BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23300.1
Length=2335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479845 jgi|Araly1|479845|fgenesh2_kg.3__2546__AT3G23300.1 3513 0.0
Ahg493467 jgi|Araly1|493467|fgenesh2_kg.7__2900__AT4G14360.1 1977 0.0
> Ahg479845 jgi|Araly1|479845|fgenesh2_kg.3__2546__AT3G23300.1
Length=2317
Score = 3513 bits (1902), Expect = 0.0
Identities = 2203/2342 (94%), Gaps = 46/2342 (2%)
Strand=Plus/Plus
Query 15 TCTCTTTCGCTGCCGCTTTTGTTACTTTTTGTTCGTTCGAATCCCAATATAGACCAACGA 74
|||||||||||||||| |||||||| |||||||||||| ||||||||| |||| | ||
Sbjct 1 TCTCTTTCGCTGCCGC-TTTGTTAC-TTTTGTTCGTTCAAATCCCAATTTAGA-C-AC-C 55
Query 75 AGAAGAAGACGAAGAAGCAGTCTCTCAAACTTCTTCTCCAGATCCGAATCTCACTCTCAT 134
| | ||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 56 A-ACGAAGAAGAAGAAGCAGTCTCTGAAACTTCTTCTCCAGATCCGAATCTCTCTCTCAT 114
Query 135 TTCTCCGATCTCTCTATTTGAATGACCTACAATTTCGCATC-T-CTTTTGATCTTGATCT 192
||||||||||||||||||||||| |||||| |||||||||| | | |||||||||||||
Sbjct 115 TTCTCCGATCTCTCTATTTGAATAACCTACGATTTCGCATCTTGATCTTGATCTTGATCT 174
Query 193 CTGTTTCTCTCCTTCTACT-G-AATCTCTTGTTTTGAGTAATCACTAATATAC-ACAACG 249
|||||||||||||| |||| | |||| ||| ||||| |||||||||||| || | || |
Sbjct 175 CTGTTTCTCTCCTTGTACTGGTGATCTTTTGATTTGAATAATCACTAATACACTATAA-G 233
Query 250 GCGGCGATGAGGGGGAGATCAGAAGGAGGGAAGAAAAAGCCGGTGATTGTGTTACTCTGC 309
||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||| |||||
Sbjct 234 GCGGCGATGAGAGGGAGATCAGACGGAGGGAAGAAGAAGCCGGTGATTGTTTTAGTCTGC 293
Query 310 GTTGCATCAGTAGTGCTTGTTTTTGTATATCTCTTCTTTGGTTCCTCTAACCAT--A--A 365
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 294 GTTGCATCAGTAGTACTTGTTTTTGTATATCTCTTCTTTGGTTCATCTAACCATAAAGCA 353
Query 366 --AGCTATTGAGTATGGGAGGAAACTTGGTTTGGGT-G-G-TGATGATGATGATAGTACT 420
||||||||||||||| ||||||||||| ||| || | | ||||||||||||||||| |
Sbjct 354 TCAGCTATTGAGTATGGAAGGAAACTTGGATTGAGTGGAGATGATGATGATGATAGTA-T 412
Query 421 -AAGAAAGATGACAC-T-T-CTAGCTCTTTTTATGTAGAAGATGTAGTAGGGAATGGTTT 476
||||||||||| || | | ||||||||||||||||||||||| | |||| ||||||||
Sbjct 413 CAAGAAAGATGATACTTCTACTAGCTCTTTTTATGTAGAAGAT-T--TAGGCAATGGTTT 469
Query 477 CACTCCCAGAAGCTTTCCTGTGTGTGATGATCGACACTCGGAGCTTATTCCTTGCTTAGA 536
||| || ||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 470 CACACCTAGAAGCTTTCCTGTGTGTGATGATCGATACTCGGAGCTTATTCCTTGTTTAGA 529
Query 537 TAGGAATCTTATATACCAAATGAGATTGAAGCTTGATTTGTCTTTGATGGAGCATTATGA 596
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 TAGGAATCTTATTTATCAAATGAGATTGAAGCTTGATTTGTCTTTGATGGAGCATTATGA 589
