTGTAGTGACCGGGAATACATCATTGGTAGGAG 799
||| |||| |||||||| ||||| ||||| || ||||| || || |||||||| ||||
Sbjct 855 TCAGTGGAGAAAAAAGTTTCCATTTTTCTGCAGCGACCGAGAGTATATCATTGGCCGGAG 914
Query 800 AATATGGGAATCTGG-AAGAAAATATTA-TGCTGTGACTAAGGGAGTACCGTATAAAGCT 857
||||||||| ||||| ||| || ||||| || |||||| |||||||| || ||| ||||
Sbjct 915 AATATGGGAGTCTGGAAAG-AAGTATTACTG-TGTGACAAAGGGAGTTCCTTATCCAGCT 972
Query 858 TTATCAAAGCGTGATAAGCCGAGGCGAGTCGAACTTTATTTCTCAAGTTGGATTATCA-A 916
|| |||||||||||||||||||||| || || |||||||||||||||||| |||||| |
Sbjct 973 CTACCAAAGCGTGATAAGCCGAGGCGTGTTGAGCTTTATTTCTCAAGTTGGGTTATCAGA 1032
Query 917 TGCAGTTGAATCAAGAAAAGGTGATGGGCAAATGACAGCTTGTGAAGTCTCTCTT-GTTC 975
||||||||||| ||||||| ||| || | | |||||||||||||| || ||| || |
Sbjct 1033 -GCAGTTGAATCCCGAAAAGGAGAT-GG--ACTAACAGCTTGTGAAGTATC-CTTAGTCC 1087
Query 976 ACTACGAAGACATGGGAATCCCAAAAGATGTAGCAAAGTTAGGAGTCCGTCATGGCATGT 1035
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1088 ACTACGAAGACATGGGAATCCCAAAAGATGTAGCAAAGTTAGGTGTCCGTCATGGCATGT 1147
Query 1036 GGGGAGCTGTAAAGAAGCTAAACTCTGGCTTAAGGGCGTACCAAAGC-GCTAGAAAACCT 1094
||||||||||||||||||||||||| || ||| | || |||||| | || |||||| |
Sbjct 1148 GGGGAGCTGTAAAGAAGCTAAACTCCGGTTTACGAGCATACCAAT-CTGCCAGAAAATCA 1206
Query 1095 GGGACGTCGCTCTCACGGAGT-GCGCAGATGGCAAGTATCACCACAAAGCTGAACATGGA 1153
| | || || || |||| | || || |||||||| ||||| ||||| |||||||||||
Sbjct 1207 GACTCATCTCTATCCCGGA-TCGCCCAAATGGCAAGAATCACTACAAAACTGAACATGGA 1265
Query 1154 TT-TGGTGGAAACATCTGGGGCA-GAGGACGAAGAGAGAGG-ACGAGCAGTAGAGAATGC 1210
|| || | || ||||| || ||| | ||||| ||| | | ||||| | || ||||
Sbjct 1266 TTCTGCAG-AATCATCTT---CAAGAG-ATGAAGACAGAAGCA-GAGCAATGGACTATGC 1319
Query 1211 GAGGAAACAAAATGATCAGTTCG-GTGTAGACTGGAAATGGATCGTTGTAGGAGGAGTAG 1269
|||| |||| || || || | | | |||||||||||| | ||||||||||| || |
Sbjct 1320 AAGGAGACAACGGGACCATTT-GAGAATGGACTGGAAATGGGTTGTTGTAGGAGGTGTCG 1378
Query 1270 CTTTGGCTTGTGGGCTTCATTCTAGTGCT-ATAGGTAAGGCGTTAATGGTTGGAGCTGGA 1328
| ||||||||||| ||||| || | | | || |||||||| ||| ||| |||||||||
Sbjct 1379 CATTGGCTTGTGGTCTTCACACTGG-GATCATTGGTAAGGCTTTACTGGCTGGAGCTGGC 1437
Query 1329 CAGAGACTTGCTCGTAGGTGA 1349
|||||||| || |||||||||
Sbjct 1438 CAGAGACTGGCGCGTAGGTGA 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58963699260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5