BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23200.1
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930344 jgi|Araly1|930344|scaffold_302801.1 758 0.0
Ahg901651 jgi|Araly1|901651|Al_scaffold_0004_2301 329 2e-89
Ahg949648 jgi|Araly1|949648|scaffold_801535.1 274 8e-73
> Ahg930344 jgi|Araly1|930344|scaffold_302801.1
Length=505
Score = 758 bits (410), Expect = 0.0
Identities = 475/506 (94%), Gaps = 5/506 (1%)
Strand=Plus/Plus
Query 275 TTGGGTTTCTTGTGGAAGAGAAATGATAGATATCCCTGGAACACCAGGGACTTTGACTGG 334
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TTGGGTTTGTTGTGGAAGAGAAATGATAGATATCCCTGGAACACCAGGGACTTTGACTGG 63
Query 335 T-TTAGTCTTGAGAATCTCTCAGTGTGTTTTTGCTGCTGGTTCCATTTCTTATATGGTTA 393
| || ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 64 TCTT-GTCTTGAGAATTTCTCAGTGTGTTTTTGCTGCTGGTTCGATTTCGTATATGGTTA 122
Query 394 CTTCTGGTGGCTTCTTTAGCTTCACTGCTTTCTGCTATCTAATAGCAGCAATGGGATTGC 453
|||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 123 CTTCTGGTGGATTCTTCAGCTTCACTGCTTTCTGCTATCTAATTGCAGCAATGGGTTTGC 182
Query 454 AAGTCATATGGAGTTTTGGTCTTGCAATACTAGACACATTCGCATTAGTGAGAAAGAAAA 513
|||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 183 AAGTCATATGGAGTTTCGGTCTTGCGATACTAGACACATTCGCCTTAGTGAGAAAGAAAA 242
Query 514 CGCTTCTTAGTCCAGTTTTAGTCAGCCTCTTTGTAGTTGGAGATTGGGTAACATCGACAT 573
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 243 CGCTTCTTAGTCCGGTTTTAGTCAGCCTATTTGTAGTTGGAGATTGGGTAACATCGACAT 302
Query 574 TGTCACTAGCGGGAGCATCGTCTTCCGCGGGAATAACGGTTTTATACTTTGGAGATTTAG 633
|||||||||| ||||| || || ||||||||||||||||||||||||||||| |||||||
Sbjct 303 TGTCACTAGCAGGAGCTTCATCATCCGCGGGAATAACGGTTTTATACTTTGGCGATTTAG 362
Query 634 GAAGCTGCAGTTTCGAAGCAGAGTGTTGGAAGTACCAACTCTCTGTAGCTTTAGCCTTCC 693
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 363 GAAGCTGCAGTTTCGAAGCAGAGTGTTGGAAATACCAACTCTCTGTAGCTTTAGCTTTCC 422
Query 694 TTTGTTGGATCACTATCGCCGTTTCTTCACTTACTACACTTTGGTTACTTGCTTCAGCGT 753
||||||||||||| |||||| |||| |||||||| ||||| |||||||||||||| ||||
Sbjct 423 TTTGTTGGATCACCATCGCCATTTCCTCACTTACCACACTCTGGTTACTTGCTTCCGCGT 482
Query 754 AAGTAAAAACCGAAAAAACTCTTCTG 779
|||||||| |||||||| |||| |||
Sbjct 483 AAGTAAAA-CCGAAAAA-CTCT-CTG 505
> Ahg901651 jgi|Araly1|901651|Al_scaffold_0004_2301
Length=363
Score = 329 bits (178), Expect = 2e-89
Identities = 297/350 (85%), Gaps = 25/350 (7%)
Strand=Plus/Plus
Query 387 ATGGTTACTTCTGGTGGCTTCTTTAGCTTCACTGCTTTCTGCTATCTAATAGCAGCAATG 446
|||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTACTTCTAGTGGATTCTTCAGCTTCACTGCTTTCTGCTATCTAATAGCAGCAATG 60
Query 447 GGATTGCAAGTCATATGGAGTTTTGGTCTTGCAATACTAGACACATTCGCATTAGTGAGA 506
|| |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 61 GGTTTGCAAGTCATATGGAGTTTCGGTCTTGCTATACTAGACACATTCGCCTTAGTGAGA 120
Query 507 AAGAAAACGCTTCTTAGTCCAGTTTTAGTCAGCCTCTTTGTAGTTGGAGATTGGGTAACA 566
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
Sbjct 121 AAGAAAACGCTTCTTAGTCCGGTTTTAGTCAGCCTATTTGTAGTTGGAGATTGGGTAAGA 180
Query 567 -TCGACATTGTCACTAG-CGGGAGCATCGTC-TTC-C----GC-GG-G-A--AT-AACG- 611
| ||| | || || | | | | ||||| | || | || || | | || ||
Sbjct 181 GTAGACCCTCTCTCT-GTCTGTAACATCGACATTGTCATTAGCAGGAGCATCATCAAAAT 239
Query 612 G-T--T--TTAT--ACTTTGGAGATTTAGGAAGCTGCAGTTTCGAAGCAGAGTGTTGGAA 664
| | | || | | ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 240 GCTAATCATTTTGTATTTTGGCGATTTAGGAAGCTGCAGTTTTGAAGCAGAGTGTTGGAA 299
Query 665 GTACCAACTCTCTGTAGCTTTAGCCTTCCTTTGTTGGATCACTA-TCGCC 713
||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 300 ATACCAACTCTCTGTAGCTTTAGCTTTCCTTTGTTGGATCAC-AGTCGCC 348
> Ahg949648 jgi|Araly1|949648|scaffold_801535.1
Length=355
Score = 274 bits (148), Expect = 8e-73
Identities = 164/172 (95%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 367 CTGCTGGTTCCATTTCTTATATGGTTACTTCTGGTGGCTTCTTTAGCTTCACTGCTTTCT 426
|||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1 CTGCTGGTTCGATTTCTTATATGGTTACTTCTGGTGGATTCTTCAGCTTCACTGCTTTCT 60
Query 427 GCTATCTAATAGCAGCAATGGGATTGCAAGTCATATGGAGTTTTGGTCTTGCAATACTAG 486
|||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 61 GCTATCTAATAGCAGCAATGGGTTTGCAAGTCATATGGAGTTTCGGTCTTGCTATACTAG 120
Query 487 ACACATTCGCATTAGTGAGAAAGAAAACGCTTCTTAGTCCAGTTTTAGTCAG 538
|||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 ACACATTCGCCTTAGTGAGAAAGAAAACGCTTCTTAGTCCGGTTTTAGTCAG 172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34501239885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5