BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23110.1
Length=2508
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930319 jgi|Araly1|930319|scaffold_302776.1 1393 0.0
Ahg479821 jgi|Araly1|479821|fgenesh2_kg.3__2522__AT3G23110.1 1173 0.0
> Ahg930319 jgi|Araly1|930319|scaffold_302776.1
Length=2415
Score = 1393 bits (754), Expect = 0.0
Identities = 1298/1552 (84%), Gaps = 72/1552 (5%)
Strand=Plus/Plus
Query 962 CTAGTTCTATATCGAAATTAGTCAATCTCGATGGTTTATA-TCTTAGCCATAATAACTTC 1020
|||| ||||||| |||||||||||||||||| ||||| | ||||||||| || || ||
Sbjct 852 CTAGATCTATATGGAAATTAGTCAATCTCGAACGTTTA-AGTCTTAGCCAAAACAATTTT 910
Query 1021 GGAGGACAAGTCCCTAGCTCTATATTTAAATTAGTCAATCTCGAACATTTAGATCTTAGC 1080
||||||| ||||||||| ||||||| ||| ||||||||||| ||| ||||||||||||||
Sbjct 911 GGAGGACGAGTCCCTAGATCTATATCTAAGTTAGTCAATCTTGAATATTTAGATCTTAGC 970
Query 1081 CACAACGATTTCGGAGGACGAGTCCCTAGCTCTATATCAAAATTAGTCAACCTCAGTTCC 1140
|||||| |||||| || || | ||||||| |||||||| || |||| |||||||| ||||
Sbjct 971 CACAACAATTTCGAAGAACTATTCCCTAGATCTATATCTAAGTTAGCCAACCTCACTTCC 1030
Query 1141 CTTGATCTTTCCTACAACAAGTTTGAAGGTCATGTACCTCAATGT-ATATGGAGATCTTC 1199
|||||| |||||||||||||||| |||||||| ||||||| || | ||||||||| ||||
Sbjct 1031 CTTGATATTTCCTACAACAAGTTGGAAGGTCAAGTACCTC-ATTTAATATGGAGACCTTC 1089
Query 1200 TAAGTTAG-ATTCAGTGGATCTTTCTTATAATTCTTTCAACAGTTTCGGCAGAAT-TCTA 1257
|||||| | | || |||||||||||| ||||||| ||||||| || |||| ||| | |
Sbjct 1090 TAAGTT-GCAATCTGTGGATCTTTCTCATAATTCGTTCAACAACTTGGGCA-AATCTGTG 1147
Query 1258 GAACTTGGGGATGAATC--A-TTAGAAAGAGATTGGGATCTTAGCTCAAATTCCCTCCAA 1314
||| ||| ||| | | |||| | | || | ||||| | |||||||| ||||||
Sbjct 1148 GAAGTTGTCAATGGGGCAAAGTTAG-GTG-GGTT-GAATCTTGGTTCAAATTCACTCCAA 1204
Query 1315 GGACCAATTCCCCAATGGATCTGCAACTTCAGAttt-ttttCCTTCTTAGATTTTTCCAA 1373
|||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||| |
Sbjct 1205 GGACCAATTCCCCAATGGATCTGCAACTTCAGATTTGTTTT-CTTCTTAGATTTGTCCGA 1263
Query 1374 CAACCATCTT-AATGGCTCAATTCCACAATGTTTGAAGAATTCCACTGATTTCT-ACATG 1431
||||| | || | ||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 1264 CAACCGT-TTCACTGGCTCAATTCCACAATGTTTGAAGAATTCCACTGATTT-TAATACG 1321
Query 1432 TTAAATCTGCGAAACAACAGTCTAAGTGGATTTATGCCAGACTTCTGCATGGATGGCTCA 1491
||||||||||||||||||||||||||||||||| ||||||| || ||||||||| || |
