BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23230.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479837 jgi|Araly1|479837|fgenesh2_kg.3__2538__AT3G23230.1 630 2e-180
Ahg497440 jgi|Araly1|497440|fgenesh2_kg.471__1__AT3G23230.1 625 9e-179
> Ahg479837 jgi|Araly1|479837|fgenesh2_kg.3__2538__AT3G23230.1
Length=421
Score = 630 bits (341), Expect = 2e-180
Identities = 396/422 (94%), Gaps = 5/422 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAGCTCAAACAGGAGCAGCAACAACCAATCACAAGATGACAAGCAAGCTCGTTTC 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAGCTCAAACAGGAGGAGCAACAACCAATCACAAGATGACAAGCAAGCTCGTTTC 60
Query 61 CGGGGAGTTCGAAGAAGGCCTTGGGG-AAAGTTTGCAGCAGAGATTCGAGACCCGTCGAG 119
|| || |||||||| || || ||||| ||| |||||||||||||||||||||||||||||
Sbjct 61 CGAGGCGTTCGAAGGAGACCATGGGGCAAA-TTTGCAGCAGAGATTCGAGACCCGTCGAG 119
Query 120 AAACGGTGCCCGTCTTTGGCTCGGGACATTTGAGACCGCTGAGGAGGCAGCAAGGGCTTA 179
|||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||
Sbjct 120 GAACGGTGCCCGTCTTTGGCTAGGGACATTTGAGACCGCTGAGGAGGCGGCACGGGCTTA 179
Query 180 TGACCGAGCAGCCTTTAACCTTAGGGGTCATCTCGCTATACTCAACTTCCCTAATGAGTA 239
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 TGACCGAGCAGCCTATAACCTTAGGGGCCATCTCGCTATACTCAACTTCCCTAATGAGTA 239
Query 240 TTATCCACGTATGGACGACTACTCGCTTCGCCCTCCTTA---TGCTTCTTCTTCTTCGTC 296
|||| |||||||||||||||||||||||||||||||||| | ||||||||||||| ||
Sbjct 240 TTATTCACGTATGGACGACTACTCGCTTCGCCCTCCTTACGCTTCTTCTTCTTCTTCTTC 299
Query 297 GTCGTCATCGGGTTCAACTTCTACTAATGTGAGTCGACAAAACCAAAGAGAAGTTTTCGA 356
|||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 300 TTCGTCATCGGGTTCTACTTCTACCAATGCGAGTCGACAAAACCAAAGAGAAGTTTTCGA 359
Query 357 GTTTGAGTATTTGGACGATAAGGTTCTTGAAGAACTTCTTGATTCAGAAGAAAGGAAGAG 416
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 360 GTTTGAGTATTTGGACGATAGGGTTCTCGAAGAACTTCTTGATTCAGAAGAAAGGAAGAG 419
Query 417 AT 418
||
Sbjct 420 AT 421
> Ahg497440 jgi|Araly1|497440|fgenesh2_kg.471__1__AT3G23230.1
Length=421
Score = 625 bits (338), Expect = 9e-179
Identities = 395/422 (94%), Gaps = 5/422 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAGCTCAAACAGGAGCAGCAACAACCAATCACAAGATGACAAGCAAGCTCGTTTC 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAGCTCAAACAGGAGGAGCAACAACCAATCACAAGATGACAAGCAAGCTCGTTTC 60
Query 61 CGGGGAGTTCGAAGAAGGCCTTGGGG-AAAGTTTGCAGCAGAGATTCGAGACCCGTCGAG 119
|| || |||||||| || || ||||| ||| |||||||||||||||||||||||||||||
Sbjct 61 CGAGGCGTTCGAAGGAGACCATGGGGCAAA-TTTGCAGCAGAGATTCGAGACCCGTCGAG 119
Query 120 AAACGGTGCCCGTCTTTGGCTCGGGACATTTGAGACCGCTGAGGAGGCAGCAAGGGCTTA 179
|||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||
Sbjct 120 GAACGGTGCCCGTCTTTGGCTAGGGACATTTGAGACCGCTGAGGAGGCGGCACGGGCTTA 179
Query 180 TGACCGAGCAGCCTTTAACCTTAGGGGTCATCTCGCTATACTCAACTTCCCTAATGAGTA 239
|||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 180 TGACCGAGCAGCCTATAACCTTAGGGGCCATCTCGCTATACTTAACTTCCCTAATGAGTA 239
Query 240 TTATCCACGTATGGACGACTACTCGCTTCGCCCTCCTTA---TGCTTCTTCTTCTTCGTC 296
|||| |||||||||||||||||||||||||||||||||| | ||||||||||||| ||
Sbjct 240 TTATTCACGTATGGACGACTACTCGCTTCGCCCTCCTTACGCTTCTTCTTCTTCTTCTTC 299
Query 297 GTCGTCATCGGGTTCAACTTCTACTAATGTGAGTCGACAAAACCAAAGAGAAGTTTTCGA 356
|||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 300 TTCGTCATCGGGTTCTACTTCTACCAATGCGAGTCGACAAAACCAAAGAGAAGTTTTCGA 359
Query 357 GTTTGAGTATTTGGACGATAAGGTTCTTGAAGAACTTCTTGATTCAGAAGAAAGGAAGAG 416
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 360 GTTTGAGTATTTGGACGATAGGGTTCTCGAAGAACTTCTTGATTCAGAAGAAAGGAAGAG 419
Query 417 AT 418
||
Sbjct 420 AT 421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15109613244
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5