BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23190.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479832 jgi|Araly1|479832|fgenesh2_kg.3__2533__AT3G23190.1 1445 0.0
> Ahg479832 jgi|Araly1|479832|fgenesh2_kg.3__2533__AT3G23190.1
Length=1048
Score = 1445 bits (782), Expect = 0.0
Identities = 973/1062 (92%), Gaps = 26/1062 (2%)
Strand=Plus/Plus
Query 5 TTCAATTATTCCATCATTTACCATTTAGTCGTCTCCTTGGTGATCCAAATACTTCATCAC 64
||||||||||||||||| |||||| |||||||||||||||||||| || |||| ||||
Sbjct 1 TTCAATTATTCCATCATCTACCATCTAGTCGTCTCCTTGGTGATCTAAGGACTTTATCAT 60
Query 65 CTTCCTTCATAGCAAATTCTCTTCGTCTATCTCATACATTTAAACAAACATAGACATACA 124
|||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| |||||
Sbjct 61 CTTCCTTCGTAGCAAATTCTCTTCGTCTGTCTCATACATTTAAACACACATAGATATACA 120
Query 125 C-TAATCAATCTTCCTTAA-TTTaa-aaaaaaaaCATGGAGAAAACCCAAGAATCAGTGG 181
| |||| |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 121 CTTAAT-AATCTTCCTTAATTTTAAGAAAAAAAACATGGAGAAAACCCAAGAATCGGTGG 179
Query 182 TTAGATATGGAAAAAAGATCGAGAAAATGCCATATCTTATGCCCGCCGGCCGAGTTGTCT 241
|||||||||||| |||||| ||||||||||| | ||||||||| ||||| ||||||||||
Sbjct 180 TTAGATATGGAAGAAAGATAGAGAAAATGCCGTTTCTTATGCCTGCCGGTCGAGTTGTCT 239
Query 242 TTGCATCTGCGTTCCTCGTGTCTGCTTGGAGAGAGTATTATGGTTTCGGATTAGCTGCCG 301
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 240 TTGCAACTGCGTTCATCGTGTCTGCTTGGAGAGAGTATTATGGTTTCGGAGTAGCTGCCG 299
Query 302 ATGAGTTAAGACCAAAACTTGGTTTCTTTGAGAACCAGGCAAAAGC-CATAGTTGCTCTT 360
||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||
Sbjct 300 ATGAGTTAAGACCAAAACTTGGTTTCTTTGAGAACCAGGCAAA-GTACATAGTTTCTCTT 358
Query 361 GGTATATTGATGAAGTTTGTTGGAGGGATCTTATTCATCTTCAATACGTACGTAGGAGCT 420
|||||| ||||||||||| ||||||||||||||||||||||||| || ||| ||||||||
Sbjct 359 GGTATAATGATGAAGTTTATTGGAGGGATCTTATTCATCTTCAACACCTACCTAGGAGCT 418
Query 421 GCGC-TTTTGCTTGTATACCAAGCCATCTTGAGCCCGATATTGTACGATTTCTACAATCG 479
||| |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 419 TCGCCTTTT-CTTGTATACCAAGCCATTTTGAGTCCGATATTGTACGATTTCTACAATCG 477
Query 480 CGATTACGATAGAGACCATTTCACCGTTTTCTACACAAAGTTCAAAGAATTTGTGGAA-G 538
||||| |||||||||||||||||| |||||||||||||||||||||| |||||| || |
Sbjct 478 CGATTTTGATAGAGACCATTTCACCATTTTCTACACAAAGTTCAAAGAGTTTGTG-AACG 536
Query 539 AGACGACGTCAGCTGATGGTGGAGTGGCCATGAGCCTCTATACCTCTGTGGTTAACGAAG 598
||||| |||||| |||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 537 AGACGGTGTCAGCAGATGATGGAGTGGCCATGAGCCTCTATACCTCTATGGTTAACGAAG 596
Query 599 AATCGCGCCAGAAATTCAT-CGATCAGCTTAACGAGATTGCGAGAATCGCCATCTCGAAT 657
||||||||||||||||| | ||||||||||||||||||||| ||| | ||||||||||||
Sbjct 597 AATCGCGCCAGAAATTC-TGCGATCAGCTTAACGAGATTGCAAGACTAGCCATCTCGAAT 655
Query 658 CCTCTATTCACACCAAGCGA-TTTCAACACATTGTTCATAAGGTTTATTAAGGGTGTTGG 716
|||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||
Sbjct 656 CCTCTATTCACACCAAGCGAGTTT-AACACATTGTTCATTAGGTTTATTAAGGGTGTTGG 714
Query 717 AATAGCAGCTGCATTGGCGTGCTTCATTGCGATGAAACATAGGCATGCGGTGCTCATCGA 776
||||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
Sbjct 715 AATAGTAGCTGCATTGGCGTGTTTCATGGCGATGAAACATAGGCATGGGGTGCTCATCAA 774
Query 777 GAAGACGTCCAAGAAGCAAAAAACTAACTGATCC-GATTTGGCTTATTTACTTGTGGATC 835
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||
Sbjct 775 GAAGACGTCCAAGAAGCAAAAAACTAACTGATCCAG-TTTGGCTTATTTACTTGTG--TC 831
Query 836 TCAATCAACAAGTGATCTCTATGTTTTTCAATAATTATTAGTTTCTTTT-AAGATTTGTG 894
|||||||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||||
Sbjct 832 TCAATCAACAAGTGATTTCTTTGTTTTTCAATAATTTTTAGTTTCTTTTGAAGATTTGTG 891
Query 895 AGTTTTG-CTTTTTGCTATGAATAAATAGCAAGTATTTAATTATGATGTTGTACTGTAAT 953
|||||| ||||| |||||||||||||||||||||||| |||||||||||||| | | |
Sbjct 892 AGTTTTTTCTTTTGGCTATGAATAAATAGCAAGTATTTGATTATGATGTTGTA-T-T--T 947
Query 954 TTCATATCC-GAACAAATTTAAATTTCCTTCGGATCATTTGATTAAGCtttttatgtttt 1012
| ||| ||| ||||||||| |||||||||||||||||||||||| || ||||| ||||||
Sbjct 948 T-CATTTCCCGAACAAATTCAAATTTCCTTCGGATCATTTGATTTAGTTTTTTCTGTTTT 1006
Query 1013 atttttctttatatatggtaagcttttttaAAAACTAATTAA 1054
||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1007 TTTTTTCTTTCTATATGGTAAGCTTTTTAAAAAACTAATTAA 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5