BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23130.1
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479823 jgi|Araly1|479823|fgenesh2_kg.3__2524__AT3G23130.1 1652 0.0
> Ahg479823 jgi|Araly1|479823|fgenesh2_kg.3__2524__AT3G23130.1
Length=1076
Score = 1652 bits (894), Expect = 0.0
Identities = 1020/1079 (95%), Gaps = 16/1079 (1%)
Strand=Plus/Plus
Query 2 tctctctctctctctctAAGAGACAGACAGACATAGATATATCTTAGATTTTTCCCAGGG 61
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 5 TCTCTCTCTCTCTCTCTAAGAGACAGATAGACATAG----ATCTTAGATTTTTCCCAGGG 60
Query 62 GAAAAAAGTGAGTTCATCTTTTCAGATCTTACAAACACTTTGCTTTTATAAACTGATGTA 121
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 GAAAAAAGTGAGTTCATCTTTTCAGATCTTACAAACACTTTGCTTTTGTAAACTGATGTG 120
Query 122 CCACAAATCATTACTAGTACTATCTTAATTATCTTTACAA-tttttttATCTAGCATAGC 180
||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct 121 CCACAAATCATTACTAGTACTATCTTAATTATCTTCACAATTTTTTTTATCTACCATAGC 180
Query 181 CAAAAAGAAAGAGCTTGCACATATGGAGAGATCAAACAGCATAGAGTTGAGGAACAGCTT 240
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CAAAAAGAAAGAGCTTTCACATATGGAGAGATCAAACAACATAGAGTTGAGGAACAGCTT 240
Query 241 CTATGGCCGTGCAAGAACTTCACCATGGAGCTATGGAGATTATGATAATTGCCAACAGGA 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 CTATGGCCGTGCAAGAACTTCACCATGGAGCTATGGAGATTATGATAATTACCAACAGGA 300
Query 301 TCATGATTATCTTCTAGGGTTTTCATGGCCACCAAGATCCTACACTTGCAGCTTCTGCAA 360
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 TCATGAGTATCTTCTAGGGTTTTCATGGCCACCCAGATCCTACACTTGCAGCTTCTGCAA 360
Query 361 AAGGGAATTCAGATCGGCTCAAGCACTTGGTGGCCACATGAATGTTCACAGAAGAGACAG 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 AAGGGAATTCAGATCGGCTCAAGCACTTGGTGGTCACATGAATGTTCACAGAAGAGACAG 420
Query 421 AGCAAGACTCAGATTACAACAGTCTCCATCATCATCTTCAACACCTTCTCCTCCTTACCC 480
||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 421 AGCCAGACTCAGATTACAACAGTCTTCATCATCATCCTCAACACCTTCTCCTCCTTACCC 480
Query 481 TAACCCTAATTACTCTTACTCAACCATGGCAAActctcctcctcctcatcattctcctct 540
||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||
Sbjct 481 TAACCCTAATTACTCTTACTCTTCCATGGCAACCTCTCCTCCTCCTCACCATTCTCCTCT 540
Query 541 aaccctatttccaaccctttctcctccatcctcACCAAGATATAGGGCAGGTTTGATCCG 600
||||||||||||||||||||||||||| || ||||||||||||||| |||||||| ||||
Sbjct 541 AACCCTATTTCCAACCCTTTCTCCTCCGTCATCACCAAGATATAGGCCAGGTTTGGTCCG 600
Query 601 TTCCTTGAGCCCCAAGTCAAAACATACACCAGAAAACGCTTGT-AAGACT-AAGAAATCA 658
||||||||||||||||||||||||||||||||||||||||||| || ||| || |||||
Sbjct 601 TTCCTTGAGCCCCAAGTCAAAACATACACCAGAAAACGCTTGTGAA-ACTGAA-AAATCT 658
Query 659 TCTCTTTTAGTGGAGGCTGGAGAGGCTACAAGGTTCACCAGTAAAGATGCTTGCAAGATC 718
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 659 TCTCTTTTAGTGGAGGCTGGAGAGGCTAAAAGGTTCACCAGTAAAGATGCTTGCAAGATC 718
Query 719 CTGAGGAATGATGAAATCATCAGCTTGGAGCTTGAGATTGGTTTGATTAACGAATCAGAG 778
||||||||||||| ||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct 719 TTGAGGAATGATGATATCATTAGCTTGGAGCTTGAGATTGGTTTGATCAAAGAATCGGAG 778
Query 779 CAAGATCTGGATCTAGAACTCCGTTTGGGTTTCGCTTAATTAGATGGTAATAACTTTATC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 779 CAAGATCTGGATCTAGAACTCCGTTTGGGTTTCGCTTAATTAGATGGTAATAATTTTATC 838
Query 839 CATAAA-GGATTCGAAGTTCACAATTCTAGAAGATATGATGCTTCTCTAAGGTTAATTAG 897
| |||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 839 CTTAAAAGGATTTGAAGTTCACAATTCTAGAAGATATGCCGCTTCTCAAAGGTTAATTAG 898
Query 898 TTTCATCCATATGAAATTCTCTAAGCTTGCTATTTAGTAGAACGTTATAGT-T-G--A-T 952
||||||| |||||||||||||||||||||||| |||||||||||||||| | | | | |
Sbjct 899 TTTCATCGATATGAAATTCTCTAAGCTTGCTAATTAGTAGAACGTTATA-TATAGTCAAT 957
Query 953 TATATGATTATAGTATAAGCTATAAGCTTGCGTTAGATGTTATATAATATGTATGCGCTT 1012
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 958 TATATGATTATAGTATAAGCTATAAGCTTGCGTTAGATGTTATATAATATTTATGCGCTT 1017
Query 1013 GTTACCGTTTTATGTATGACAATGGATACAATTTTGTCTCCTTAATTATTGTTTATCTC 1071
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1018 ACTACCGTTTTATGTATGACAATGGATACAATTTTGTCTCCGTAATAATTGTTTATCTC 1076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39876571182
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5