BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23310.1
Length=2487
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930357 jgi|Araly1|930357|scaffold_302814.1 2784 0.0
Ahg946955 jgi|Araly1|946955|scaffold_703184.1 1838 0.0
Ahg944626 jgi|Araly1|944626|scaffold_700855.1 196 5e-49
> Ahg930357 jgi|Araly1|930357|scaffold_302814.1
Length=1748
Score = 2784 bits (1507), Expect = 0.0
Identities = 1667/1745 (96%), Gaps = 8/1745 (0%)
Strand=Plus/Plus
Query 483 CGATCGAGTTAAGTGG-AAGCGATGGATACTGCCAGAGCATGGCTGAAG-AAATTAAAGT 540
||||||||||||| || ||||||||||||||||||||||||||||| || || |||||||
Sbjct 1 CGATCGAGTTAAG-GGTAAGCGATGGATACTGCCAGAGCATGGCTG-AGTAAGTTAAAGT 58
Query 541 CTAAAGGGAAA-GAGAAATCTTCGAATAAGAAGGAAACTTCTAGAGGAAATGTTAAGGAG 599
||| | ||||| |||||||| ||||| |||||||||||||||||| | ||||| |||||
Sbjct 59 CTATA-GGAAAGGAGAAATCCTCGAAAAAGAAGGAAACTTCTAGAAGTAATGTGAAGGAA 117
Query 600 GGATCAAAAACAGCTGGAGGTGAAGAAGCTGTGTCTAATGTGACAAAGCAGAAGGCTGCT 659
||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 118 GGATCCAAAACAGTTGGAGGTGAAGAAGCTGTGTCTAATGTAACTAAGCAGAAGGCTGCT 177
Query 660 GCTGCGAAACAGTATATTGAAAATCATTACAAAAAACAAGTTCAAAGTCAGCAGCAAAGA 719
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GCTGCCAAACAGTATATTGAAAATCATTACAAAAAACAAGTTCAAAGTCAGCAGCAAAGA 237
Query 720 AAAGAGCGGCGTGATATGCTGGAAAATAAGTTAGCTGCTGCAGAAGTCTCTGAGGAAGAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAAGAGCGGCGTGATATGCTGGAAAATAAGTTAGCTGCTGCAGAAGTCTCTGAGGAAGAG 297
Query 780 CAAAAGAATCTGCTTAAGGATCTAGAGAAGAAGGAAACTGAATACATGCGCCGTCAGAGA 839
||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 298 CAAAAGAATTTGCTCCAGGATTTAGAGAAGAAGGAAACTGAATACATGCGCCGTCAGAGA 357
Query 840 CATAAAATGGGAACTGATGACTTCGAGCCATTGACAATGATAGGAAAGGGGGCTTTTGGA 899
||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 358 CATAAAATGGGAACTGATGACTTTGAGCCATTAACAATGATAGGAAAGGGCGCTTTTGGA 417
Query 900 GAGGTTAGGATATGTAGGGAGAAGACAACAGGCAATGTCTATGCGATGAAAAAGCTTAAG 959
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 418 GAGGTTAGGATATGTAGGGAGAAGACAACAGGCAATGTCTATGCTATGAAAAAGCTTAAG 477
Query 960 AAATCTGAGATGCTCCGTAGAGGCCAGGTGGAGCATGTGAAAGCAGAGAGAAATTTACTT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AAATCTGAGATGCTCCGTAGAGGCCAGGTGGAGCATGTGAAAGCAGAGAGAAATTTACTT 537
Query 1020 GCAGAGGTTGACAGCAATTGCATTGTGAAGCTGTATTGTTCTTTTCAAGATGAAGAGTAT 1079
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 538 GCAGAGGTTGATAGCAATTGCATTGTGAAGCTGTATTGTTCTTTCCAAGATGAAGAGTAT 597
Query 1080 TTGTATCTTATTATGGAGTATCTACCTGGTGGAGATATGATGACATTACTTATGAGGAAA 1139
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 598 TTGTATCTTATTATGGAGTATCTACCTGGAGGAGATATGATGACATTACTTATGAGGAAA 657
