BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23280.1
Length=1946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930354 jgi|Araly1|930354|scaffold_302811.1 2298 0.0
Ahg493466 jgi|Araly1|493466|fgenesh2_kg.7__2899__AT4G14365.1 477 1e-133
> Ahg930354 jgi|Araly1|930354|scaffold_302811.1
Length=1429
Score = 2298 bits (1244), Expect = 0.0
Identities = 1366/1425 (96%), Gaps = 7/1425 (0%)
Strand=Plus/Plus
Query 219 TTTCTGATCTGTGAGCAAAAATGGGACAACAGCAATCAAAAGGGGAATTGCTGTATCAGC 278
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTCTGATCTGTGAGGAGAAATGGGACAACAGCAATCAAAAGGGGAATTGCTGTATCAGC 60
Query 279 AAGTTAGTTATGGTAACTCTGAAGGAATTCGAGCTCTTCATCGAGATGGTGGAGACCTTG 338
|||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 61 AAGTGAGTTATGGTAACTCTGAAGGAATTCGAACTCTTCATCGAGATGGTGCAGACCTTG 120
Query 339 AGTGGATGGATAGAGAAGGAAAAACTCCGTTGATCTTGGCTTGTATGAACTCCGAGCTAT 398
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 121 AGTGGATGGATAGAGAAGGAAAAACTGCGTTGATCTTGGCTTGTATGAACTCGGAGCTAT 180
Query 399 TTGATGTTGCTAAGACTTTGATTGAGTTGGGTTCTAATGTTAATGCTTATCGTCCTGGTC 458
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 ATGATGTTGCTAAAACTTTGATTGAGCTGGGTTCTAATGTTAATGCTTATCGTCCTGGTC 240
Query 459 GTCATGCTGGGACTCCTCTGCACCATGCTGCAAAAAGAGGTCTTGAGAACACTGTTAAGT 518
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 GTCATGCTGGGACTCCTCTGCACCATGCTGCAAAAAGAGGTCTTGAGAACATTGTTAAGT 300
Query 519 TACTTCTTTCTCACGGTGCGAATCCACTTGTTCTTAATGATGATTGTCAGACACCACTTG 578
|||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 301 TACTTCTTTCGCACGGTGCAAATCCACTTGTTCTCAATGATGATTGTCAGACACCACTTG 360
Query 579 AGGTCGCTAGAGTCAAAGGGTTTAGCAATGTTGTACGTGCAATTGAGAAACACATCTGCT 638
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 361 AGGTTGCTAGAGTCAAAGGGTTCAGCAATGTCGTACGTGCAATTGAGAAACACATCTGCT 420
Query 639 TGTTCTCGGGTTGGATGCGTGAATTTTACGGCCCTACCTTTCTCGACTTATTTGCTCCGC 698
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGTTCTCGGGTTGGATGCGGGAATTTTACGGCCCTACCTTTCTCGACTTATTTGCTCCGC 480
Query 699 AGCTTCTTTCAAGAAGAGTATGGGTAGTCATTGTACCTACTGGTTCAAGAAACCCTACAA 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGCTTCTTTCAAGAAGAGTATGGGTAGTCATTGTACCTACTGGTTCAAGAAACCCTACAA 540
Query 759 AGCCTTTCAAGTTGGAGCTGGTTGTGTATGCTAGTCTGCAAGATGCACAGCCACGCAC-A 817
|||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 541 AGCCTTTCAAATTGGAGCTGGTTGTGTATGCTAGTCTGCAGGATGCGCAGCCACGCACGA 600
Query 818 GTGATGCCTTTGTGGAAAGCAAACTTGGAAGAACCAAAAGCGAAGCAGTCCGATACTTCA 877
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 601 -TGATGCCTTTGTGGAAAGCAAACTTAGAAGAACCAAAAGCAAAGCAGTCCGATACTTCA 659
Query 878 GTGATGATCGTTGATAACTCCACAATCCCAAGCCGCAGGATGAAGAAACGAAGGGTCTGC 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTGATGATCGTTGATAACTCCACAATCCCAAGCCGCAGGATGAAGAAACGAAGGGTCTGC 719
