BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G23230.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value Ahg479837 jgi|Araly1|479837|fgenesh2_kg.3__2538__AT3G23230.1 630 2e-180 Ahg497440 jgi|Araly1|497440|fgenesh2_kg.471__1__AT3G23230.1 625 9e-179 > Ahg479837 jgi|Araly1|479837|fgenesh2_kg.3__2538__AT3G23230.1 Length=421 Score = 630 bits (341), Expect = 2e-180 Identities = 396/422 (94%), Gaps = 5/422 (1%) Strand=Plus/Plus Query 1 ATGGAGAGCTCAAACAGGAGCAGCAACAACCAATCACAAGATGACAAGCAAGCTCGTTTC 60 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGAGCTCAAACAGGAGGAGCAACAACCAATCACAAGATGACAAGCAAGCTCGTTTC 60 Query 61 CGGGGAGTTCGAAGAAGGCCTTGGGG-AAAGTTTGCAGCAGAGATTCGAGACCCGTCGAG 119 || || |||||||| || || ||||| ||| ||||||||||||||||||||||||||||| Sbjct 61 CGAGGCGTTCGAAGGAGACCATGGGGCAAA-TTTGCAGCAGAGATTCGAGACCCGTCGAG 119 Query 120 AAACGGTGCCCGTCTTTGGCTCGGGACATTTGAGACCGCTGAGGAGGCAGCAAGGGCTTA 179 |||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| Sbjct 120 GAACGGTGCCCGTCTTTGGCTAGGGACATTTGAGACCGCTGAGGAGGCGGCACGGGCTTA 179 Query 180 TGACCGAGCAGCCTTTAACCTTAGGGGTCATCTCGCTATACTCAACTTCCCTAATGAGTA 239 |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 180 TGACCGAGCAGCCTATAACCTTAGGGGCCATCTCGCTATACTCAACTTCCCTAATGAGTA 239 Query 240 TTATCCACGTATGGACGACTACTCGCTTCGCCCTCCTTA---TGCTTCTTCTTCTTCGTC 296 |||| |||||||||||||||||||||||||||||||||| | ||||||||||||| || Sbjct 240 TTATTCACGTATGGACGACTACTCGCTTCGCCCTCCTTACGCTTCTTCTTCTTCTTCTTC 299 Query 297 GTCGTCATCGGGTTCAACTTCTACTAATGTGAGTCGACAAAACCAAAGAGAAGTTTTCGA 356 |||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||| Sbjct 300 TTCGTCATCGGGTTCTACTTCTACCAATGCGAGTCGACAAAACCAAAGAGAAGTTTTCGA 359 Query 357 GTTTGAGTATTTGGACGATAAGGTTCTTGAAGAACTTCTTGATTCAGAAGAAAGGAAGAG 416 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 360 GTTTGAGTATTTGGACGATAGGGTTCTCGAAGAACTTCTTGATTCAGAAGAAAGGAAGAG 419 Query 417 AT 418 || Sbjct 420 AT 421 > Ahg497440 jgi|Araly1|497440|fgenesh2_kg.471__1__AT3G23230.1 Length=421 Score = 625 bits (338), Expect = 9e-179 Identities = 395/422 (94%), Gaps = 5/422 (1%) Strand=Plus/Plus Query 1 ATGGAGAGCTCAAACAGGAGCAGCAACAACCAATCACAAGATGACAAGCAAGCTCGTTTC 60 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGAGCTCAAACAGGAGGAGCAACAACCAATCACAAGATGACAAGCAAGCTCGTTTC 60 Query 61 CGGGGAGTTCGAAGAAGGCCTTGGGG-AAAGTTTGCAGCAGAGATTCGAGACCCGTCGAG 119 || || |||||||| || || ||||| ||| ||||||||||||||||||||||||||||| Sbjct 61 CGAGGCGTTCGAAGGAGACCATGGGGCAAA-TTTGCAGCAGAGATTCGAGACCCGTCGAG 119 Query 120 AAACGGTGCCCGTCTTTGGCTCGGGACATTTGAGACCGCTGAGGAGGCAGCAAGGGCTTA 179 |||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| Sbjct 120 GAACGGTGCCCGTCTTTGGCTAGGGACATTTGAGACCGCTGAGGAGGCGGCACGGGCTTA 179 Query 180 TGACCGAGCAGCCTTTAACCTTAGGGGTCATCTCGCTATACTCAACTTCCCTAATGAGTA 239 |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 180 TGACCGAGCAGCCTATAACCTTAGGGGCCATCTCGCTATACTTAACTTCCCTAATGAGTA 239 Query 240 TTATCCACGTATGGACGACTACTCGCTTCGCCCTCCTTA---TGCTTCTTCTTCTTCGTC 296 |||| |||||||||||||||||||||||||||||||||| | ||||||||||||| || Sbjct 240 TTATTCACGTATGGACGACTACTCGCTTCGCCCTCCTTACGCTTCTTCTTCTTCTTCTTC 299 Query 297 GTCGTCATCGGGTTCAACTTCTACTAATGTGAGTCGACAAAACCAAAGAGAAGTTTTCGA 356 |||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||| Sbjct 300 TTCGTCATCGGGTTCTACTTCTACCAATGCGAGTCGACAAAACCAAAGAGAAGTTTTCGA 359 Query 357 GTTTGAGTATTTGGACGATAAGGTTCTTGAAGAACTTCTTGATTCAGAAGAAAGGAAGAG 416 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 360 GTTTGAGTATTTGGACGATAGGGTTCTCGAAGAACTTCTTGATTCAGAAGAAAGGAAGAG 419 Query 417 AT 418 || Sbjct 420 AT 421 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15109613244 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5