Query 1140 GACACACTTACTGAAGATGAGGCAAGATTTTATGTTGGGGAAACTGTCTTAGCTATCGAG 1199
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GATACACTTACTGAAGATGAGGCAAGATTTTATGTTGGGGAAACTGTCTTAGCTATCGAG 717
Query 1200 TCCATTCATAAGCACAATTATATCCACAGAGATATCAAGCCTGATAATCTGCTACTCGAC 1259
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TCCATTCATAAGCACAACTATATCCACAGAGATATCAAGCCTGATAATCTGCTACTCGAC 777
Query 1260 AGAAGCGGTCACATGAAGTTATCCGATTTTGGATTATGTAAGCCATTAGATTGTAGTATT 1319
||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 778 CGAAGCGGCCACATGAAATTATCAGATTTTGGATTATGTAAGCCATTAGACTGTAGTATT 837
Query 1320 CTCCAGGAAAAAGATTTCGTAGTTGCACACAACCTTAGTGGGGCTCTACAAAGTGATGGC 1379
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 838 CTCCAGGAAAAAGATTTCGTAGTTGCACATAACCTTAGTGGGGCTCTACAAAGTGACGGC 897
Query 1380 CGCCCTGTGGCACCGAGACGTAC-CCGCTCTCAAATGGAACAATTACAAAACTGGCAGAG 1438
|||||||||||| ||||||| || || |||||||||||||||| ||||||||||||||||
Sbjct 898 CGCCCTGTGGCATCGAGACGCACTCC-CTCTCAAATGGAACAACTACAAAACTGGCAGAG 956
Query 1439 AAATAGAAGGATGCTTGCTTATTCTACAGTTGGAACTCCTGACTATATTGCTCCAGAAGT 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AAATAGAAGGATGCTTGCTTATTCTACAGTTGGAACTCCTGACTATATTGCTCCAGAAGT 1016
Query 1499 TTTGTTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCACTTGGTGCGATCATGTA 1558
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1017 TTTGTTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCTCTTGGTGCGATCATGTA 1076
Query 1559 TGAAATGCTTGTGGGGTTTCCACCATTTTATTCAGACGAGCCAATGACAACTTGTAGAAA 1618
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1077 TGAAATGCTTGTGGGGTTTCCACCATTTTATTCAGATGAGCCAATGACAACTTGTAGAAA 1136
Query 1619 GATAGTAAATTGGAAAAATTATTTAAAATTCCCTGATGAGGTTAGGCTATCACCAGAAGC 1678
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1137 GATAGTAAATTGGAGAAATTATTTAAAATTCCCGGATGAGGTTAGGCTATCACTAGAAGC 1196
Query 1679 CAAGGATCTAATTTGTAGACTTTTATGCAACGTAGAACAAAGGATTGGAACAAAAGGAGC 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CAAGGATCTAATTTGTAGACTTTTATGCAACGTAGAACAAAGGATTGGAACAAAAGGAGC 1256
Query 1739 AAATGAAATTAAGGAACACCCTTGGTTCAGTGGTGTCGAATGGGAAAAGTTGTATCAGAT 1798
||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 1257 AAATGAAATTAAGGATCACCCTTGGTTCAGAGGTGTCGAATGGGAAAAATTGTATCAAAT 1316
Query 1799 GAAGGCTGCTTTTATTCCCCAAGTTAATGACGAGCTGGACACCCAAAATTTCGAAAAATT 1858
||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||
Sbjct 1317 GAAGGCTGCGTTTATTCCCAAAGTCAATGACGAGTTGGACACCCAAAATTTCGAAAAATT 1376
Query 1859 CGAAGAGACTGATAAGCAAGTTCCGAAGACGCCAAAATCAGGTCCATGGAGAAAGATGCT 1918
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TGAAGAGACTGACAAGCAAGTTCCGAAGACGCCAAAATCAGGTCCATGGAGAAAGATGCT 1436