Query 597 ACGTCACTGTCCTCCTCCTGAAAGGAGGTTTAATTGCTTGATTCCTCCTCCTCCAGGGTA 656
|||||| |||||||||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 590 ACGTCATTGTCCTCCTCCTGAAAGGCGGTTTAATTGCTTGATTCCTCCTCCTCCTGGATA 649
Query 657 TAAGATTCCAATCAAGTGGCCGAAAAGCAGAGACGAAGTTTGGAAAGTGAACATTCCTCA 716
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 650 TAAGATTCCAATCAAGTGGCCGAAAAGTAGAGATGAAGTTTGGAAAGTGAACATTCCTCA 709
Query 717 TACTCA-CTTAGCGCATGAGAAGTCTGACCAAAACTGGATGGTTGTTAAAGGAGAGAAAA 775
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TACTCATCTT-GCGCATGAGAAGTCTGACCAAAACTGGATGGTTGTTAAAGGAGAGAAAA 768
Query 776 TCAATTTCCCTGGTGGAGGCACACATTTTCATTATGGTGCTGATAAGTATATTGCATCAA 835
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TTAATTTCCCTGGTGGAGGCACACATTTTCATTATGGTGCTGATAAGTATATTGCATCAA 828
Query 836 TGGCAAATATGCTTAATTTTCCGAACAATGTTTTGAACAATGGGGGAAGGCTGAGGACAT 895
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 829 TGGCAAATATGCTTAACTTTCCGAACAACGTTTTGAACAATGGGGGAAGGCTGAGGACAT 888
Query 896 TTCTTGATGTTGGCTGTGGTGTTGCTAGCTTTGGAGGTTATCTTCTTGCATCAGAAATTA 955
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTCTTGATGTTGGTTGCGGTGTTGCTAGCTTTGGAGGTTATCTTCTTGCATCAGAAATTA 948
Query 956 TGACGATGTCTTTGGCACCTAATGATGTTCATCAGAACCAAATCCAATTTGCTCTTGAGA 1015
|||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 949 TGACGATGTCCTTGGCACCTAATGATGTTCATCAGAACCAAATTCAGTTTGCTCTTGAGA 1008
Query 1016 GAGGGATTCCTGCATACCTCGGCGTTCTAGGGACCAAGAGGCTCCCATACCCAAGCAGAT 1075
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GAGGGATTCCTGCATACCTTGGCGTTCTAGGGACCAAGAGGCTCCCATACCCAAGCAGAT 1068
Query 1076 CCTTTGAACTTGCTCACTGTTCACGTTGTCGTATCGATTGGCTTCAAAGAGATGGTATTC 1135
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 1069 CCTTTGAACTTGCTCACTGTTCGCGTTGCCGAATCGATTGGCTTCAAAGAGATGGTATTC 1128
Query 1136 TTCTTCTCGAGCTAGACAGGGTGCTAAGACCTGGTGGCTATTTTGCATATTCATCTCCAG 1195
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1129 TTCTTCTCGAGCTAGACAGGGTGCTAAGACCTGGTGGCTATTTTGCATATTCGTCTCCAG 1188
Query 1196 AAGCATATGCACAAGATGAAGAGGACCTCAGAATATGGAGAGAAATGAGTGCTCTTGTGG 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 AAGCATATGCACAAGATGAAGAGGACCTCAGAATATGGAGAGAAATGAGTGCTCTTGTGG 1248
Query 1256 GCCGTATGTGTTGGACGATAGCTGCAAAAAGGAATCAAACTGTAATTTGGCAAAAACCTT 1315
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 GGCGTATGTGTTGGACGATAGCTGCAAAAAGGAATCAAACTGTAATTTGGCAAAAACCTT 1308
Query 1316 TGACAAATGATTGTTATTTGGGAAGAGAACCTGGAACCCAGCCTCCTCTTTGCAATTCTG 1375
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1309 TGACAAATGATTGTTATTTGGGAAGAGAACCTGGAACCCAACCTCCTCTTTGCAATTCTG 1368