Sbjct 1322 TTAAATCTGCGAAACAACAGTCTAAGTGGATTTCTGCCAGAGTTGTGCATGGATAGCACT 1381
Query 1492 ATGTTGGGATCACTTGATGTCAGCCT-CAACAATTTGGTGGGGAAACTTCCAGAATCTTT 1550
||||| |||||||||||||||| || |||||||||||||||||| |||||| |||||||
Sbjct 1382 ATGTTACGATCACTTGATGTCAG-CTACAACAATTTGGTGGGGAAGCTTCCAAAATCTTT 1440
Query 1551 CATCAACTGTGAGTG-GATGGAATATCTTAATGTGAGAGGAAACAAGATCAAAGACACGT 1609
|| || || || | ||||||| ||| ||||||||||||||||||||||| |||||||
Sbjct 1441 GATGAATTGCCAG-GATATGGAATTTCTGAATGTGAGAGGAAACAAGATCAAGGACACGT 1499
Query 1610 TTCCAGTCTGGTTGGGATCTCTACAATACCTAACGGTTCTTGTGCTCCGATCAAATACAT 1669
||||| | |||||||| |||| ||| ||||| |||||||||||| ||||||||| |||
Sbjct 1500 TTCCATTTTGGTTGGGCTCTCGGGAATCCCTAATGGTTCTTGTGCTACGATCAAATGCAT 1559
Query 1670 TCTATGGTCCAGTCTATAAGGCCTCTGCCTACTTAGGCTTTCCAAGCATGCGGATCATGG 1729
||||||||||||||||||| |||||||||| || || |||||| || || | ||||| |
Sbjct 1560 TCTATGGTCCAGTCTATAACTCCTCTGCCTATTTGGGGTTTCCACGCCTGAGTATCATTG 1619
Query 1730 ACATATCGAATAACAACTTCGTTGGATCATTGCCACAAGACTATTTTGCCAACTGGACTG 1789
||||||| ||||| | |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1620 ACATATCCAATAATGATTTCGTTGGATCATTACCACAAGACTATTTTGCCAATTGGACTG 1679
Query 1790 AAATGTCATCGGTAT-GG----CAA-CGAC----CTATGC---TCACACTTGATTACAA- 1835
|||||||| |||| | || ||| |||| ||| || |||||| | |||
Sbjct 1680 AAATGTCAACGGTGTGGGATATCAATCGACTGAACTACGCAAGAAACACTT-CCT-CAAG 1737
Query 1836 AA-G--A-AATAT---AG-C-T---A-TA-CC-AGGGTCAAACTACATGGGAGATGA--T 1878
|| | | ||||| | | | | || || | |||| |||||| |||| ||| | |
Sbjct 1738 AACGATACAATATGGGGGACTTCAAACTATCCAAAGGTCGAACTACGTGGGGGATAATTT 1797
Query 1879 -AA--T-CAT-CAAGATTCAATTGATTTGGTGTATAAAGGAGTAGACACAGATTTCGAA- 1932
|| | ||| | |||||| |||||||||| ||| |||||||||||||||||||| ||
Sbjct 1798 CAATTTGCATGC-AGATTCGATTGATTTGGCGTACAAAGGAGTAGACACAGATTT-TAAT 1855
Query 1933 CAAATCTTTGGAGGCTTTAAAGTCATAGATTTTTCTGGAAACCGATTCTCTGGACATATC 1992
| |||||| ||||||| |||||||| |||||||| |||||||||||||| |||||||||
Sbjct 1856 CGGATCTTTCGAGGCTTCAAAGTCATTGATTTTTCGGGAAACCGATTCTCCGGACATATC 1915
Query 1993 CCTAG-ATCCATTGGTCTATTGAGCGAATTGCTTCATCTCAACTTGTCAGGCAATGCATT 2051
||| | |||||||||||| ||||||||||||| || |||||||||||| |||||||||||
Sbjct 1916 CCT-GAATCCATTGGTCTTTTGAGCGAATTGCGTCTTCTCAACTTGTCCGGCAATGCATT 1974
Query 2052 CACAGGAAACATCCCACCATCTTTGGCTAGTATTACAAAGCTCGAGACGCTAGACCTATC 2111