Query 1919 CTCATCCAAAGACATAAACTTTGTGGGTTATACTTACAAGAACGTTGAAATCGTAAACCA 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1437 CTCATCCAAAGACATAAACTTTGTGGGTTATACTTACAAGAACGTTGAAATCGTAAATGA 1496
Query 1979 TGATCAATTACCAGGGATAGCTGAGCTGAAGAAGAAGAGCACAAAGCCAAAGCGGCCATC 2038
||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1497 TGATCAATTACCAGGAATAGCTGAGCTAAAGAAGAAGAGCACAAAGCCGAAGCGGCCATC 1556
Query 2039 AATTAAATCCCTCTTTGAGGATGAATCAGCCAGTAGCACCACAAGCCACCAAGGAAGCTT 2098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 AATTAAATCCCTCTTTGAGGATGAATCAGCCAGTAGCACCACAAGCCACCAAGGAAGCTT 1616
Query 2099 TATGAAACTCTTGCCAACACAAATCGAAGTTCCAGAGAAAGAAGACAAATCAAGCTCATC 2158
||||||||||||||| | || || ||||||||||||||||||| |||||| ||||||||
Sbjct 1617 CATGAAACTCTTGCCACCGCAGATAGAAGTTCCAGAGAAAGAAGGCAAATCCAGCTCATC 1676
Query 2159 TAGTGAAACCCTATCATCTTCCACCACACGTTTCGACAATGCCACATCCTAAACCAGACT 2218
|||||||||||||||||| || ||||| || ||||||||||||||| ||| |||||||||
Sbjct 1677 TAGTGAAACCCTATCATCCTCAACCACTCGCTTCGACAATGCCACAGCCTGAACCAGACT 1736
Query 2219 CTTTG 2223
|||||
Sbjct 1737 CTTTG 1741
> Ahg946955 jgi|Araly1|946955|scaffold_703184.1
Length=1696
Score = 1838 bits (995), Expect = 0.0
Identities = 1451/1670 (87%), Gaps = 36/1670 (2%)
Strand=Plus/Plus
Query 504 ATGGATACTGCCAGAGCATGGCTGAAGAAATTAAAGTCTAAAGGGAAAGAGAAATCTTCG 563
||||| ||||||| ||| |||||||| || ||||| ||||||| || | ||||||||||
Sbjct 21 ATGGAGACTGCCAAAGCTTGGCTGAATAAGTTAAAATCTAAAGACAAGGTGAAATCTTCG 80
Query 564 AATAAGAAGGAAACTTCTAGAGGAAATGTTAAGGAGGGATCAAAAACAGCTGGAGGTGAA 623
|| |||||||||||| | | | | ||||| ||||| ||| | ||||||||||||||||||
Sbjct 81 AAAAAGAAGGAAACTAC-A-A-GTAATGTAAAGGAAGGACCGAAAACAGCTGGAGGTGAA 137
Query 624 GAAGCTGTGTCTAATGTGACAAAGCAGAAGGCTGCTGCTGCGAAAC-AGTATATTGAAAA 682
||||| | || ||| | || ||| |||||||||||||||| |||| | |||||||||||
Sbjct 138 GAAGCACTTTCAAATATAACTAAGGAGAAGGCTGCTGCTGCTAAACTA-TATATTGAAAA 196
Query 683 TCATTACAAAAAACAAGTTCAAAGTCAGCAGCAAAGAAAAGAGCGGCGTGATATGCTGGA 742
||||||||||| ||| | || |||| |||| ||||||||||||| || | ||||| ||
Sbjct 197 TCATTACAAAATGCAAATGCAGAGTCTGCAGGAAAGAAAAGAGCGACGCAAAATGCTAGA 256
Query 743 AAATAAGTTAGCTGCTGCAGAAGTCTCTGAGGAAGAGCAAAAGAATC-TGCTTAAGGATC 801
||| || |||||||||||||||||||||||||||||||| || || | |||| ||||||
Sbjct 257 AAAAAAATTAGCTGCTGCAGAAGTCTCTGAGGAAGAGCAGAACAA-CTTGCTAAAGGATT 315
Query 802 TAGAGAAGAAGGAAACTGAATACATGCGCCGTCAGAGACATAAAATGGGAACTGATGACT 861
| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 316 TGGAGATGAAGGAAACTGAATACATGCGCCGTCAGAGACATAAAATGGGAGCTGATGACT 375
Query 862 TCGAGCCATTGACAATGATAGGAAAGGGGGCTTTTGGAGAGGTTAGGATATGTAGGGAGA 921
||||||||||||||||||| || ||||| || || || ||||||||||||||||||||||
Sbjct 376 TCGAGCCATTGACAATGATTGGGAAGGGTGCATTCGGGGAGGTTAGGATATGTAGGGAGA 435