Query 1376 ACAGTGACCCTGATGCTGTGTATGGTGTAAACATGGAAGCATGCATTACTCAATACAGTG 1435
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1369 ATAGTGACCCCGATGCTGTGTATGGTGTAAACATGGAAGCCTGCATTACTCAATACAGTG 1428
Query 1436 ACCATGACCACAAAACCAAGGGAAGTGGATTGGCTCCATGGCCAGCTCGATTAACCTCTC 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 ACCATGACCACAAAACCAAGGGAAGTGGATTGGCTCCATGGCCAGCTCGATTAACCTCTC 1488
Query 1496 CTCCTCCTCGGCTAGCTGACTTTGGCTATTCCACTGACATTTTTGAGAAGGATACAGAAA 1555
||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||
Sbjct 1489 CTCCTCCTCGGCTAGCTGATTTTGGCTACTCCACTGACATGTTTGAGAAGGACACAGAAA 1548
Query 1556 CTTGGAGGCAGAGAGTAGATACTTATTGGGATCTCTTGAGTCCTAAAATTCAATCAGACA 1615
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 CTTGGAGGCAGAGGGTAGATACTTATTGGGATCTCTTGAGTCCTAAAATTCAATCAGACA 1608
Query 1616 CTGTAAGGAACATAATGGACATGAAAGCAAGCATGGGTTCCTTTGCTGCTGCTCTGAAAG 1675
|||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1609 CTGTGAGGAACATAATGGACATGAAAGCAAACATGGGTTCTTTTGCTGCTGCTCTGAAAG 1668
Query 1676 AAAAAGATGTTTGGGTTATGAATGTTGTTCCTGAAGACGGACCAAACACGCTTAAACTAA 1735
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1669 AAAAAGATGTTTGGGTTATGAATGTTGTCCCTGAAGACGGACCAAACACGCTTAAACTGA 1728
Query 1736 TATACGACAGAGGCCTGATGGGTGCTGTTCATAGCTGGTGTGAAGCGTTCTCGACTTACC 1795
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1729 TATACGACAGAGGCCTGATGGGCGCTGTTCATAGCTGGTGTGAAGCGTTCTCAACTTACC 1788
Query 1796 CGAGGACTTACGATTTACTCCATGCCTGGGACATCATATCTGATATCAAGAAGAGAGGTT 1855
|||||||||| ||||||||||| || ||||| |||||||||||||||| |||||||||||
Sbjct 1789 CGAGGACTTATGATTTACTCCACGCTTGGGATATCATATCTGATATCAGGAAGAGAGGTT 1848
Query 1856 GCAGCGCAGAAGATTTGCTGTTGGAGATGGATCGTATACTTCGTCCAAGCGGTTTCATAC 1915
| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1849 GTAGTGCAGAGGATTTGCTGTTGGAGATGGATCGTATTCTTCGTCCAAGCGGTTTCATAC 1908
Query 1916 TCATAAGGGACAAACAATCCGTAGTCGACCTTGTGAAGAAGTATCTCAAGGCTTTGCATT 1975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1909 TCATAAGGGACAAACAATCCGTAGTCGACCTTGTGAAGAAGTATCTCAAGGCTTTGCATT 1968
Query 1976 GGGAAGCAGTTGAAACCAAGACAGCCTCGGAATCAGACCAAGACTCGGACAATGTGATAC 2035
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 1969 GGGAAGCAGTTGAAACCAAGACAGCCTCAGAATCAGACCAAGACTCAGACAATGTCATAC 2028
Query 2036 TCATTGTCCAGAAGAAACTGTGGTTGACAAGTGAAAGCCTCAGAGATTTGGAGTGATTAC 2095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2029 TCATTGTCCAGAAGAAACTGTGGTTGACAAGTGAAAGCCTCAGAGATTTGGAGTGATTAC 2088
Query 2096 gatgatgatgatgatgaGGCCAAAAACTGCCTCCAACATGAAAAAACAAAACAACATTCA 2155