Query 938 GCCTCCCACGGGAGACGTAGGCCTCAAGTAGTTAGGCAAACACGTCTTAAATTCGCACCT 997
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 720 GCCTCCCACGGGAGACGTAGGCCTCAAGTAGTTAGGCAAACACGACTTAAACTCGCACCT 779
Query 998 TCGACTGAAGGTGACAGCCAACAGCTAAAGTGGTTTTGTGATGCATGTAAAGGGATTCCA 1057
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 780 GCGACTGAAGGTGACAGCCAACAGCTGAAGTGGTTTTGTGATGCATGTAAAGGAATTCCA 839
Query 1058 CAGCCGATGCATCCACCGGTCTTCCTCCAAGCACCACCATCTGCTCCACCACCACCATCA 1117
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 840 CAGCCGATGCATCCACCGGTCTTCCTCCAAACAGCACCATCTGCTCCACCACCACCATCA 899
Query 1118 GAAGATGGACTAGCCATGGGAATGAACGCCTCACTTCACACTACTATGAGTGACCCATCA 1177
||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 900 GAAGATGAACTAGCCATGGCAATGAACGCCTCGCTTCACACTACTATGAGTGACCCATCA 959
Query 1178 AATCTCAATCACCATTCCATCGGTCAAGCAAGTTCCTCATCCGGTCCAAGCTCATCAACT 1237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AATCTCAATCACCATTCCATCGGTCAAGCAAGTTCCTCATCCGGTCCAAGCTCATCAACC 1019
Query 1238 GCACCTCCCTCAGGAAAAGCAAGTGCCTTTG-GATTCAATAGCCATGGAATTGGCATTGT 1296
|| |||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct 1020 GCCCCTCCCTCAGGAAAAGCAAGCGCCTTTGCG-TTCAATAGCCATGGAATTGGCATTGT 1078
Query 1297 GCTAGAATCTTCACCATCAGCTCCTCCATTGACAGATGATGATATAGCTA-CAGTAGACG 1355
|||||||||||||||||||||||||||||||||||| |||||||||| | | |||||||
Sbjct 1079 CCTAGAATCTTCACCATCAGCTCCTCCATTGACAGATAATGATATAGC-AGCCGTAGACG 1137
Query 1356 ATGGTCCAATTCATTACCCATCAATCGATTCAACACCAGTCGATCTCCCATCTGCTGCTT 1415
| |||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||
Sbjct 1138 AAGGTCCAATTCATTACCCATCGATCGATTCAACACCTGTCGATCTCCCATCTGCTTCTT 1197
Query 1416 CTCTTCCAGCTTCAACAGAAGGTGAAAGGAAAGAAGACGGGAACACTGGAACGTGTGCGA 1475
||||||||||| |||| ||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1198 CTCTTCCAGCTCCAACCGAAGGTGAAAGGAAAGAAGACGGGAGCACTGGAACATGTGCGA 1257
Query 1476 TATGTCTCGATGCTCCATCTGAAGCAGTCTGTGTCCCGTGTGGACATGTCGCGGGATGTA 1535
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TATGTCTAGATGCTCCATCTGAAGCAGTCTGTGTCCCGTGTGGACATGTCGCGGGATGTA 1317
Query 1536 TGTCTTGCTTGAAGGAGATCAAATCCAAGAATTGGGGATGTCCCGTCTGTCGAGCCAAGA 1595
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1318 TGTCTTGCTTGAAGGAGATCAAATCCAAGAATTGGGGATGTCCTGTCTGTCGCGCCAAGA 1377
Query 1596 TCGATCAGGTTATTAAGCTGTACCGTGTCTGAAAACAGGTATCAA 1640
||||||||||| ||||||||||||| ||||||||||||||| |||
Sbjct 1378 TCGATCAGGTTGTTAAGCTGTACCGGGTCTGAAAACAGGTA-CAA 1421
> Ahg493466 jgi|Araly1|493466|fgenesh2_kg.7__2899__AT4G14365.1
Length=1299
Score = 477 bits (258), Expect = 1e-133
Identities = 596/755 (79%), Gaps = 39/755 (5%)
Strand=Plus/Plus
Query 338 GAGTGGATGGATAGAG-AAGGAAAAACTCCGTTGATCTTGGCTTGTATGA-ACTCCGAGC 395