|||||| |||||||| ||||| ||||| | ||| |||| |||||||| ||||||||||
Sbjct 1975 CACAGGCAACATCCCTCCATCCTTGGCAAATATCACAACCCTCGAGACATTAGACCTATC 2034
Query 2112 GCGAAACAACTTGTCAGGTGAAATTCCTCGAGGTCTCGGGAAACTCTCGTTTCTCTCCAA 2171
|||||| |||||||||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct 2035 GCGAAATAACTTGTCAGGTGAAATTCCTCAAAGTCTCGGGAAACTCTCGTTTCTGTCCAA 2094
Query 2172 CATCAACTTCTCCCACAACCATCTAGAGGGATTGGTGCCACAAAGCACACAGTTTGGAAG 2231
|||||||||||||||||| |||||| | ||||| ||||||| |||||||||||||||||
Sbjct 2095 CATCAACTTCTCCCACAATCATCTACAAGGATTTGTGCCACGGAGCACACAGTTTGGAAG 2154
Query 2232 TCAAAATTGTTCTTCATTCATGGGTAATCCCAGACTCTATGGACTCGATC-AAATTTGTG 2290
||||||||||||||||||| ||||||||| |||||||||| ||||| | |||||||||
Sbjct 2155 TCAAAATTGTTCTTCATTCGCGGGTAATCCTGGACTCTATGGCCTCGA-CGAAATTTGTG 2213
Query 2291 GAGAAA-CC--CATGTCCCCATACCTACATCGCTGCACCCCGAGGAACCTTTGTTGGAAC 2347
|||||| || ||||| || | |||||||| | ||| | || || ||| || ||||
Sbjct 2214 GAGAAAGCCATCATGTTCCTGTTCCTACATCTCAGCAACATGATGAGTCTTCGTCAGAAC 2273
Query 2348 CGGAAGAGACAGTTCTGAACTGGATAGCAGCTGCAATAGCATTTGGACCTGGTGTGTTTT 2407
| |||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2274 CAGAAGAGCCAGTGCTGAACTGGATAGCAGCTGCAATAGCGTTTGGACCTGGTGTGTTTT 2333
Query 2408 GTGGATTAGTGATTGGACATATTTTCACTTCATACAAGCACAAGTGGCTTAT 2459
||||||||||||| ||||| || |||||||||||||| ||| |||| ||||
Sbjct 2334 GTGGATTAGTGATCGGACACATCTTCACTTCATACAAACACTTGTGGTTTAT 2385
Score = 809 bits (438), Expect = 0.0
Identities = 846/1032 (82%), Gaps = 72/1032 (7%)
Strand=Plus/Plus
Query 1 ATGGTTCGAAACCAATCTCGTTGCTTTCTTGGTATTATTATTACCAtct-ctttctt-tt 58
||| || ||| ||||||| ||||||||||||||||||||||||||||| | ||||| ||
Sbjct 23 ATGATTAGAAGCCAATCTTATTGCTTTCTTGGTATTATTATTACCATCTAC-TTCTTCTT 81
Query 59 tctttcttctttcCTTACCAAACA-CTTTCGCTTCTCCCACACGGTCTTTGTGCCGCAGC 117
| | ||||||| |||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 82 T-TGTCTTCTTCCCTTACCAAACACCTTT-GCTTCTCCCACACGGTCTTTGTGCCGCAGG 139
Query 118 GACCAAAGAGATGCTCTTTTGGAGCTaaaaaaaGAGTTCCCGATCCATTCCAACGGGAGC 177
|||||||||||||||||||||||| || |||||||||||||||||| || | || |
Sbjct 140 GACCAAAGAGATGCTCTTTTGGAGATACAAAAAGAGTTCCCGATCCCTT-C--CGTTA-- 194
Query 178 CATCATGTAACAACACTTTCTTGGAACAAGACCGTTGATTGTTGTTCTTGGGAG-GGTGT 236
| | | || || | | | |||||||||| | |||| ||||||||||||| | || ||
Sbjct 195 C-T--T-TAGGAA-A--TCCGTGGAACAAGAGCATTGACTGTTGTTCTTGGG-GTGGAGT 246
