BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23210.1
Length=1294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479835 jgi|Araly1|479835|fgenesh2_kg.3__2536__AT3G23210.1 1500 0.0
Ahg930345 jgi|Araly1|930345|scaffold_302802.1 305 4e-82
> Ahg479835 jgi|Araly1|479835|fgenesh2_kg.3__2536__AT3G23210.1
Length=1190
Score = 1500 bits (812), Expect = 0.0
Identities = 1019/1118 (91%), Gaps = 17/1118 (2%)
Strand=Plus/Plus
Query 154 TGTTCTTCTTCTGATGTATCCATCAATCGAAGACGATGATGATCTTCTCGCTGCTCTTTG 213
|||| ||||||||||||||| |||||| || |||||||||||||||||||||||||||||
Sbjct 85 TGTTATTCTTCTGATGTATCAATCAATTGACGACGATGATGATCTTCTCGCTGCTCTTTG 144
Query 214 TTTTGATCAAAGCAATGGAGTAGAAGATCCTTATGGATATATGCAAACAAATGAAGATAA 273
||||||||||||||||||||||| ||||||||||| |||||| || |||||||| |||||
Sbjct 145 TTTTGATCAAAGCAATGGAGTAGTAGATCCTTATGCATATATTCAGACAAATGAGGATAA 204
Query 274 CATATTTCAGGATTTTGGGTCTTGTGGTGTGAATCTGATGCAGCCACAACAAGAACAATT 333
||| ||||||||||||||||| |||||| ||||||| | ||| |||||||| |||||||
Sbjct 205 CATCTTTCAGGATTTTGGGTCCTGTGGTTTGAATCT-A--CAGTCACAACAACAACAATT 261
Query 334 TGATTCTTTTAATGGAAATCTTGAGCAAGTTTGTAGTAGCTTTAGAGGAGG-AAACAATG 392
||||||||||| |||||||||||| |||| || | ||||||||||||| || ||||||||
Sbjct 262 TGATTCTTTTAGTGGAAATCTTGAACAAG-TT-T-GTAGCTTTAGAGG-GGAAAACAATG 317
Query 393 GAGTTGTTTATAGTAGTAGCATTGGATCAGCACAATTGGATTTGGCTGCATCGTTTAGTG 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GAGTTGTTTATAGTAGTAGCATTGGATCAGCACAATTGGATTTGGCTGCATCGTTTAGTG 377
Query 453 GAGTTTTGCAGCAAGAGACACATCAAGTCTGTGGCTTTAGAGGACAAAACGACGATTCTG 512
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 378 GAGTTTTGCAGCAAGAGACTCATCAAGTTTGTGGCTTTAGAGGACAAAACGACGATTCTG 437
Query 513 CAGTGCCTCATTTGCAGCAGCAACAAGGACAGGTGTTTAGTGGTGTAGTGGAAATCAATT 572
||| | ||||||| ||||| |||||||||| |||| ||| |||||||||||||||||||
Sbjct 438 CAGCGAATCATTTGGAGCAGGAACAAGGACAAGTGTGTAGCGGTGTAGTGGAAATCAATT 497
Query 573 CTTCGTCATCTGTTGGAGCTGTTAAGGAAGAGTTTGAGGAAGAATGT-TCGGGGAAGAGG 631
||||||| || ||||||| ||||||||| ||||| || | | || | || || |||
Sbjct 498 CTTCGTCGTCGGTTGGAGGTGTTAAGGATGAGTTAGAACATGGAT-TATCTATTAACAGG 556
Query 632 AGACGAACTGGATCATGTAGCAAGCCAGGAACCAAAGCCTGTCGCGAGAAACTAAGAAGG 691
|||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 557 GGACGAAATGGATCATGTAACAAGCCAGGAACCAAAGCCTGTCGTGAGAAACTAAGAAGG 616
Query 692 GAAAAGCTAAATGACAAGTTCATGGACTTGAGCTCTGTTTTAGAGCCTGGCAGGACTCCA 751
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 617 GAAAAGCTAAATGACAAGTTCATGGACTTGAGCTCTGTTTTGGAGCCTGGCAGGAATCCA 676
Query 752 AAGACGGATAAATCAGCTATACTCGACGATGCAATCCGGGTTGTGAATCAGCTTAGAGGT 811
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 677 AAGACGGATAAATCAGCTATACTCGATGATGCAATCCGGGTTGTGAATCAGCTCAGAGGT 736
Query 812 GAAGCTCATGAGCTTCAAGAAACCAACCAAAAGCTTCTAGAAGAGATCAAGAGTCTAAAG 871
