BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23250.1
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479838 jgi|Araly1|479838|fgenesh2_kg.3__2539__AT3G23250.1 1459 0.0
> Ahg479838 jgi|Araly1|479838|fgenesh2_kg.3__2539__AT3G23250.1
Length=1267
Score = 1459 bits (790), Expect = 0.0
Identities = 971/1053 (92%), Gaps = 34/1053 (3%)
Strand=Plus/Plus
Query 273 AAATCAAAGAGATGGGAAGAGCTCCATGCTGTGAGAAGATGGGGTTGAAGAGAGGACCAT 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 AAATCAAAGAGATGGGAAGAGCTCCATGCTGTGAGAAGATGGGGTTGAAGAGAGGACCAT 304
Query 333 GGACACCTGAAGAAGATCAAATCTTGGTCTCTTTTATCCTCAACCATGGACATAGTAACT 392
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 305 GGACGCCTGAAGAAGATCAAATCTTGGTCTCTTTTATCCTCAAGCATGGCCATAGTAACT 364
Query 393 GGCGAGCCCTCCCTAAGCAAGCTGGTCTTTTGAGATGTGGAAAAAGCTGTAGACTTAGGT 452
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 GGCGAGCTCTCCCTAAGCAAGCTGGTCTTTTGAGATGTGGAAAAAGCTGTAGACTTAGGT 424
Query 453 GGATGAACTATTTAAAGCCTGATATTAAACGTGGCAATTTCACCAAAGAAGAGGAAGATG 512
||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 425 GGATGAACTATTTAAAGCCTGATATAAAACGTGGCAATTTCACCAAAGAAGAAGAGGATG 484
Query 513 CTATCATCAGCTTACACCAAATACTTGGCAATAGATGGTCAGCGATTGCAGCAAAACTGC 572
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct 485 CTATCATCAGCTTACACCAAATCCTTGGCAATAGATGGTCAGCGATTGCAGCGAAATTGC 544
Query 573 CTGGAAGAACCGATAACGAGATCAAGAACGTATGGCACACTCACTTGAAGAAGAGACTCG 632
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 CTGGAAGAACTGATAACGAGATCAAGAACGTATGGCACACTCACTTGAAGAAGAGACTCA 604
Query 633 AAGATTATCAACCAGCTAAACCTAAGACCAGCAACAAAAAGAAGGGTACTAAACCAAAAT 692
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 AAGATTATCAACCCGCTAAACCTAAGACCAGCAACAAAAAGAAGGGTACTAAACCAAAAT 664
Query 693 CTGAATCCGTAATAACGAGCTCGAACAGTACTAGAAGCGAATCGGAGCTAGC-AGATTCA 751
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 665 CTGAATCCGTAATAACGAGCTCGAACAGTACTAGAAGCGAATCGGAGCTAGCTA-ATTCA 723
Query 752 TCAAACCCTTCTGGAGAAAGCTTATTTTCGACATCGCCTTCGACAAGTGAGGTTTCTTCG 811
||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||||||
Sbjct 724 TCAAACCCTTCTGGAGAAAGCTTGTTTTCGGCATCACCTTCGACGAGTGAGGTTTCTTCG 783
Query 812 ATGACACTCATAAGCCACGACGG-CTATAGCAACGAGATTAATATGGATAACAAACCGGG 870
|||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 784 ATGACACTCATAAGCCACGAAGGAC-ATAGCAACGAGATTAATATGGATAACAAACCGGG 842
Query 871 AGATATCAGTACTATCGATCAAGAATGTGTTTCTTTCGAAACTTTTGGTGCGGATATCGA 930
||| ||| ||||||| ||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 843 AGACATCGGTACTATATATCAAGATTGTGTTTCTTTAGAAACTTTTGGTGCGGACATCGA 902