Query 922 AGACAACAGGCAATGTCTATGCGATGAAAAAGCTTAAGAAATCTGAGATGCTCCGTAGAG 981
|| |||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||
Sbjct 436 AGGGAACAGGCAATGTCTATGCAATGAAGAAGCTTAAGAAATCTGAGATGCTTCGCAGAG 495
Query 982 GCCAGGTGGAGCATGTGAAAGCAGAGAGAAATTTACTTGCAGAGGTTGACAGCAATTGCA 1041
|||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 496 GCCAGGTGGAACATGTAAAAGCAGAGAGAAATTTACTTGCAGAAGTTGACAGCAATTGTA 555
Query 1042 TTGTGAAGCTGTATTGTTCTTTTCAAGATGAAGAGTATTTGTATCTTATTATGGAGTATC 1101
|||| || |||||||||||||| |||||||| |||||||||||||| || |||||||||
Sbjct 556 TTGTCAAACTGTATTGTTCTTTCCAAGATGAGGAGTATTTGTATCTCATAATGGAGTATT 615
Query 1102 TACCTGGTGGAGATATGATGACATTACTTATGAGGAAAGACACACTTACTGAAGATGAGG 1161
|||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 616 TACCTGGTGGGGATATGATGACTTTACTTATGAGGAAAGACACCCTTACTGAAGATGAGG 675
Query 1162 CAAGATTTTATGTTGGGGAAACTGTCTTAGCTATCGAGTCCATTCATAAGCACAATTATA 1221
| || |||||| |||||||||||||| | ||||| ||||||||||| |||||||| ||||
Sbjct 676 CCAGGTTTTATATTGGGGAAACTGTCCTGGCTATTGAGTCCATTCACAAGCACAACTATA 735
Query 1222 TCCACAGAGATATCAAGCCTGATAATCTGCTACTCGACAGAAGC-GGTCACATGAAGTTA 1280
|||||||||||||||||||||||||||| ||||| |||| ||| || |||||||| ||
Sbjct 736 TCCACAGAGATATCAAGCCTGATAATCTACTACTTGACA-AAGATGGCCACATGAAATTG 794
Query 1281 TCCGATTTTGGATTATGTAAGCCATTAGATTGTAGTATTCTCCAGGAAAAAGATTTCGTA 1340
|| ||||||||||||||||| ||| |||| ||||||| ||| || || ||||| ||| |
Sbjct 795 TCAGATTTTGGATTATGTAAACCACTAGACTGTAGTAATCTTCAAGAGAAAGACTTCACA 854
Query 1341 GTTGCACACAACC-TTAGTGGGGCTCTACAAAGTGATGGCCGCCCTGTGGC-ACCGAGAC 1398
|||||| | || | ||||||||||| ||||||||||||| ||||||||||| || ||||
Sbjct 855 GTTGCA-AGAAACGTTAGTGGGGCTTTACAAAGTGATGGTCGCCCTGTGGCGACA-AGAC 912
Query 1399 GTACCCGCTCTCAAATGGAACAATTACAAAACTGGCAGAGAAATAGAAGGATGCTTGCTT 1458
| |||| | || | | ||| ||| ||||||||||||||||||||||||||||||||
Sbjct 913 GCACCCAA-C--AA--G-AGCAACTACTAAACTGGCAGAGAAATAGAAGGATGCTTGCTT 966
Query 1459 ATTCTACAGTTGGAACTCCTGACTATATTGCTCCAGAAGTTTTGTTGAAGAAAGG-ATAT 1517
|||| ||||||||||||||||| || ||||| ||||||||| || |||| ||||| ||||
Sbjct 967 ATTCCACAGTTGGAACTCCTGATTACATTGCCCCAGAAGTTCTGCTGAA-AAAGGGATAT 1025
Query 1518 GGCATGGAATGTGATTGGTGGTCACTTGGTGCGATCATGTATGAAATGCTTGTGGGGTTT 1577
|| |||||||||||||||||||| ||||| || || ||||||||||||||||||||||||
Sbjct 1026 GGAATGGAATGTGATTGGTGGTCTCTTGGCGCCATTATGTATGAAATGCTTGTGGGGTTT 1085
Query 1578 CCACCATTTTATTCAGACGAGCCAATGACAACTTGTAGAAAGATAGTAAATTGGAAAAAT 1637
|| |||||||||||||| || ||||||||||||||||| |||||||||||||||| ||||
Sbjct 1086 CCGCCATTTTATTCAGATGATCCAATGACAACTTGTAGGAAGATAGTAAATTGGAGAAAT 1145
Query 1638 TATTTAAAATTCCCTGATGAGGTTAGGCTATCACCAGAAGCCAAGGATCTAATTTGTAGA 1697
|| || |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1146 TACTTGAAATTCCCAGATGAGGTTAGACTATCACCAGAAGCCAAGGATCTTATTTGTAGG 1205