Query 237 CACATGTGATGCTA-CATTAGGAGAGGTGATATCACTTAATCTC-GTTTCC-TA-TATTG 292
||| |||||||||| | || ||||||||||||||||| || ||| ||||| || || ||
Sbjct 247 CACGTGTGATGCTATC-TTGGGAGAGGTGATATCACTAAAACTCTATTTCCTTAGTACTG 305
Query 293 CCAACACCTCTTTGAAATCTAGCAGTAGTCTTTTTAAACTCCGACATCTT-CGTCACCTA 351
| | |||||||||||||||||| ||| ||||||||||||| ||||||| | |||||||
Sbjct 306 CTAGCACCTCTTTGAAATCTAGTAGTGGTCTTTTTAAACTGAAACATCTTAC-TCACCTA 364
Query 352 GAGCTTTCACATTGCAATCTCCAAGGAGAGATTCCTTCTTCAATTGGAAATCTTTCTCAT 411
|| |||||| |||||||||||||||| ||||||||||||||||||| ||||||||| |||
Sbjct 365 GACCTTTCAGATTGCAATCTCCAAGGGGAGATTCCTTCTTCAATTGAAAATCTTTCCCAT 424
Query 412 CTCACATATCTTGATCTTTCT-TTCAATCAATTAGTAGGTGAATTTCCGGTTTCGATAGG 470
||| || |||||||||||||| | ||||| |||||||||||| |||| | ||| || ||
Sbjct 425 CTCGCACATCTTGATCTTTCTAGT-AATCACTTAGTAGGTGAAATTCCCGCTTCAATCGG 483
Query 471 TAACCTAAACCAACTAGAATACATAGATCTTTGGGTTAATGCT-CTCGGAGGTAATATTC 529
||||||||||||||||||||||||||||||| ||| ||| | ||| |||||||||||
Sbjct 484 TAACCTAAACCAACTAGAATACATAGATCTTAGGGGAAAT-CAACTCATAGGTAATATTC 542
Query 530 CTACTTCATTTGCCAACTTAACAAAGCTTTCTGAATTGCACCTCCGTCAAAA-TCAATTC 588
||||||||||||| |||||||| ||||||||| |||| |||||| ||||| |||||||
Sbjct 543 CTACTTCATTTGCAAACTTAACCAAGCTTTCTCTATTGGACCTCCA-CAAAAATCAATTC 601
Query 589 ACGGGTGGGGATATAGTATTATCCAACTTAACTAGCTT-GTCCATTGTAGACCTCTCCTC 647
||||||||||||||||||||| |||||||||| ||||| | ||||| |||||||||||||
Sbjct 602 ACGGGTGGGGATATAGTATTAGCCAACTTAACCAGCTTAG-CCATTATAGACCTCTCCTC 660
Query 648 CAATTACTTCAACTCCA-CGATTTCTGCTGACCTTA-GTCAACTCCACAACTTAGAGCGA 705
|||| ||||||| ||| | |||| ||||| ||| || |||||||||| | |||| |
Sbjct 661 CAATCACTTCAAATCCTTCT-TTTCCGCTGAT-TTAAGTGGACTCCACAACCTGGAGCAA 718
Query 706 -T-TTTGGGTGTCTGAGAACTCATTTTTTGGACCTTTTCCCTCATTCTTGCTCATGATTC 763
| |||||| || || ||||||||| | |||||||||||||||| |||||||||||||
Sbjct 719 ATCTTTGGGGGT--GAAAACTCATTTGTCGGACCTTTTCCCTCATCCTTGCTCATGATTT 776
Query 764 CTTCGTTAGTCGATATTTGTTTAAGTGAAAACCAATTCGAAGGACCTATTAATTTTGGGA 823
|||| |||||| ||||| ||||| | | |||||||||||| ||||||||| |||||||||
Sbjct 777 CTTCTTTAGTCCATATTAGTTTAGGGGGAAACCAATTCGAGGGACCTATTGATTTTGGGA 836
Query 824 ATACCA-CTTCGTCATCTA-AG-T-T--G-ACAG-AGTTA-----GAT-GTT-A-G-CT- 865
|||| | |||| ||||||| | | | | | | ||| | || ||| | | ||