||| || |||||| || ||| | ||| || || ||||| ||||||| | || || |
Sbjct 161 GAGGGGGTGGATA-AGTTAGGGAGAACACCATTAATCTTAGCTTGTA-CAGACGATGATC 218
Query 396 TATTTGATGTTGCTAAGACTTTGATTGAGTTGGGTTCTAATGTTAATGCTTATCG-TCCT 454
||| |||||| | || ||| || ||||||||||||| ||||| ||||| ||||| |||
Sbjct 219 TATATGATGTAACAAAAACTCTGCTTGAGTTGGGTTCCAATGTCAATGCCTATCGTTCC- 277
Query 455 GGTCGTC-ATGCTGGGACTCCTCTGCACCATGCTGCAAAAAGAGGTCTTGAGA-ACACTG 512
||| | | ||| |||||||||||||||||||||||||| ||||||||| | | |||| |
Sbjct 278 GGTTG-CAATGGTGGGACTCCTCTGCACCATGCTGCAAGAAGAGGTCTCG-TACACACGG 335
Query 513 TTAAGTTACTTCTTTCTCACGGTGCGAATCCACTTG-TTCTTAATGATG-ATTGTCAGAC 570
||||||||||||| ||||||||||| || || | || ||||| |||||| | | ||||||
Sbjct 336 TTAAGTTACTTCTGTCTCACGGTGCAAAACC-CCTGATTCTTGATGATGAAAT-TCAGAC 393
Query 571 ACCACTTGAGGTCGCTAG-AGTCAAAGGGTT-TAGCAATGTTGTACGTGCAATTGAGAAA 628
| || ||||| ||||| | | || |||| || ||||||||||| ||||| ||||
Sbjct 394 GGCTCTCGAGGTTGCTAGAACT-GAA-GGTTACAGTAATGTTGTACGCGCAATCGAGAGT 451
Query 629 CACATCTGCTTGTTCTCGGGTTGGATGCGTGAATTTTACGGCCCTACCTTTCTCGACTTA 688
|| |||||||||||||| ||||| |||||||| ||||| ||||| | |||||| || | |
Sbjct 452 CATATCTGCTTGTTCTCTGGTTGTATGCGTGAGTTTTATGGCCCCAGCTTTCTTGAATCA 511
Query 689 TTTGCTCCGCAGCTTCTTTCAAGAAGAGTATGGGTAGTCATTGTACCTACTGGTTCAAGA 748
|||||||| | |||||||||||||| |||||||||||| | ||||| ||||||||||||
Sbjct 512 TTTGCTCCTCGGCTTCTTTCAAGAAAAGTATGGGTAGTTGTCGTACCAACTGGTTCAAGA 571
Query 749 AACCCTACAAAGCCTTTCAAGTTGGAGCTGGTTGTGTATGCTAGTCTGCAAGATGCACAG 808
||||||||||||||||| ||||||||| ||| |||||||| |||||| || ||||||||
Sbjct 572 AACCCTACAAAGCCTTTAAAGTTGGAGTTGGCTGTGTATGATAGTCTTCAGGATGCACAA 631
Query 809 CCACGCACAGTGATGCCTTTGTGGAAAGCAAACTTGGAAGAACCAAAAGCGA-AGCAGTC 867
||| | | |||||| |||||||||||| |||||||| ||||||||| | | | |||||
Sbjct 632 CCAAGGATGGTGATGGATTTGTGGAAAGCTAACTTGGAGGAACCAAAATC-ATATCAGTC 690
Query 868 CGAT-ACTTCAGTGATGATCGTTGATAACTCCACAA-TCCCAAGCCGCAGGATG-A-AGA 923
||| | || |||||||| |||||||||||| || ||| ||| ||| || | | |||
Sbjct 691 TGATGATTTG-GTGATGATTATTGATAACTCCAAAAGTCC-AAGGTGCATGAGGCAGAGA 748
Query 924 A-ACGAA-G-GG-TCTGCGCCTCCCACGGGAGACGTAGGCCTCAAGTAGTTAGGCAAACA 979
| | ||| | || | | | || || | ||| ||| || ||||||| | ||| |||| |
Sbjct 749 AGA-GAAAGCGGAT-T-CATTTCTCAAGCGAGGCGTTGGGCTCAAGTCGATAGACAAATA 805
Query 980 CGTCTTAAATTCGCACCTTCGACTGAA-GGTGACA-GCCAACAGCTAAAGTGGTTTTGTG 1037
|||||||| | ||| || || | || ||||||| | ||||| |||| ||||||| ||
Sbjct 806 CGTCTTAAGCTGGCAGCTGAGA-TCAAAGGTGACATGA-AACAGTTAAATTGGTTTTCTG 863
Query 1038 ATGCATGTAAAGG-GATTCCACAGCCGATGCATCC 1071
| ||||||||||| | |||||||||| ||| ||||
Sbjct 864 AGGCATGTAAAGGAG-TTCCACAGCCAATGAATCC 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73133270400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5