BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23260.1
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319045 jgi|Araly1|319045|fgenesh1_pm.C_scaffold_3002061 725 0.0
> Ahg319045 jgi|Araly1|319045|fgenesh1_pm.C_scaffold_3002061
Length=1029
Score = 725 bits (392), Expect = 0.0
Identities = 543/613 (89%), Gaps = 22/613 (4%)
Strand=Plus/Plus
Query 1 ATGGAGTGGAGAAGCCTTCCGGTGGAATTGCAAGAAGAGATACTTTCTAGGGTTCCGGCT 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGTGGAGAAGCCTTCCGTTGGAATTGCAAGAAGAGATACTTTCTAGGGTTCCGGCA 60
Query 61 AAATATTTGGCACGATTGCGATCAACATCGAAACAATGGAACGCTCTATC-GAAAACTGG 119
|||| | ||||||||||||| ||||| ||||||| |||||| |||||| | |||| ||||
Sbjct 61 AAATCTCTGGCACGATTGCGTTCAACGTCGAAACGATGGAATGCTCTA-CTGAAATCTGG 119
Query 120 GAGTTTTGCTAAGA-AGCACTCTGCTAATGCAACAA-AGGAG-C-C----TCTGATTATC 171
||| |||||||||| | ||||||||||||||| ||| | ||| | | | ||||||||
Sbjct 120 GAGCTTTGCTAAGATA-CACTCTGCTAATGCACCAACA-GAGTCTCTGATTATGATTATC 177
Query 172 ATGTTGAAGGATTCTAGGGTTTACTTAGCA-AGTGTCAATCTCCATGGAGTTCACAACAA 230
|||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 178 ATGTTGAAGGATTCTAGGGTTTACTTAG-AGATTGTCAATCTCCATGGAGTTCACAACAA 236
Query 231 CGTTGCTCAATCTTTTGAGTTAGGATCTCGATTGTACCTTAAAGATCCGCACATTTCTAA 290
|||||| | |||||||||||||||||||||||| ||||||||||| |||||||| | |||
Sbjct 237 CGTTGCCCCATCTTTTGAGTTAGGATCTCGATTATACCTTAAAGAGCCGCACATATGTAA 296
Query 291 CGTCTTTCACTGTGATGGCTTGTTATTGCTCTGCTCCATTAAGGAGAATACACTCGAGGT 350
||||||||||||||| ||||| |||||||| ||| | ||||||||||||| |||||||||
Sbjct 297 CGTCTTTCACTGTGAAGGCTTATTATTGCTATGCACTATTAAGGAGAATAGACTCGAGGT 356
Query 351 TTGGAATCCATGTTCAGGAGAAGCCAAGTTAATTAAACCTAGACACAGCTACTACAAGGA 410
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 357 TTGGAATCCATGTTCAGGAGAAACCAAGTTAATTAAACCTAGAAACAGCTACTACAAGGA 416
Query 411 ATCAGACTTTTATGCTCTTGGTTATGACAACAAATCCTCCTGCAAGAAATACAAAGTCTT 470
|||| |||||| |||||||||||| | ||||||||| ||| |||||||||||||||||||
Sbjct 417 ATCAAACTTTTTTGCTCTTGGTTACGCCAACAAATCTTCCGGCAAGAAATACAAAGTCTT 476
Query 471 GAGGGTG-ATTAGTCAAGTCCATGTTCAAGGTGA-CTTCAAGATTGAGTACGAAATCTAT 528
||| ||| || ||| || |||||||| ||| | || ||| | ||||||||||||||||
Sbjct 477 GAGCGTGGATC-GTCGAGACCATGTTCCTGGT-ATCTCCAACAATGAGTACGAAATCTAT 534
Query 529 GACTTCACCAATGATTCTTGGAGGGTTCATGGTGCGACTACCGAACT-GTCT-ATAAGAC 586
||||| |||||||||||||||||||||| ||||| ||||||| || | | | |||||||
Sbjct 535 GACTTTACCAATGATTCTTGGAGGGTTCTTGGTGTGACTACC-AA-TAGGATTATAAGAC 592
Query 587 AAAAGCATCCCGT 599
|||| ||||||||
Sbjct 593 AAAATCATCCCGT 605
Score = 435 bits (235), Expect = 4e-121
Identities = 370/433 (85%), Gaps = 18/433 (4%)
Strand=Plus/Plus
Query 666 TTTTGATTTTTCAACCGAGAGATTTCAAAGTCTGTCTCTTCCTCAGCCGTTTCCTTATCT 725
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 606 TTTTGATTTTTCAACAGAGAGATTTCAAAGTCTGTCTCTTCCTCAGCCGTTTCCTTATAT 665
Query 726 GGTTACGGATTTATCAGTGGTTAGAGAAGAGCAACTCTGTCTGTTTGGTTATTATAATT- 784
||| ||| ||||||||||||||||||||| ||||||||| |||| ||||||||||||
Sbjct 666 AGTTGCGGCTTTATCAGTGGTTAGAGAAGAACAACTCTGTTTGTTAGGTTATTATAATAA 725
Query 785 GGTCAACA-ACTTCAGAAGACTTAAATGTATGGGTGACAACTAGTCTCGGATCAGTCGTG 843
|| |||| | |||||||||||||||| ||||||||||| ||||| ||||||||||| ||
Sbjct 726 GGA-AACATA-TTCAGAAGACTTAAATTTATGGGTGACATCTAGTATCGGATCAGTCATG 783
Query 844 TCATGGAGCAAGTTCTTAACAATACAAATCATTAAGCCGAGAGT-GG-A--TAT-GTTTG 898
||||||||||||||||||||| | || | |||||| ||| | || || | ||| |||||
Sbjct 784 TCATGGAGCAAGTTCTTAACAGTGCACACCATTAATCCG-G-GTCGGGAAATATTGTTTG 841
Query 899 ATTATGGGATGAGTTTCTTGGTCGACGAGCAAAACAAA-TCTTTAGTGTGTTGGA-TCTC 956
| |||| ||||||||||||| || ||||||| |||| | ||||||||||| | | |
Sbjct 842 CTGATGGTATGAGTTTCTTGGCCGTGGAGCAAACCAAAGT-TTTAGTGTGTTTCAGTAAC 900
Query 957 CCAAAAAGTCTTACACATTGTGGGAGAAATTTATCACATACAAGATTTGGATGATCATGG 1016
| ||| |||||| ||||||||||||| | || |||||||| || ||||||||||||
Sbjct 901 C-AAA---TCTTACGTATTGTGGGAGAAAATAATAACATACAACATGTGGATGATCATGA 956
Query 1017 TAGAGATTCTGCGTTAAGATCATCATGCTCAGTTCTTATGAATTATGTTCCAAGTTTAGC 1076
|||||||||| || ||||||||| |||||||||||| |||| || ||||||||||||||
Sbjct 957 TAGAGATTCTATGTCAAGATCATCTTGCTCAGTTCTTCTGAAATACGTTCCAAGTTTAGC 1016
Query 1077 CCAAATCCAATAA 1089
|||||||||||||
Sbjct 1017 CCAAATCCAATAA 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40562783688
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5