Sbjct 837 ATAC-ATCTTCATCATCTAGATCTATATGGAAATTAGTCAATCTCGAACGTTTAAGTCTT 895
Query 866 A-C-AA--CAATCTTG-ATGGGCTAATCCCAAAATCTATATCTACA-TTAGTTAGTCTCG 919
| | || |||| ||| | || | | |||| | ||||||||||| | ||||| | ||| |
Sbjct 896 AGCCAAAACAATTTTGGA-GGACGAGTCCCTAGATCTATATCTA-AGTTAGTCAATCTTG 953
Query 920 AACATTTAGAGCTTAGCCACAACAATTTTAGAGGA-CAAGTCCCTAGTTCTATATCGAAA 978
|| ||||||| ||||||||||||||||| || || | | ||||||| |||||||| ||
Sbjct 954 AATATTTAGATCTTAGCCACAACAATTTC-GAAGAACTATTCCCTAGATCTATATCTAAG 1012
Query 979 TTAGTCAATCTC 990
|||| ||| |||
Sbjct 1013 TTAGCCAACCTC 1024
> Ahg479821 jgi|Araly1|479821|fgenesh2_kg.3__2522__AT3G23110.1
Length=1680
Score = 1173 bits (635), Expect = 0.0
Identities = 807/890 (91%), Gaps = 12/890 (1%)
Strand=Plus/Plus
Query 790 GAAAACCAATTCGAAGGACCTATTAATTTTGGGAATACCACTTCGTCATCTAAGTTGACA 849
|||||||||||||| ||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct 1 GAAAACCAATTCGAGGGACCTATTGATTTTGGGAATACCTCTTCATCATCTAAGTTGACA 60
Query 850 GAGTTAGATGTTAGCTACAACAATCTTGATGGGCTAATCCCAAAATCTATATCTACATTA 909
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 GAGTTAGATGTTAGCTACAACAATCTTGATGGGCTAATCCCAGAATCTATATCTACATTA 120
Query 910 GTTAGTCTCGAACATTTAGAGCTTAGCCACAACAATTTTAGAGGACAAGTCCCTAGTTCT 969
|||||||||||| ||||||| ||||| ||||||||||| ||||||| |||||||||||||
Sbjct 121 GTTAGTCTCGAAAATTTAGATCTTAGTCACAACAATTTCAGAGGACGAGTCCCTAGTTCT 180
Query 970 ATATCGAAATTAGTCAATCTCGATGGTTTATATCTTAGCCATAATAACTTCGGAGGACAA 1029
||||| |||||||||||||||||| |||||||||||||| || || || ||||| |||
Sbjct 181 ATATCAAAATTAGTCAATCTCGATCACTTATATCTTAGCCACAACAATTTAGGAGGGCAA 240
Query 1030 GTCCCTAGCTCTATATTTAAATTA-GTCAATCTCGAA-CATTTAGATCTTAGCCACAACG 1087
|||||||||| ||||| |||||| | ||||||| | | ||||||||||||| | |||
Sbjct 241 GTCCCTAGCTATATATCAAAATTACG-CAATCTCTTATC-TTTAGATCTTAGCTATAACA 298
Query 1088 ATTTCGGAGGACGAGTCCCTAGCTCTATATCAAAATTAGTCAACCTCAGTTCCCTTGATC 1147
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 299 ATTTCGGAGGACGAGTCCCTAGCTCTATATCAAAATTAGTCAACCTCAGTTCCCTTAATC 358
Query 1148 TTTCCTACAACAAGTTTGAAGGTCATGTACCTCAATGTATATGGAGATCTTCTAAGTTAG 1207
|||| ||||||||||| | ||| || |||||||||||||||||||||||||||||||| |
Sbjct 359 TTTCGTACAACAAGTTGGTAGGCCAAGTACCTCAATGTATATGGAGATCTTCTAAGTT-G 417
Query 1208 A-TTCAGTGGATCTTTCTTATAATTCTTTCAACAGTTTCGGCAGAATTCTAGAACTTGGG 1266
