BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G23220.1

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479836 jgi|Araly1|479836|fgenesh2_kg.3__2537__AT3G23220.1         549    6e-156


> Ahg479836 jgi|Araly1|479836|fgenesh2_kg.3__2537__AT3G23220.1
Length=384

 Score =  549 bits (297),  Expect = 6e-156
 Identities = 359/388 (93%), Gaps = 7/388 (2%)
 Strand=Plus/Plus

Query  54   TGAAATACAGAGGCGTACGAAAGCGTCCATGGGGAAAATATGCGGCGGAGATTCGCGACT  113
            |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct  2    TGAAATACAGAGGCGTACGAAAGCGTCCATGGGGGAAATATGCGGCGGAGATACGCGACT  61

Query  114  CAGCTAGACACGGTGCTCGTGTTTGGCTTGGGACGTTTAACACAGCGGAAGACGCGGCTC  173
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  62   CAGCTAGACACGGTGCTCGTGTTTGGCTTGGGACGTTTGACACAGCGGAAGACGCGGCTC  121

Query  174  GGGCTTATGATAGAGCAGCTTTCGGCATGAGAGGCCAAAGGGCCATTCTCAATTTTCCTC  233
            |||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||
Sbjct  122  GGGCTTATGATAGAGCAGCTTTTGCCATGAGAGGCCAAAGGGCCATTCTCAATTTCCCTC  181

Query  234  ACGAGTATCAAATGATGAAGGACGGTCCAAATGGCAGCC-ACGAGAATGCAGTGGCTTCC  292
            ||||||||||||||||||||||||||||||||||||||| | |||||||  |||||||||
Sbjct  182  ACGAGTATCAAATGATGAAGGACGGTCCAAATGGCAGCCGA-GAGAATGTGGTGGCTTCC  240

Query  293  TCGTCGTCGGGATATAGAGGAGGAGGTGGTGGTGATGATGGGAGGGAAGTTATTGAGTTC  352
            |||||||| | ||||||||||||||||||||||||    || ||| |||| |||||||| 
Sbjct  241  TCGTCGTCTGAATATAGAGGAGGAGGTGGTGGTGACC--GGAAGG-AAGTGATTGAGTTT  297

Query  353  GAGTATTTGGATGATAGTTTATTGGAGGAGCTTTTAGATTATGGTGAGAGA-TCTAACCA  411
            |||||||| || |||||||||||||||||||||||||||||||| |||| | | ||||||
Sbjct  298  GAGTATTTAGACGATAGTTTATTGGAGGAGCTTTTAGATTATGGAGAGA-ACTATAACCA  356

Query  412  AGACAATTGTAACGACGCAAACCGCTAG  439
            ||||| ||| |||||||||||||| |||
Sbjct  357  AGACACTTGGAACGACGCAAACCGTTAG  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15834569435


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5