Query 931 TGAAAGCTTCTGGAAAGAGACACTGTATAGCCAA-GATGAACACAACTACGTATCGAATG 989
||| ||||| ||||| |||||||| ||||||||| | |||||||||||| | |||||||
Sbjct 903 TGACAGCTTTTGGAACGAGACACTCTATAGCCAAAG-TGAACACAACTATGCCTCGAATG 961
Query 990 ACCTAGAAGTGGCTGGTTTAGTTGAGATACAACAAGAGTTTCAAAACTTGGGCTCCGCTA 1049
||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| ||
Sbjct 962 ACCTAGAAGTGGCTGGTTTAGATGAGATACAACAAGAGTTTCAACACTTAGGCTCCGTTA 1021
Query 1050 ATAATGAGATGATTTTTGACAGTGAGATGGACTTCTGGTTCGATGTATTGGCTAGAACCG 1109
|||||||||||||||| || |||||||||||||||||||||||||||||||| ||| | |
Sbjct 1022 ATAATGAGATGATTTTCGATAGTGAGATGGACTTCTGGTTCGATGTATTGGCGAGAGCAG 1081
Query 1110 GCGGGGAACAAGATCTCTTAGCCGGGCTCTAGTTAACATGTTTGAGGAGTAAAGTGAAAT 1169
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1082 GCGGGGAACAAGATCTCTTAGCCGGGCTCTAATTAAAATGTTTGAGGAGTAAAGTGAAAT 1141
Query 1170 GGTGCAAATTAGTTAAGGCTAAGAAATTCAAAAGCTTTTGTTTACCGAGaaaaaaaCACA 1229
||||||||||| || | | | ||| ||| | ||||||| |||
Sbjct 1142 GGTGCAAATTA-TT-----T------T------G-TTT-----ACC-A-AAAAAAA-ACA 1174
Query 1230 CTCTAACTCTTGATGTGATGT-AGTTAGTGTATTAATTAGAGGCTGCGTTTTCAAAAAAT 1288
|||||||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct 1175 CTCTAACTGTTGATGTGATGTTAGTTAGTATATTATTTAGAGGCTGCGTTTTCAAAAAAT 1234
Query 1289 TGAATTCATTTGTTTCTCCAAAATTGAGTAGTT 1321
|| |||||||||||||||||| |||||||||||
Sbjct 1235 TGTATTCATTTGTTTCTCCAAGATTGAGTAGTT 1267
Score = 327 bits (177), Expect = 9e-89
Identities = 227/249 (91%), Gaps = 12/249 (5%)
Strand=Plus/Plus
Query 5 AAAACATACTTTTGACTATGTTGCCAATAATCAAAAAGACA--tctc--tctc--tctct 58
||||||||||||||||||||||||| |||| |||||||||| |||| |||| |||||
Sbjct 1 AAAACATACTTTTGACTATGTTGCCTATAACCAAAAAGACATCTCTCTATCTCTTTCTCT 60
Query 59 ctctcACATCCTATTTTCCAAGAAGCTCACCAATGCTTTTGAATTCTCCCACATGTCTTT 118
||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 61 CTCTCTCATCCTA-TTTCCAAGAAGCTCA-CAATGCTTTTGAATTCTCTCACATGTCTTT 118
Query 119 TGACAATTTTAGTATAAATACTCAAACCCCTTAGTCAGTCATTCTCAT--GTTCATCAAC 176
|||||||||||||||||||||| || ||| | |||||||||||||||| ||||||||||
Sbjct 119 TGACAATTTTAGTATAAATACTTAA-CCCATCAGTCAGTCATTCTCATATGTTCATCAAC 177
Query 177 AGCATTTGATCTCAAGCTCATAGGAATTTGATCTCCACATTATATCTTGATCATCACCAC 236
| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 178 AACATTTGATCTCAAGCTCATAAGAATTTGATCTCCACATTATATCTTGATCGTCACCAC 237
Query 237 AAGA-AAAA 244
|||| ||||
Sbjct 238 AAGACAAAA 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50246004606
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5