||||||||||||||| ||||||||||||| |||||||| ||||||||||||| |||||||
Sbjct 737 GAAGCTCATGAGCTTAAAGAAACCAACCAGAAGCTTCTGGAAGAGATCAAGAATCTAAAG 796
Query 872 GCGGATAAAAACGAGCTACGAGAGGAAAAGCTGGTGTTGAAGGCGGAGAAGGAGAAGATG 931
||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 797 GCGGAGAAAAACGAGTTACGGGAGGAAAAGCTGGTGTTGAAGGCGGATAAGGAGAAGATG 856
Query 932 GAGCAACAGTTAAAATCTATGGTGGTTCCATCACCAGGTTTCATGCCCTCCCAGCATCCA 991
||||||||||| |||||||||| | |||||||||| |||||||||||||| |||||||||
Sbjct 857 GAGCAACAGTTGAAATCTATGGCGTTTCCATCACCGGGTTTCATGCCCTCACAGCATCCA 916
Query 992 GCAGCTTTCCATTCCC-ATAAGATGGCGGTGGCTTAC-CCTTACGGCTACTATCCTCCAA 1049
||||||||||| |||| |||| ||| |||| || | |||| | |||||||||||||
Sbjct 917 GCAGCTTTCCA-TCCCAATAATATGTCGGTTTATT-CGGGTTACAGTTACTATCCTCCAA 974
Query 1050 ACATGCCAATGTGGTCACCCTTACCTCCTGCTGACCGTGATACGTCTCGTGATCTCAAAA 1109
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 975 ACATGCCAATGTGGTCACCCTTACCTCCTGCTGACCGTGATACGTCTCGTGATCACAAAA 1034
Query 1110 ATCTTCCTCCTGTTGCTTAATCTTCTT-CATGTTGATTCATCATTGATCATTGTTATCAA 1168
|||||||||||||||||||||| ||| | |||||||| |||| ||||||| ||||||
Sbjct 1035 ATCTTCCTCCTGTTGCTTAATCAGCTTTC-TGTTGATTAATCAATGATCATAACTATCAA 1093
Query 1169 TCCCTTAGGAATTTTTGTTCCTTCAGATGATTCTTTAATCAGTAGTTTTGCAGTAACCAT 1228
|| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1094 TCGCTTAGGAATTTTTGTTCCTTCAGATGATTCTTTA-TCAGTAGTTTTACAGTAACCAT 1152
Query 1229 TTGGAGATTAGAGAATTTTATGATTTGAATAAAATGTC 1266
| ||||||||||||||||| ||||||||||||||||||
Sbjct 1153 TGGGAGATTAGAGAATTTTTTGATTTGAATAAAATGTC 1190
> Ahg930345 jgi|Araly1|930345|scaffold_302802.1
Length=670
Score = 305 bits (165), Expect = 4e-82
Identities = 228/258 (88%), Gaps = 5/258 (2%)
Strand=Plus/Plus
Query 870 AGGCGGATAAAAACGAGCTACGAGAGGAAAAGCTGGTGTTGAAGGCGGAGAAGGAGAAGA 929
||||||| |||||||| || | |||||||||||||||||||||||||| |||||||||
Sbjct 415 AGGCGGAGAAAAACGAATTATGGGAGGAAAAGCTGGTGTTGAAGGCGGATAAGGAGAAGG 474
Query 930 TGGAGCAACAGTTAAAATCTATGGTGGTTCCATCACCAGGTTTCATGCCCTCCCAGCATC 989
||| ||||||||| |||||||||| | |||||||||| |||||||| ||||| |||||||
Sbjct 475 TGGTGCAACAGTTGAAATCTATGGCGTTTCCATCACCGGGTTTCATCCCCTCGCAGCATC 534
Query 990 CAGCAGCTTTCCATTCCC-ATAAGATGGCGGTGGCTTAC-CCTTACGGCTACTATCCTCC 1047
||||||||||||| |||| |||| ||| |||| || | |||| | |||||||||||
Sbjct 535 CAGCAGCTTTCCA-TCCCAATAATATGTCGGTTTATT-CGGGTTACAGTTACTATCCTCC 592
Query 1048 AAACATGCCAATGTGGTCACCCTTACCTCCTGCTGACCGTGATACG-TCTCGTGATCTCA 1106
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 593 AAACATGGCAATGTGGTCACCCTTACCTCCTGCTGACCGTGATACGGTCTCGTGATCACA 652
Query 1107 AAAATCTTCCTCCTGTTG 1124
||||||||||||||||||
Sbjct 653 AAAATCTTCCTCCTGTTG 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48377981673
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5