|||||||| | | ||||||||||||||||||||||||||| | |||||||||
Sbjct 2089 GATGATGA-G--G------CCAAAAACTGCCTCCAACATGAAAAAA-A---CAACATTCA 2135
Query 2156 CAAGAGATTTCTTTCTTGGGAGAATCTAATCGAAAACATACAACGAAGAAAATTCGTTTT 2215
|||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| |
Sbjct 2136 CAAGAGATTTCTTTCTTGAGCGAATCTAATCGAAAACATACAACGAAGAACATTCGTTAT 2195
Query 2216 ATAGCGGCAATTTAACGTTCTTTTCTCTTAAATCTTTCTTTCTTTACATATTCATATAAT 2275
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2196 ATAGCGGCAATTTAACGTTCTTTTCTCTTAAATCTTTCTTTCTTTACATATTCATATACT 2255
Query 2276 --GTTTGTATGGTTCGTTAGAGAGGACTAAAGTTTCTTATCAATTTAAACTCTTTTTGTT 2333
||||||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||
Sbjct 2256 TTGTTTGTATGGTTCATTAGAGATGACTAAAGTTTCCTATCAATTGAAACTCTTTTTGTT 2315
Query 2334 GC 2335
||
Sbjct 2316 GC 2317
> Ahg493467 jgi|Araly1|493467|fgenesh2_kg.7__2900__AT4G14360.1
Length=2403
Score = 1977 bits (1070), Expect = 0.0
Identities = 1606/1860 (86%), Gaps = 55/1860 (3%)
Strand=Plus/Plus
Query 256 ATGAGGGGGAGATCAGAAGGAGGG-AAGAAAAAGCCGGTGATTG-TGTTACTCTGCGTTG 313
|||| ||| ||||| || |||||| || || |||| |||||||| | || | |||||||
Sbjct 388 ATGAAGGGAAGATCGGATGGAGGGCAA-AAGAAGCGGGTGATTGCT-TTGGTTTGCGTTG 445
Query 314 CATCAGTAGTGCTTGTTTTTGTATATCTCTTCTTTGGTTCCTCTAACCATA-A--A---G 367
|| | ||||| |||||||| |||||||| |||| || || ||| | |||| | | |
Sbjct 446 CAGCGGTAGTTCTTGTTTTCGTATATCTGTTCTACGGCTCTTCTGATCATAGAGCATCGG 505
Query 368 CTATTGAGTATGGGAGGAAACTTGGTTTGGGTGGTGATGATGATGATAGTACTAAGA-AA 426
|||| || || ||||| ||||| || |||||||| |||||||||| | |||||| | |
Sbjct 506 CTATCGAATACGGGAGAAAACTCGGGTTGGGTGGGGATGATGATG--A-TACTAA-ACAG 561
Query 427 GATGACACTTCTAGCTCTTTTTATGTAGAAGATGTAGTAGGGAATGGTTTCACTCCCAGA 486
||||| ||||||||||| || | | | ||| | | | |||||||||| || |||
Sbjct 562 GATGATACTTCTAGCTC-----AT-TTG--G-TGTTG-A-TG-ATGGTTTCACGCCGAGA 609
Query 487 AGCTTTCCTGTGTGTGATGATCGACACTCGGAGCTTATTCCTTGCTTAGATAGGAATCTT 546
|| |||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 610 AGTTTTCCTGTGTGTGATGATCGGCATTCGGAGCTTATTCCTTGCTTAGACCGGAATCTC 669
Query 547 ATATACCAAATGAGATTGAAGCTTGATTTGTCTTTGATGGAGCATTATGAACGTCACTGT 606
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 670 ATATACCAAATGAGATTGAAGCTGGATTTGTCTTTGATGGAGCATTATGAACGTCATTGT 729
Query 607 CCTCCTCCTGAAAGGA-GGTTTAATTGCTTGATTCCTCCTCCTCCA-GGGTATAAGATTC 664
||||||||||||| || | ||||||||||||||||||||||| | || |||||| |||
Sbjct 730 CCTCCTCCTGAAA-GACGATTTAATTGCTTGATTCCTCCTCC-AAATGGATATAAGGTTC 787
Query 665 CAATCAAGTGGCCGAAAAGCAGAGACGAAGTTTGGAAAGTGAACATTCCTCATACTCA-C 723
|||| || ||||| ||||||||||| ||||| |||||||||||||| ||||||||||| |