| ||| || ||||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct 418 AATTCGGTTGATCTCTCTTATAATTCTTTCAGCAGTTTCGGCATAATTCTAGAACCCACA 477
Query 1267 GATGAATCA-TTAGAAAGAGATTGGGATCTTAGCTCAAATTCCCTCCAAGGACCAATTCC 1325
| || || ||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 478 AAGGAC-CAATTAGAAAGAGACTGGGATCTTAGTTCAAATTCACTCCAAGGACCAATTCC 536
Query 1326 CCAATGGATCTGCAACTTCAGAtttttttCCTTCTTAGATTTTTCCAACAACCATCTTAA 1385
||||||||||||||| |||| || ||||||||||||||||||||||||||||||||| ||
Sbjct 537 CCAATGGATCTGCAATTTCAAATATTTTTCCTTCTTAGATTTTTCCAACAACCATCTCAA 596
Query 1386 TGGCTCAATTCCACAATGTTTGAAGAATTCCACTGATTTCTACATGTTAAATCTGCGAAA 1445
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct 597 TGGCTCAATTCCACAATGTTTGAAGAATTCTACTGATTTCAACATGTTAAATCTTCGAAA 656
Query 1446 CAACAGTCTAAGTGGATTTATGCCAGACTTCTGCATGGATGGCTCA-ATGTTGGGATCAC 1504
||||||||||||||||||||||||||| || ||||| ||||||||| | ||| ||||||
Sbjct 657 CAACAGTCTAAGTGGATTTATGCCAGATTTATGCATCGATGGCTCACAA-TTGCGATCAC 715
Query 1505 TTGATGTCAGCCTCAACAATTTGGTGGGGAAACTTCCAGAATCTTTCATCAACTGTGAGT 1564
|||| ||||||||||||||||||||||||| ||||||| ||||||| |||||||| ||||
Sbjct 716 TTGACGTCAGCCTCAACAATTTGGTGGGGAGACTTCCAAAATCTTTGATCAACTGCGAGT 775
Query 1565 GGATGGAATATCTTAATGTGAGAGGAAACAAGATCAAAGACACGTTTCCAGTCT-GGTTG 1623
||||||| | ||| ||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 776 GGATGGAGTTTCTAAATGTGAGAGGAAACAAGATCAAAGACACGTTTCC-GTTTTGGTTG 834
Query 1624 GGATCTCTACAATACCTAACGGTTCTTGTGCTCCGATCAAATACATTCTA 1673
||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 835 GGATCTCTACAATACCTAAAGGTTCTTGTGCTCCGATCAAATACATTCTA 884
Score = 1037 bits (561), Expect = 0.0
Identities = 712/785 (91%), Gaps = 9/785 (1%)
Strand=Plus/Plus
Query 1720 CGGATCATGGACATATCGAAT-AACAACTTCGTTGGATCATTGCCACAAGACTATTTTGC 1778
||||||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||
Sbjct 885 CGGATCATGGACATATCCAATAAACAACTTCGTTGGATCGTTACCACAAGACTATTTTGT 944
Query 1779 CAACTGGACTGAAATGTCATCGGTATGGCAACGACCTATGCTCACACTTGATTACAAAAG 1838
||| |||||||||||||||| |||||||| ||| ||||||| |||||| |||||||||||
Sbjct 945 CAATTGGACTGAAATGTCATTGGTATGGCGACGGCCTATGCGCACACTCGATTACAAAAG 1004
Query 1839 AAATATAGCTATACCAGGGTCAAACTACATGGGAGAT-G-----ATAATCATCAAGATTC 1892
|||| || |||||||||| |||| ||||||||| ||| | | || |||||||||||
Sbjct 1005 AAATCTAACTATACCAGGATCAAGCTACATGGGGGATGGTTCCAACAAGCATCAAGATTC 1064
