BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23160.1
Length=2174
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479826 jgi|Araly1|479826|fgenesh2_kg.3__2527__AT3G23160.1 2952 0.0
> Ahg479826 jgi|Araly1|479826|fgenesh2_kg.3__2527__AT3G23160.1
Length=2089
Score = 2952 bits (1598), Expect = 0.0
Identities = 1922/2069 (93%), Gaps = 60/2069 (3%)
Strand=Plus/Plus
Query 129 cttcttcttcACCACTTTTACTTTCTCCTTCTCCAATCCCTCAAAAAGCTCACATCAATG 188
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 58 CTTCTTCTTCACCACTTTTACTTTCTCCTTCTCCAATCCCTC-AAAAGCTCACATCAAT- 115
Query 189 GTACATCTTCTTTTTCAAGTACCGCCCATAATCCCCAATGATTAAACCCTTTTCATTTCT 248
| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 116 G-----------------G-ACCGCCCATAATCCCCAATGATTAAACCCTTTTCATTTCT 157
Query 249 TCATTCCTCGAGAAAGTTAAATGTCATAATCTAAAAACCCTTTTCtttttttCCACGGAT 308
|| ||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 158 TCGTTCCTCGAGAAAGCTAAATGTCTTAATC-AAAAACCCTTTTCTTTTTTTCCACGGAT 216
Query 309 CTGTTCTTAATC-TCCATAAAGACTCAAACTTT-CTTTGAAATTGTTTTCAAAGTTTCGA 366
|||||||||||| |||||||||| ||||||||| | | ||||||| ||||||||||||||
Sbjct 217 CTGTTCTTAATCTTCCATAAAGATTCAAACTTTAC-TCGAAATTG-TTTCAAAGTTTCGA 274
Query 367 TTTTTACAATGGTTTCAGAAGCTTGGATTGTGAAAATGAGAAACCAAGTAAGTTCTAATC 426
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 275 TTTTTACAATGGTTTCAGAAGCTTGGATTGTGAAAATGAGAAACCAAGTAAGTGCTAATC 334
Query 427 TCAAGCACGCTCTTCTTCTTGAATCTTCTTCCACTAAGAAAACCCCTAAACCAG-TC-TC 484
|||| |||||||||||||||||| |||||||||||||||||||||||| || || ||
Sbjct 335 TCAAACACGCTCTTCTTCTTGAA---TCTTCCACTAAGAAAACCCCTAAA--AGCTCTTC 389
Query 485 TCTTCCTAAACAAACAATTGGAATCTTATCTTTCGAAGTAGCTAACGTTATGTCTAAAAC 544
||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |||||
Sbjct 390 TCTTCCTAAACAAACAATTGGGATCTTATCTTTTGAAGTAGCTAACATTATGTCCAAAAC 449
Query 545 CATTCACCTTCACCGTTCTCTGTCCGATACAGAGATCTCTAAGCTTAAAGCCGAGGTTTT 604
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 450 CATTCACCTTCACCGTTCTCTGTCCGATACAGAGATCTCTAAGCTCAAATCCGAGGTTTT 509
Query 605 TCACTCGGAAGGAGTTAGAAAGCTTGTATCTTCCGATGAGAATCATCTT-TTAGATCTCT 663
|| || |||||||||||||| ||||| ||||||||||||||||||||| || ||||||
Sbjct 510 TCGGTCTGAAGGAGTTAGAAATCTTGTTTCTTCCGATGAGAATCATCTTCTT-GATCTCG 568
Query 664 CTGTCTCTGAGAAGCTTGATGATTTGAGCCGTGTAGCTAGTGTTGTGTCTAGGTTAGGTA 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 CTGTCTCTGAGAAGCTTGATGATTTGAGCCGTGTAGCTAGTGTTGTGTCTAGGTTAGGTA 628
Query 724 AGAAATGTAACGAACCTGCTTTACAAGGATTTGAGCATGTTTATGAAGATATAGTGAATG 783
