BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G23165.1

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg319034 jgi|Araly1|319034|fgenesh1_pm.C_scaffold_3002050           311    2e-84


> Ahg319034 jgi|Araly1|319034|fgenesh1_pm.C_scaffold_3002050
Length=234

 Score =  311 bits (168),  Expect = 2e-84
 Identities = 215/237 (91%), Gaps = 6/237 (3%)
 Strand=Plus/Plus

Query  1    ATGAAGAACTCTTCTATCATGTTCGTACTAATTGTCGTTTTTC-TTATTTCTTCATCAGA  59
            ||||||||||||||| || | |||||||||||||||| ||||| | |||||||| |||||
Sbjct  1    ATGAAGAACTCTTCTCTCCTATTCGTACTAATTGTCG-TTTTCGTCATTTCTTCTTCAGA  59

Query  60   GAACCAAAAAATGGTAGGAGAAGCAAAACAA-TGTAAAACTGGATGGGCTTGTTTTGGAG  118
            |||||||||||||||||||||||||||| || |||||| ||||||||||||||| |||||
Sbjct  60   GAACCAAAAAATGGTAGGAGAAGCAAAA-AAGTGTAAAGCTGGATGGGCTTGTTCTGGAG  118

Query  119  AAGATGCATGCAAAGAAAAATGCATGGCTAAATACAAAGGTGTTGGAACTGTTACTTATT  178
            |||||  |||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct  119  AAGATATATGCAAAGAAAAATGCATGGCTAAATACAATGGTGTTGGCACTGTTACTTATT  178

Query  179  TTCCATTCCCTCCGGAAACTATTATTATATAT-TGCGAATGCTTGTATGATTGCTAA  234
            || | ||||||||||||||||||| ||||| | ||||| ||| ||||||||||||||
Sbjct  179  TTTCTTTCCCTCCGGAAACTATTACTATAT-TGTGCGATTGCGTGTATGATTGCTAA  234



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8057723071


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5