BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23175.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479830 jgi|Araly1|479830|fgenesh2_kg.3__2531__AT3G23175.1 1351 0.0
> Ahg479830 jgi|Araly1|479830|fgenesh2_kg.3__2531__AT3G23175.1
Length=934
Score = 1351 bits (731), Expect = 0.0
Identities = 875/942 (93%), Gaps = 19/942 (2%)
Strand=Plus/Plus
Query 1 GCCGGGTCTGCGTGAATGATGATGGTCTTTGTTTATTACGACCGAAATGACTAAATCAAA 60
||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||
Sbjct 1 GCCGGGTCTGCGTGAATGATGATTGTCTTTGTTTATTACGACTGAAATGACTAACTCAAA 60
Query 61 CTTCTTCTTCTTCAATGGA-TGTTTCTTTTTTATCCATCTCAAGACATATTCTTTCTATT 119
| ||| |||| |||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 61 CCTCTACTTCGTCAATGGATTGTTTCTTTTTTATCCATCTTAAAACATATTCTTTCTATT 120
Query 120 TATTTA---CTTCTTATGCAAC-CAGATTCATCAAAGCTTTAATCATATCACTTTCTTGA 175
|||||| ||||||||| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 121 TATTTACTTCTTCTTATG-AACACAGATTCATCGAAGCTTTAATCATATCACTTTCTTGA 179
Query 176 TCGTTCGTTCATAGTTTGCTTCCGGAACAAAAAACATTGACATTAAGATCACAATATGAA 235
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 180 TCGTTCGTTCATAGTTTGCTTTTGGAACAAAAAACATTGACATTAAGAGCACAATATGAA 239
Query 236 GATGTCAATTAGCAAGGTCAAGAGCATGTTCTGCACAACCTTAACAAAGTCAATGCCAGC 295
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 240 GATGTCAATTAACAAGGTCAAGAGCATGATCTGCACAACCTTAACAAAGTCAATGCCAGC 299
Query 296 CATTGCCTTCTTTGGGAGAATGGCATTTTCCTTTGTCTTTTTCATTACTGCAATCCAAGA 355
|||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 300 CATTGCCTTCTTTGGGAGAATGACATTTTCCTTTGTCTTTCTCATTACTGCTATCCAAGA 359
Query 356 TTATGCTGATCATTATGGCGGTGGAGCTGGCGGGCCACTCGAGAAGACGATGGGACCAGC 415
||||||||||||||||||| || |||||||||| ||||||||||||||||||||||
Sbjct 360 TTATGCTGATCATTATGGC----GA--TGGCGGGCCAATCGAGAAGACGATGGGACCAGC 413
Query 416 CGTGAACATGTTGAGCAAATATGGTTCTAAGGCTCTCACATTTTACTTTGGAATGCAAGT 475
||||||| ||||| |||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 414 CGTGAACGTGTTGTCCAAATATGGTTCAAAGGCACTAACATTTTACTTTGGAATGCAAGT 473
Query 476 GGTCGCATTCGATGTTCGACTTATTGAGTTCGCACTCATAAGTGCAAAGGCAACCGCAGC 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 474 GGTCGCATTCGATGTTCGACTTATTGAGTTCGCACTCATAAGTGCAAAGGCAACCGGAGC 533
Query 536 TTTATGGTTCATCTTTGGACAATCCATCCCAGCTTACTTCTTGCTCGCAACGCAAATATT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 534 TTTATGGTTCATCTTTGGACAATCCATCCCAGCTTACTTCTTGCTCGCAACGCAAATTTT 593
Query 596 CTCAACTGTCATTCCTTTCCCTACCAACTTGAATGACTTCACTCAGAACTTGACGTTAAT 655
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 CTCAACTGTTATTCCTTTCCCTACCAACTTGAATGACTTCACTCAGAACTTGACGTTAAT 653
Query 656 CGGGGCGTTGCTATATTACATTGGATTGAAGCATACTGTCGACAACCTCGATGATGAAGA 715
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
Sbjct 654 CGGGGCGTTGCTATATTACATTGGATTGAAGCATACTATCGACAACCTCGATGAGGAACA 713
Query 716 GAAGAACAAGCAGAC-----C-GAAGGATGATAAGGCCTCAACTTCCAAAGCCAAAGTAA 769
|||||||||| ||| | ||||||||||||||||| ||||||||||||||| | |
Sbjct 714 GAAGAACAAGGAGAATGAGGCAGAAGGATGATAAGGCCTTAACTTCCAAAGCCAATGCCA 773
Query 770 AAGCAAACTGAAAGTGACAACTTCACAAACTCTATTGCTTTATTTCGATGGTTCCCATTA 829
|||||||||| ||||||||| ||||||||| | |||||||||||| ||| ||||||||||
Sbjct 774 AAGCAAACTGCAAGTGACAATTTCACAAACCCCATTGCTTTATTTGGATAGTTCCCATTA 833
Query 830 TGTCttttccttttatttttcttttATCAGACGACTATTTGACCTTATGGTTTAGTAAGT 889
|||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 834 TGTCTTTTCCTTTTATTTGTCTTTAATCAGACAACTATTTGAGCTTATGGTTTAGTAAGT 893
Query 890 GATATCACATTCCATCCAATGTGTTTGTTTGCTGTTATGCTT 931
|||||||| |||||| |||||||||||||||||||||||||
Sbjct 894 AATATCACACTCCATC-AATGTGTTTGTTTGCTGTTATGCTT 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5