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 AGAAATGTAATGAACCTGCTTTACAAGGATTTGAGCATGTTTATGAAGATATAGTGAATG 688
Query 784 GTGCGATTGATTTTAGGAAGTTAGGGTTCTTGGTTAAAGATATGGAATCTATGGTTAAGA 843
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 GGGTTATTGATTTTAGGAAGTTAGGGTTCTTGGTTAAAGATATGGAATCTATGGTTAAGA 748
Query 844 AGATGGAGAGATTTGTGAATGCTACTTGTAGTTTGTATTGTGAAATGGAAGTGATGAATG 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 AGATGGAGAGATTTGTGAATGCTACTTGTAGTTTGTATTGTGAAATGGAAGTGATGAATG 808
Query 904 AGCTTGAACAAGCTATAGTGAAGCTTCAGAGAAGTCAGCAGCATCAAGAGAGTGTTAAAG 963
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 809 AGCTTGAACAAGCTATAGTGAAGCTTCAGAGAAGTCAGCAACATCAAGAAAGTGTTAAAG 868
Query 964 CTTTTGAACAGAAGCTTATGTGGCAGAGACAGGACGTGAAGAG-TCTTAGAGATGGTTCG 1022
||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||||
Sbjct 869 CTTTTGAACAGAAGCTTATGTGGCAGAGACAAGACTTGA-GAGGTCTTAGAGATGGTTCA 927
Query 1023 TTGTGGAACCAAACTTATGATAAGGTTGTTGAGATGTTGGCTAGGACTGTTTGTACTATT 1082
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 928 TTGTGGAACCAAACTTATGATAAGGTTGTTGAGATGTTGGCTAGAACTGTTTGTACTATT 987
Query 1083 TATGGTAGGATTGAAACTGTTTTTGGTGGGTTGGGTTTGAGAGGGAAAAAGGATGTGACT 1142
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 988 TATGGTAGGATTGAAACTGTTTTTGGTGGTTTGGGTTTGAGAGTGAAAAAGGATGTGACT 1047
Query 1143 TTGAAGAGAGATCGTAGCAAGAATGAAGCGAGTAAGGCTGTTAACTCAAGGTCTGTTGCG 1202
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1048 TTGAAGAGAGATCGTAGCAAGAATGAAGCGAGTAAGGTTGTTAACTCGAGGTCTGTTGCG 1107
Query 1203 GGTTTTAAGGATTCGAGGAGAAGCGAAGCGGATGAGTTTACGCGTGCAGGGGATTTCAAT 1262
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1108 GGTTTTAAGGATTCGAGGAGAAGTGAAGCGGAGGAGTTTACGCGTGCAGGGGATTTTAAT 1167
Query 1263 TTCCCTTGTGGGACTAATCCTGGTAGGATGTTCATGGAATGTCTTGCTATGAATAGGACT 1322
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 TTTCCTTGTGGGACTAATCCTGGTAGGATGTTCATGGAATGTCTTGCTATGAATAGGACT 1227
Query 1323 ATTGGtgatgatgatgatgatgatgatgaAGATGGGGGTCGGATTACATTTCCTTTGAGT 1382
||||||||||||||||||||||| ||||| || |||| |||||||||||||||||
Sbjct 1228 ATTGGTGATGATGATGATGATGAAGATGA---TGC---TCGGGTTACATTTCCTTTGAGT 1281
Query 1383 ACAGCTAGGATGATTCGGAGTAATAAGTTTGGTTTTAAGAGCAGGTTAACTCAACATGCT 1442
|||||| |||||||||||| || |||||||||||| || |||||||||||||||||||||
Sbjct 1282 ACAGCTCGGATGATTCGGACTAGTAAGTTTGGTTTCAAAAGCAGGTTAACTCAACATGCT 1341
Query 1443 TCAGCTTCAACTATTGGAGGATCTGCTTTATCTTTGCACTATGCAAATGTTGTGATTGTG 1502
||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 1342 TCAGCTTCAACGATTGGAGGTTCTGCTTTATCATTGCACTATGCGAATGTTGTGATTGTG 1401
