BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23100.1
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479818 jgi|Araly1|479818|fgenesh2_kg.3__2519__AT3G23100.1 1219 0.0
> Ahg479818 jgi|Araly1|479818|fgenesh2_kg.3__2519__AT3G23100.1
Length=823
Score = 1219 bits (660), Expect = 0.0
Identities = 769/823 (93%), Gaps = 2/823 (0%)
Strand=Plus/Plus
Query 37 ATTATGATCGGAGTTGACTCAAAATCTTCGTCGACGACTTTTA-TCG-AAACAATGGTTG 94
||||||||||||||||||||||||||||||||| ||||||| | | | ||||||||||||
Sbjct 1 ATTATGATCGGAGTTGACTCAAAATCTTCGTCGGCGACTTTGATTTGAAAACAATGGTTG 60
Query 95 AATCGGAGAAAACGAAACACACTTGTCTCCGTCTCGAAATCTCCGGCGCCGATCCAATTT 154
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 61 AATCGGAGAAAACGAAACACACATGTCTCCGACTCGAAATCTCCGGCGCCGATCCAATTT 120
Query 155 TCGTCAAAGGCACTTGGCATAATTCTCGTTTCGATATCTCCGTCACCGATGGTTCCTCCT 214
|||||||||| |||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 121 TCGTCAAAGGAACTTGGCACCACTCTCGTTTCGATATCTCCGTCACCGATGGCTCCTCCT 180
Query 215 CTTGGATTTGCAATGCGACGGAGGAGGAAGTGGCGGAGAGAGCAGCACAATGGGACCAGC 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 CTTGGATTTGCAATGCGACGGAGGAGGAAGTGGCGGAGAGAGCAGCACAATGGGATCAGC 240
Query 275 CTGTGTCAGAGTATTTAAAGCTCGCCGAGCAATACTTAGGGTTTCAACAACCTAATTCGG 334
|||| || ||||||||| ||||||| || | ||||||||||||||||| || ||||| |
Sbjct 241 CTGTATCGGAGTATTTAGAGCTCGCTGAACGTTACTTAGGGTTTCAACAGCCAAATTCTG 300
Query 335 TCTATAGTTTCTCCGATGCTCTAGAGGGATCTAAACGGCTCTCTTGGACGTTTGAGAAGG 394
||||| | ||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTATGGATTCTCTGATGCTCTTGAGGGATCTAAACGGCTCTCTTGGACGTTTGAGAAGG 360
Query 395 AAGGGACTAAACTTGAGTGGAGGTGGAAATGTAAACCATCAGATGATAGCAAGAAGATCA 454
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 361 AAGGGACTAAACTTGAGTGGAGGTGGAAGTGTAAACCATCACATGATAGCAAGAAGATCA 420
Query 455 CTGTTGGGATCTTGGATTTTCTTATGGAGGCTAACATAAGGCTAAGTGAAGAAGTGGTGA 514
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 421 CTGTTGGGATCTTGGATTTTCTTATGGAGGCTAATATAAGGCTAAGTGAAGAAGTTGTGA 480
Query 515 ACAAGACGAGATCTTTTGAGAAGATGAGAAGTGAAGCTGAGAGATGTCTAGCGCAAGGTG 574
||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||
Sbjct 481 ACAAGACGAGATCTTTTGAGAAGATGAAAAGTGAAGCTGAGAGATGTCTCGCACAAGGTG 540
Query 575 AAAAACTCTGTGACGAAAAAACAGAGTTTGAGAGTGCAACTTATGCAAAGTTTCTTTCTG 634
|||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 541 AAAAACTCTGCGATGAAAAAACAGAGTTTGAGAATGCAACTTATGCAAAGTTTCTTTCTG 600
Query 635 TTTTAAATGCAAAGAAGGCAAAACTGAGAGCACTAAGGGACAAAGAAGATTCAGTGAGAG 694
|||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 601 TTTTAAATTCAAAGAAGGCGAAACTGAGAGCACTAAGGGACAAAGGAGATTCAGTGAGAG 660
Query 695 TAGTTGAGGAGGAAGAGTCGACAGACAAAGCTGAAAGCTTTGAGAGTGGAAGAAGTGATG 754
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 661 CAGTTGAGGAGGAAGAGTCGACAGACAAAGCTGAAAGCTTTGACAGTGGAAGAAGTGACA 720
Query 755 ATGAGAAGAGCGAGGAAGAAGCCTCAAAAAAGGCAACAAGCAGCAAAGCCCGTGGCGGGA 814
||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| | |
Sbjct 721 ATGAGCAGAGCGAGGAAGAAGCCTCAAAGAAGGCATCAAGCAGCAAAGCCCGTGGCCGAA 780
Query 815 AGAGAGCTGCACGAAGCTAAGAGATTGCCCTGCCGTGAGATTT 857
||||||||| ||| |||||| ||||| ||||||| ||||||||
Sbjct 781 AGAGAGCTGTACGCAGCTAAAAGATTCCCCTGCCTTGAGATTT 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36826737822
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5