BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23240.1
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930349 jgi|Araly1|930349|scaffold_302806.1 1000 0.0
> Ahg930349 jgi|Araly1|930349|scaffold_302806.1
Length=697
Score = 1000 bits (541), Expect = 0.0
Identities = 635/681 (93%), Gaps = 4/681 (1%)
Strand=Plus/Plus
Query 55 TTTCTACATGGATCCAT-TTTTAATTCAGTCCCCATTCTCCGGCTTCTCACCGGAATATT 113
||||||||||||||||| |||| ||||||| || || || ||||||| ||||||||||
Sbjct 14 TTTCTACATGGATCCATCTTTT-CTTCAGTCACCGTTATCTAGCTTCTCGCCGGAATATT 72
Query 114 CTATCGGATCTTCTCCAGATTCTTTCTCATCCTCTTCTTCTAACAATTACTCTCTTCCCT 173
||| |||||||||||| || |||||||| |||||||||||||| || |||||||||||||
Sbjct 73 CTACCGGATCTTCTCCGGAATCTTTCTCTTCCTCTTCTTCTAATAACTACTCTCTTCCCT 132
Query 174 TCAACGAGAACGACTCAGAGGAAATGTTTCTCTACGGTCTAATCGAGCAGTCCACGCAAC 233
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 133 TCAACGAGAACGACTCAGAGGAAATGTTTCTCTACGGTCTAATCGAGCAATCCACGCAAC 192
Query 234 -AAACCTATATTGACTCGGATAGTCAAGACCTTCCGATCAAATCCGTAAGCTCAAGAAAG 292
|||| | || || ||| || ||||||||||||| ||||||||||||||||||||||
Sbjct 193 GAAACTTC-ATCGAATCGAATCTTCAAGACCTTCCGGTCAAATCCGTAAGCTCAAGAAAC 251
Query 293 TCAGAGAAGTCTTACAGAGGCGTAAGACGACGGCCATGGGGGAAATTCGCGGCGGAGATA 352
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 252 TCAGAGAAGTCGTACAGAGGTGTAAGACGACGGCCATGGGGGAAATTCGCGGCGGAGATA 311
Query 353 AGAGATTCGACTAGAAACGGTATTAGGGTTTGGCTCGGGACGTTCGAAAGCGCGGAAGAG 412
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 312 AGAGATTCGACTCGAAACGGTATTCGGGTTTGGCTCGGGACGTTCGAAAGCGCGGAAGAG 371
Query 413 GCGGCTTTAGCCTACGATCAAGCTGCTTTCTCGATGAGAGGGTCCTCGGCGATTCTCAAT 472
|||||| | |||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 372 GCGGCTCTCGCCTACGATCAAGCCGCTTTCTCGATGAGAGGTTCTTCGGCGATTCTCAAT 431
Query 473 TTTTCGGCGGAGAGAGTTCAAGAGTCGCTTTCGGAGATTAAATATACCTACGAGGATGGT 532
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 432 TTTTCGCCGGAGAGAGTTCAAGAGTCGCTTTCGGAGATTAAGTATACCTACGAGGATGGT 491
Query 533 TGTTCTCCGGTTGTGGCGTTGAAGAGGAAACACTCGATGAGACGGAGAATGACCAATAAG 592
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 492 TGTTCTCCGGTTGTGGCTTTGAAGAGGAAACACTCGATGAGACGAAGAATGACCAATAAG 551
Query 593 AAGACGAAAGATAGTGACTTTGATCACCGCTCCGTGAAGTTAGATAATGTAGTTGTCTTT 652
||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 552 AAGACGAAAGACAGTGACTTTGTTCACCGCTCCGTGAAGTTAGATAATGTTGTTGTCTTT 611
Query 653 GAGGATTTGGGAGAACAGTACCTTGAGGAGCTTTTGGGGTCTTCTGAAAATAGTGGGACT 712
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 612 GAGGATTTGGGAGAACAGTACCTTGAAGAGCTTTTGGGTTCGTCTGAAAATAGTGGGACT 671
Query 713 TGGTGAAAGATTAGGATTTGT 733
|||||||||||||||||||||
Sbjct 672 TGGTGAAAGATTAGGATTTGT 692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35683050312
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5