Sbjct 788 CAATTAAATGGCCAAAAAGCAGAGATGAAGTGTGGAAAGTGAACATACCTCATACTCATC 847
Query 724 TTAGCGCATGAGAAGTCTGACCAAAACTGGATGGTTGTTAAAGGAGAGAAAATCAATTTC 783
|| || |||||||||||||||||||||||||||||||| |||||||| || || ||||||
Sbjct 848 TT-GCTCATGAGAAGTCTGACCAAAACTGGATGGTTGTCAAAGGAGATAAGATTAATTTC 906
Query 784 CCTGGTGGAGGCACACATTTTCATTATGGTGCTGATAAGTATATTGCATCAATGGCAAAT 843
|| || ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 907 CCAGGCGGAGGCACACATTTTCACTATGGGGCTGATAAGTATATTGCATCGATGGCAAAT 966
Query 844 ATGCTTAATTTTCCGAACAATGTTTTGAACAATGGGGGAAGGCTGAGGACA-TTTCTTGA 902
|||||||| |||||||| || |||||||||||||| |||||||| |||||| ||| ||||
Sbjct 967 ATGCTTAACTTTCCGAATAACGTTTTGAACAATGGTGGAAGGCTAAGGACAGTTT-TTGA 1025
Query 903 TGTTGGCTGTGGTGTTGCTAGCTTTGGAGGTTATCTTCTT-GCATCAGAAATTATGACGA 961
|||||| ||||||||||| |||||||||||||||||| || ||||||| ||| || | |
Sbjct 1026 TGTTGGTTGTGGTGTTGCGAGCTTTGGAGGTTATCTT-TTATCATCAGATATTCTGGCAA 1084
Query 962 TGTCTTTGGCACCTAATGATGTTCATCAGAACCAAATCCAATTTGCTCTTGAGAGAGGGA 1021
|||| || || || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1085 TGTCCTTAGCTCCAAATGATGTGCATCAGAACCAAATCCAATTTGCTCTTGAGAGAGGGA 1144
Query 1022 TTCCTGCATACCTCGGCGTTCTAGGGACCAAGAGGCTCCCATACCCAAGCAGATCCTTTG 1081
||||||| | |||||| ||| ||||||| ||||| |||||||||||||||||||| ||||
Sbjct 1145 TTCCTGCCTCCCTCGGTGTTTTAGGGACAAAGAGACTCCCATACCCAAGCAGATCTTTTG 1204
Query 1082 AACTTGCTCACTGTTCACGTTGTC-GTATCGATTGGCTTCAAAGAGATGGTATTCTTCTT 1140
|||||||||||||||||||||| | | ||||||||||||||||||||||| |||||||||
Sbjct 1205 AACTTGCTCACTGTTCACGTTG-CAGAATCGATTGGCTTCAAAGAGATGGGATTCTTCTT 1263
Query 1141 CTCGAGCTAGACAGGGTGCTAAGACCTGGTGGCTATTTTGCATATTCATCTCCAGAAGCA 1200
|||||||||||||| || || ||||||||||| ||||||||||||||||||||||| |||
Sbjct 1264 CTCGAGCTAGACAGAGTACTTAGACCTGGTGGTTATTTTGCATATTCATCTCCAGAGGCA 1323
Query 1201 TATGCACAAGATGAAGAGGACCTCAGAATATGGAGAGAAATGAGTGCTCTTGTGG-GCCG 1259
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||| || |
Sbjct 1324 TATGCACAAGATGAAGAGGACCTCCGAATCTGGAGAGAAATGAGTGCTCTTGTGGAGC-G 1382
Query 1260 TATGTGTTGGACGATAGCTGCAAAAAGGAATCAAACTGTAATTTGGCAAAAACCTTTGAC 1319
||||||||||| ||| || ||||||||||| |||||||| |||||| |||||||||||||
Sbjct 1383 TATGTGTTGGAAGATCGCGGCAAAAAGGAACCAAACTGTTATTTGGGAAAAACCTTTGAC 1442
Query 1320 AAATGATTGTTATTTGGGAAGAGAACCTGGAACCCAGCCTCCTCTTTGCAATTCTGACAG 1379
||||||||||||| ||| ||||||||||||||| ||||||||||||||| |||||| |
Sbjct 1443 AAATGATTGTTATCTGGAAAGAGAACCTGGAACTCAGCCTCCTCTTTGCCGTTCTGATAA 1502
Query 1380 TGACCCTGATGCTGTGTATGGTGTAAACATGGAAGCATGCATTAC-TCAATACAGTGACC 1438
||| ||||||||||||| || |||||||||||||| |||||||| || ||||||||||