Query 1503 GTAGAAAAGCTTCTTAAGTACCCTCATCTAATAGGCGAAGAAGCAAGAGATGATCTTTAC 1562
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1402 GTAGAGAAGCTTCTCAAGTACCCTCATCTAATAGGCGAAGAAGCAAGAGACGATCTTTAC 1461
Query 1563 CAAATGTTACCAACGAGTTTGAAGACAACGCTTAAGGCTAGTCTAAGATCATACTTGAAG 1622
||||||||||||||||||||||| |||||||| || || | ||| ||||| |||||||||
Sbjct 1462 CAAATGTTACCAACGAGTTTGAAAACAACGCTCAAAGCCAATCTTAGATCGTACTTGAAG 1521
Query 1623 AACATTTCGATCTACGACGCTCCTCTAGCTCACGACTGGAAAGAAACCATAGACGGTATA 1682
||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1522 AACATTTCGATATATGACGCTCCTCTAGCTCACGATTGGAAAGAAACAATAGACGGTATA 1581
Query 1683 CTTTCTTGGCTTGCTCCTTTAGCTCACAACATGATCCGGTGGCAGAGCGAACGCAACTTC 1742
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1582 CTGTCCTGGCTTGCACCTTTAGCTCACAACATGATCCGGTGGCAGAGCGAACGCAACTTC 1641
Query 1743 GAGCAGCAGAATCAGATTGTGAAGCGAACTAACGTTCTTCTACTTCAGACTCTTTACTTT 1802
|||||| | |||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1642 GAGCAGAATAATCAGATCGTGAAGCGAACTAATGTTCTTCTACTTCAGACGCTTTACTTT 1701
Query 1803 GCTGATAGAGAGAAGACAGAAGCTGCGATTTGTAAGCTTCTTGTCGGGTTAAACTACATT 1862
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1702 GCTGATAGAGAGAAGACAGAAGCTGCCATTTGTAAACTTCTTGTCGGGTTAAACTACATT 1761
Query 1863 TGCCATTACGAACAACAACAAAACGCGTTGTTGGATTGCGCGAGTAGCTTTGATTATGAA 1922
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1762 TGCCATTACGAACAGCAACAAAACGCGTTGCTGGATTGCGCGAGTAGCTTTGATTATGAA 1821
Query 1923 GATTGTTTTGAGTGGCAGAGCCAATGCCGTGCAGCTTACTTGGACTAACAATTGG--ttt 1980
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1822 GATTGTTTCGAGTGGCAGAGCCAATGCCGTGCAGCTTACTTGGACTAACAATTGGGGTTT 1881
Query 1981 tttttt-ctt-t--ctttcttcttcttAGTGTTGTTCTATAGATACATTTGTTTATGATT 2036
|||||| ||| | |||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1882 TTTTTTTCTTCTTTCTTTCTTCTTCTTAGTGTTGTTTTATAGATACATTTGTTTATGTTT 1941
Query 2037 CAACACATTGTGAATA-CTAAATATCTAGTTTTGTTTGCATACATAAAAAA--TGATTGT 2093
||||||| |||||||| |||||| |||||||| |||||||||||||||||| |||||||
Sbjct 1942 CAACACAATGTGAATATCTAAATCTCTAGTTTCGTTTGCATACATAAAAAAAATGATTGT 2001
Query 2094 GAAAATTGAAGTTCTGTTGTAGATAACTCCAAATCTT-AGTTAGACAATGTTAAGTGT-- 2150
||||||||||||||| |||| ||| ||||||| |||| ||||| ||||||||||||||
Sbjct 2002 GAAAATTGAAGTTCTATTGTTGATTACTCCAA-TCTTTAGTTAAACAATGTTAAGTGTAT 2060
Query 2151 GT-----ATTGAAGAATATGAGttttttt 2174
|| |||||||||| |||| ||||||
Sbjct 2061 GTGTGTTATTGAAGAATCTGAGCTTTTTT 2089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81817846260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5