Query 1893 AATTGATTTGGTGTATAAAGGAGTAGACACAGATTTCGAACAAATCTTTGGAGGCTTTAA 1952
||||||||||| ||||||||||||||||||||||||| || ||||||| || ||| ||
Sbjct 1065 GATTGATTTGGTATATAAAGGAGTAGACACAGATTTCGTACTAATCTTTCAAGCCTTCAA 1124
Query 1953 AGTCATAGATTTTTCTGGAAACCGATTCTCTGGACATATCCCTAG-ATCCATTGGTCTAT 2011
|| ||| ||||||||||||||||||||||| ||| | || ||| | ||||||||||||||
Sbjct 1125 AGCCATTGATTTTTCTGGAAACCGATTCTCCGGATACATTCCT-GAATCCATTGGTCTAT 1183
Query 2012 TGAGCGAATTGCTTCATCTCAACTTGTCAGGCAATGCATTCACAGGAAACATCCCACCAT 2071
|||||||||||| || ||||||||| |||||||| ||||||| || || |||||||| |
Sbjct 1184 TGAGCGAATTGCGTCTTCTCAACTTATCAGGCAACACATTCACTGGCAATATCCCACCGT 1243
Query 2072 CTTTGGCTAGTATTACAAAGCTCGAGACGCTAGACCTATCGCGAAACAACTTGTCAGGTG 2131
| ||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1244 CATTGGCAAATATTACAAAGCTCGAGACGTTAGACCTATCGCGAAACAACTTGTCAGGTG 1303
Query 2132 AAATTCCTCGAGGTCTCGGGAAACTCTCGTTTCTCTCCAACATCAACTTCTCCCACAACC 2191
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1304 AAATTCCTCGAGGTCTCGGGAAACTCTCGTTTCTCTCCAACATCAACTTCTCCCATAACC 1363
Query 2192 ATCTAGAGGGATTGGTGCCACAAAGCACACAGTTTGGAAGTCAAAATTGTTCTTCATTCA 2251
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1364 ATCTAGAGGGATTGGTGCCACAGAGCACACAGTTTGGAAGTCAAAATTGTTCTTCATTCG 1423
Query 2252 TGGGTAATCCCAGACTCTATGGACTCGATCAAATTTGTGGAGAAACCCATGTCCCCATAC 2311
|||||||||||||||||||||| ||||| |||||||||||||||| |||||||||| |||
Sbjct 1424 TGGGTAATCCCAGACTCTATGGGCTCGAGCAAATTTGTGGAGAAATCCATGTCCCCGTAC 1483
Query 2312 CTACATCGCTGCACCCCGAGGAACCTTTGTTGGAACCGGAAGAGACAGTTCTGAACTGGA 2371
||||||||||||| ||| ||| | |||||||||||||||||||| |||| ||||| ||||
Sbjct 1484 CTACATCGCTGCAGCCCAAGGTAGCTTTGTTGGAACCGGAAGAGCCAGTGCTGAATTGGA 1543
Query 2372 TAGCAGCTGCAATAGCATTTGGACCTGGTGTGTTTTGTGGATTAGTGATTGGACATATTT 2431
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1544 TAGCAGCTGCAATAGCATTTGGACCTGGTGTGTTTTGTGGATTAGTGATCGGACATATTT 1603
Query 2432 TCACTTCATACAAGCACAAGTGGCTTATGGCGAAATTTTGTCGAAACAAGCGCAAAACCA 2491
|||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||||||
Sbjct 1604 TCACTTCATACAAGCACAAGTGGCTTATTACAAAAATTTGTCGAAACAAGCCCAAAACCA 1663
Query 2492 CCATA 2496
|||||
Sbjct 1664 CCATA 1668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94539988090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5