Sbjct 1503 TGATCCTGATGCTGTGTGGGGCGTAAACATGGAAGCCTGCATTACATCT-TACAGTGACC 1561
Query 1439 ATGACCACAAAACCAAGGGAAGTGGATTGGCTCCATGGCCAGCTCGATTAACCTCTCCTC 1498
|||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 1562 ATGACCACAAAACCAAGGGAAGTGGATTAGCTCCATGGCCGGCTCGGTTAACCTCTCCTC 1621
Query 1499 CTCCTCGGCTAGCTGACTTTGGCTATTCCACTGACATTTTTGAGAAGGATACAGAAACTT 1558
||||| |||| ||||| ||||| ||||| |||| ||| || |||||||| || ||| |||
Sbjct 1622 CTCCTAGGCTTGCTGATTTTGGATATTCAACTGGCATGTTCGAGAAGGACACGGAA-CTT 1680
Query 1559 -GGAGGCAGAGAGTAGATACTTATTGGGATCTCTTGAGTCCTAAAATTC-AATCAGACAC 1616
||||||| |||||||||||||||||||||||||||||||||| ||| | ||||||| ||
Sbjct 1681 TGGAGGCAAAGAGTAGATACTTATTGGGATCTCTTGAGTCCTAGAAT-CGAATCAGATAC 1739
Query 1617 TGTAAGGAACATAATGGACATGAAAGCAAGCATGGGTTCCTTTGCTGCTGCTCTGAAAGA 1676
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1740 AGTGAGGAACATAATGGACATGAAAGCAAGCATGGGCTCCTTTGCTGCTGCTCTGAAAGA 1799
Query 1677 AAAAGATGTTTGGGTTATGAATGTTGTTCCTGAAGACGGACCAAACACGCTTAAACTAAT 1736
||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 1800 AAAAGATGTCTGGGTAATGAATGTTGTTCCTGAGGACGGACCTAACACGCTTAAACTGAT 1859
Query 1737 ATACGACAGAGGCCTGATGGGTGCTGTTCATAGCTGGTGTGAAGCGTTCTCGACTTACCC 1796
||| |||||||| || ||||| || |||||||||||||||||||| |||||||| || ||
Sbjct 1860 ATATGACAGAGGTCTAATGGGCGCAGTTCATAGCTGGTGTGAAGCATTCTCGACATATCC 1919
Query 1797 GAGGACTTACGATTTACTCCATGCCTGGGACATCATATCTGATATCAAGAAGAGAGGTTG 1856
||| || || ||| | |||||||| ||||||||||| || |||||||| || | ||| ||
Sbjct 1920 GAGAACCTATGATCTCCTCCATGCTTGGGACATCATCTCGGATATCAATAAAAAAGGGTG 1979
Query 1857 CAGCGCAGAAG-ATTTGCTGTTGGAGATGGATCGTATACTTCGTCCAAGCGG-TTTCATA 1914
|| | || | ||||| | ||||||||||||| ||||| || || ||||| ||| |||
Sbjct 1980 TAGTG-AGGTGGATTTGTTACTGGAGATGGATCGAATACTGCGCCCGAGCGGGTTT-ATA 2037
Query 1915 CTCATAAGGGACAAACA-ATCCGTAGTCGACCTTG-TGAAGAAGTATCTCAAGGCTTTGC 1972
|||||||||| ||||| | || || || ||| | ||||||||||| ||||| ||||
Sbjct 2038 ATCATAAGGGATAAACAGAGA-GTGGTGGAT-TTGGTTAAGAAGTATCTAAAGGCATTGC 2095
Query 1973 ATTGGGAAGCAGTTGAAACCAAGACAGCCTCGGAATCAGACCAAGACTCGGACAATGTGA 2032
||||||||| ||| | |||||||||| || || ||||| ||||| || |||||||| |
Sbjct 2096 ATTGGGAAGAAGTAGGGACCAAGACAGATTCAGATTCAGATCAAGATTCAGACAATGTTA 2155
Query 2033 TACTCATTGTCCAGAAGAAACTGTGGTTGACAAGTGAAAGCCTCAGAGATTTGGAGTGAT 2092
|| ||||||| |||||||| |||||||||| ||||||||||| |||||| |||||||||
Sbjct 2156 TATTCATTGTTCAGAAGAAGTTGTGGTTGACTAGTGAAAGCCTTAGAGATATGGAGTGAT 2215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87950375705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5