BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23290.2
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930355 jgi|Araly1|930355|scaffold_302812.1 977 0.0
> Ahg930355 jgi|Araly1|930355|scaffold_302812.1
Length=637
Score = 977 bits (529), Expect = 0.0
Identities = 602/638 (94%), Gaps = 2/638 (0%)
Strand=Plus/Plus
Query 109 CCTTAGATAATCAGATCTTGATATTATGGATCATA-TCATCGGCTTTATGGGCACAACAA 167
|||||||| ||||||||||||||| ||||||| || || |||||||||||||||||||||
Sbjct 1 CCTTAGATTATCAGATCTTGATATCATGGATCCTATTC-TCGGCTTTATGGGCACAACAA 59
Query 168 ACATGTCACATAACACAAACCTTATGATCGCTGCCGCAGCCACTACCACTACGACCTCTT 227
||||||||||||||||||||||||||||||| || |||||||| ||||| || ||||| |
Sbjct 60 ACATGTCACATAACACAAACCTTATGATCGCCGCTGCAGCCACAACCACCACCACCTCCT 119
Query 228 CGTCTTCCTCTTCGTCCTCCGGAGGCTCGGGGACTAACCAGCTAAGCAGGTACGAGAATC 287
||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 120 CGTCTTCCTCTTCTTCCTCCGGCGGCTCGGGGACTAACCAGCTGAGCAGGTATGAGAATC 179
Query 288 AGAAGAGAAGAGATTGGAACACTTTCGGACAGTATCTACGCAATCACCGTCCACCACTTT 347
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 180 AGAAGAGAAGAGATTGGAACACTTTCGGACAATATCTCCGCAATCACCGTCCACCACTTT 239
Query 348 CTCTCTCCCGTTGCAGTGGTGCTCATGTTCTTGAATTCCTCAGGTACCTCGACCAATTCG 407
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTCTCTCCCGTTGTAGTGGTGCTCATGTTCTTGAATTCCTCAGGTACCTCGACCAATTCG 299
Query 408 GCAAGACTAAGGTTCACACACACCTATGTCCGTTCTTCGGACACCCAAACCCACCAGCAC 467
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 300 GCAAGACTAAGGTTCACACACACCTATGTCCGTTCTTCGGGCACCCAAACCCACCAGCAC 359
Query 468 CATGTGCCTGTCCACTCCGACAAGCGTGGGGTAGTCTGGACGCACTCATTGGCCGTCTTA 527
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 360 CATGTGCCTGTCCACTCCGACAAGCGTGGGGTAGCCTCGACGCACTCATTGGTCGTCTTA 419
Query 528 GAGCTGCTTTTGAAGAGAACGGTGGTTCACCAGAGACGAACCCTTTTGGTGCACGAGCCG 587
|||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 420 GAGCCGCTTTTGAAGAGAACGGTGGTTCTCCAGAGATGAACCCTTTTGGTGCACGAGCCG 479
Query 588 TTCGACTCTACCTAAGGGAAGTACGTGACTCGCAGGCTAAAGCACGTGGGATCAGCTATG 647
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 480 TTCGACTCTACCTAAGGGAAGTGCGTGACTCGCAGGCTAAAGCACGTGGAATCAGCTATG 539
Query 648 aaaaaaaGAAGCGCAAGCGACCTCCTCCGCCACTACCACCGGCTCAGCCGGCGATTTCAA 707
|||| |||||||| ||||||||||| ||||| |||||||||||| |||||||||||||||
Sbjct 540 AAAAGAAGAAGCGGAAGCGACCTCCCCCGCCGCTACCACCGGCTTAGCCGGCGATTTCAA 599
Query 708 GTAGCCCTAATTAACATTAAGTCATGAGTAAGATGTTT 745
||||||||||||| || ||||||||||| || ||||||
Sbjct 600 GTAGCCCTAATTAGCACTAAGTCATGAGAAAAATGTTT 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31184546106
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5