BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23255.2
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479840 jgi|Araly1|479840|fgenesh2_kg.3__2541__AT3G23255.1 994 0.0
> Ahg479840 jgi|Araly1|479840|fgenesh2_kg.3__2541__AT3G23255.1
Length=764
Score = 994 bits (538), Expect = 0.0
Identities = 675/740 (91%), Gaps = 13/740 (2%)
Strand=Plus/Plus
Query 74 ATGGTAGAGAGATTCTTCCCGACGAAGCGGAGCTCCGGCGAC-GAGAATCACCGTCGGGG 132
||||| |||||||| ||||||||||||||||||||||||||| || ||| ||| | |||
Sbjct 1 ATGGTGGAGAGATTTTTCCCGACGAAGCGGAGCTCCGGCGACGGA-AATTGCCGGC-GGG 58
Query 133 A-AATCTCTCGCTTCTCTCCGGTCCAATTTCCTCAGGCAAAACCTCTCTGCTCTTCCAAT 191
| || || | || ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 59 ATAAACTAACTCTCCTCTCCGGTCCAATTTCGTCAGGCAAAACCTCTCTACTCTTCCAAT 118
Query 192 TAGCTCTCAATGTAGCGAGTGCTTCTACAACCACTCGTGTCGTCTTCATCTGTCACCGGa 251
| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct 119 TCGCTCTCAATGTAGCGAGTGCTTCTTCAAACAATCGTGTCGTCTTCATCTGTCACCGGA 178
Query 252 aaaaaaTCGAATCCAATCCTCCGTTTCTCTCTCAGGGAATCGATCCTTCCTCTGATGTAT 311
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AAAGAATTGAATCCAATCCTCCGTTTCTCTCTCAGGGAATCGATCCTTCCTCTGATGTAT 238
Query 312 TCAATCGAATCCAGATTAAATATGTAGATGATGATGAAGGAATCAGAAAATACTTTGCTG 371
|||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 239 TCAATCGAATTCAGATGAAATATGTGGATGATGATGAAGGAATCAGGAAATACTTTGCTG 298
Query 372 CGTTTCATCTTCATCATGTTGATGATTTACCATCTGCAGTTATAATCGATGATTTTGGTG 431
||||||||||||||| |||||||||||| ||| ||| ||||||||||||||||| || |
Sbjct 299 CGTTTCATCTTCATCGTGTTGATGATTTTCCAAATGCGGTTATAATCGATGATTTCGGCG 358
Query 432 ATTACTTTAG-CAAATTGAACTCGGTGATGAATTCTCGGGCTAGAGACATGGCGATGGTT 490
|||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 359 ATTACTTTAGTC-AATTGAACTCGATGATGAATTCTCGGGCTAGAGACATGGCGATGGTT 417
Query 491 CGGACTCTTGCTCTATGCCACAATGCTATAGTTGATGCTAATAGGAAAGCTTTGTGCGAG 550
||||||||||||||||||||||||||||||| ||||||||| | || ||||| || |||
Sbjct 418 CGGACTCTTGCTCTATGCCACAATGCTATAGCTGATGCTAA--GCAA-GCTTTTTGTGAG 474
Query 551 CTTGTCTTATCTGAGACTAACCATGGAGACTCTCCGAGGTCGTTGTTCATCTACAAACGA 610
||||| || |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 475 CTTGTATTGTCTGAGACTAACCATGGAGACTCTCCGAGGTCGTTGTTTATATACAAACGA 534
Query 611 TGGATTCCGAAGATCTTTACTATAAAAGGTCATGGTGATGGATCGTTTCTATTGACAAGT 670
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 535 TGGATCCCGAAGATCTTTACGATAAAAGGTCATGGTGATGGATCGTTTCTCTTGACAAGT 594
Query 671 AATGATACATCCGAGAGAAGCGCCAAGTATTCGATCGCGCTGCAATATCTCATCTTGGAG 730
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 AATGGTACATCCGAGAAAAGCGCCAAGTATTCGATCGCGCTGCAATATCTCATCTTGGAG 654
Query 731 CAGATTATTGAT-GATAGTTAGTTAACAGAGGAGAGTATCCCCT-AGTGACAAGTTCTGT 788
||||| |||||| | || |||||| || ||| |||||||| ||| | ||| |||||||||
Sbjct 655 CAGATGATTGATAGTTA-TTAGTTCACTGAGAAGAGTATCTCCTTA-TGAAAAGTTCTGT 712
Query 789 TTTTAAGATATTTTAGTCAA 808
||||| |||||||| |||||
Sbjct 713 TTTTATGATATTTTTGTCAA 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34463116968
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5