BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23180.1
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319038 jgi|Araly1|319038|fgenesh1_pm.C_scaffold_3002054 1037 0.0
> Ahg319038 jgi|Araly1|319038|fgenesh1_pm.C_scaffold_3002054
Length=654
Score = 1037 bits (561), Expect = 0.0
Identities = 626/657 (95%), Gaps = 6/657 (1%)
Strand=Plus/Plus
Query 95 ATGGATGTTGTGCAAAGAAAAGTGaaaaaaaTTGGAAGAAAAGTTGCTTCTTTCCCTCAT 154
|||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct 1 ATGGATGTTGTGCAAAGAAAAGTGAACAAATTTGGAAAAAAAGTTGCTTCTTTCCCTCAT 60
Query 155 GTTGAAACTATTGGAAGAGCTCTCTTTGCCTCCTCCTTCTTCCTCTCTTCTTGGCATGAT 214
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 GTTGAAACTATTGGAAGATCTCTCTTTGCCTCCTCCTTCTTCCTCTCTGCTTGGCATGAT 120
Query 215 TACATGGAGCTCAAAGCCAACTGGAAT-GGAACAGAGGATTATTGGAGCCCAAAGTTTGG 273
|| |||||||||| |||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 121 TATATGGAGCTCAGAGCCAACTGG-ATAGGAACAGAAGATTATTGGAGCCCAAAGTTTGG 179
Query 274 CTATTCAGGAGACCAGATTAAGCATCTTATGACAGTTAGTATCATTGTGAGAACTCTTGG 333
||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 180 CTATTCAGGGGACCAGATTAAGTATCTTATGACAGTTAGTATCATAGTGAGAACTCTTGG 239
Query 334 AGGACTTATCTTCATCTATGGCAGCTTCTTC-GGAGCCTTTCTCTTGCTTATGTACCAAG 392
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 240 AGGACTTATCTTCATCTATGGCAGCTTC-TCTGGAGCCTTTCTCTTGCTTATGTACCAAG 298
Query 393 GCATTGCTACAATGGTTCATCATGATTTCTACAATCATCGTTTAGATACTGAAGAATTTG 452
| |||||||||||| |||||||||||||||||||||||| | | || |||||||||||||
Sbjct 299 GTATTGCTACAATGATTCATCATGATTTCTACAATCATCATATCGACACTGAAGAATTTG 358
Query 453 GACTGCTCTATCTCAAACTCAAAAGGATTCTGAACGAAACAGTGTCGTACAATACTGCAT 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GACTGCTCTATCTCAAACTCAAAAGGATTCTGAACGAAACAGTGTCGTACAATACTGCAT 418
Query 513 ACAATC-TCTACAAATCAGACTTTGACGAGCAGCAGATAGAGCAAGTGAAATCAAAATTC 571
|||| | |||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 419 ACAA-CTTCTACAAATCAGACTTTGACGAGCAGCAAATAGAGCAAGTCAAATCAAAATTC 477
Query 572 CGTGAGCTTGCGGATCACGCGATGACAAACCCTGCATTGTTCGGACATAATGAGTTTCTT 631
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 478 CGTGAGCTTGCGGATCACGCAATGACAAACCCTGCATTGTTCGGACATAATGAGTTTCTT 537
Query 632 CGTCGGCTCTTAAGCTTCGTCAAGGGATTGGCCGTAGTAGGAGCATTGCTGTTTTTCGTG 691
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 538 CGTCGGCTCTTAAGCTTCGTCAAGGGATTGGCCGTAGTAGGAGCATTGCTCTTTTTCTTG 597
Query 692 GATATGAAGTATCGTCTCAACAAAGCCAAGAAGCAATCCAAAGTTAAAAATGATTGA 748
||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 598 GATATGAAGCATCGTCTCAACAAAGCCAAGAACCAATCCAAAGTTAAAACTGATTGA 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27562868991
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5