Query 1698 CTTTTATGCAACGTAGAACAAAGGA-TTGGAACAAAAGGAGCAAATGAAATTAAGGAACA 1756
||||||||||| || |||||||| | ||||||||||||||||| |||||||||||| ||
Sbjct 1206 CTTTTATGCAATGTTGAACAAAG-ACTTGGAACAAAAGGAGCAGATGAAATTAAGGGTCA 1264
Query 1757 CCCTTGGTTCAGTGGTGTCGAATGGG-AAAAGTTGTATCAGATGAAGGCTGCTTTTATTC 1815
||| |||||||| ||| |||||||| |||| ||||| || ||||||||||| |||||||
Sbjct 1265 CCCATGGTTCAGAGGTACCGAATGGGGAAAA-TTGTACCAAATGAAGGCTGCCTTTATTC 1323
Query 1816 CCCAAGTTAATGACGAGCTGGACACCCAAAATTTCGAAAAATTCGAAGAGACTGATAAGC 1875
|||| || ||||| ||| | |||||||||||||| || ||||| ||||||||||| ||||
Sbjct 1324 CCCAGGTCAATGATGAGTTAGACACCCAAAATTTTGAGAAATTTGAAGAGACTGACAAGC 1383
Query 1876 AAGTTCCGAAGACG-CCAAAATCAGGTCCATGGAGAAAGATGCTCTCATCCAAAGACATA 1934
||||||| ||| || |||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1384 AAGTTCCAAAGTCGACCAAG-TCAGGTCCATGGAGAAAGATGCTCTCATCCAAGGACATT 1442
Query 1935 AACTTTGTGGGTTATACTTACAAGAACGTTGAAATCGTAAACCATGATCAATTACCAGGG 1994
|||||||| |||||||||||||||||||| ||||||||||| |||| ||| ||||||||
Sbjct 1443 AACTTTGTTGGTTATACTTACAAGAACGTAGAAATCGTAAATGATGACCAAATACCAGGG 1502
Query 1995 ATAGCTGAGCTGAAGAAGAAGAGCACA-AAGCCAAAGCGGCCATCAATTAAATCCCTCTT 2053
||||| ||||||||||||||||||| | |||||||||||||| || ||||||||||||||
Sbjct 1503 ATAGCCGAGCTGAAGAAGAAGAGCA-ATAAGCCAAAGCGGCCGTCGATTAAATCCCTCTT 1561
Query 2054 TGAGGATGAATCAGCCAGTAGCACCA-CAAGCCACCAAGGAAGCTT-TATGAAACTCTTG 2111
||| |||||| || | || | ||| ||| ||||||||||||||| | |||| || ||
Sbjct 1562 TGAAGATGAAACATCTGGTGGG-CCAACAACCCACCAAGGAAGCTTCT-TGAATCTATTA 1619
Query 2112 CCAACACAAATCGAAGTTCCAGAGAAAGAAG--AC-AAATCAAGCTCATC 2158
|| ||||| || |||| |||||||||||||| | ||||| ||||||||
Sbjct 1620 CCGACACAGATTGAAGATCCAGAGAAAGAAGGTAGTAAATCGAGCTCATC 1669
> Ahg944626 jgi|Araly1|944626|scaffold_700855.1
Length=1601
Score = 196 bits (106), Expect = 5e-49
Identities = 306/401 (76%), Gaps = 19/401 (5%)
Strand=Plus/Plus
Query 1460 TTCTACAGTTGGAACTCCTGACTATATTGCTCCAGAAGTTTTGTTGAAGAAAGGATATGG 1519
||| || || ||||| ||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 917 TTCAACTGTGGGAACACCTGACTATATTGCTCCTGAAGTTTTGCTGAAGAAAGGATATGG 976
Query 1520 CATGGAATGTGATTGGTGGTCACTT-GGTGCGATCATGTATGAAATGCTTGTGGGGTTTC 1578
||||||||||||||||||||| || ||||| || ||||| |||||||| || |||| ||
Sbjct 977 CATGGAATGTGATTGGTGGTCG-TTAGGTGCAATTATGTACGAAATGCTCGTTGGGTATC 1035
Query 1579 CACCATTTTATTCAGACGAGCCAATGA-CAACTTGTAGAAAGATAGTAAATTGGAAAAAT 1637
| || |||||| | || || || || | ||||||| |||||||| || |||||| ||||
Sbjct 1036 CTCCTTTTTATGCTGATGACCCTAT-ATCAACTTGCAGAAAGATCGTCCATTGGAGAAAT 1094
Query 1638 TATTTAAAATT-CCCTGATGAGGTTAGGCTATCA-CCAGAAGCCAAGGATCTAATTTGTA 1695
|||| ||||| ||| || || | | | | ||| || || || || ||||| || || |
Sbjct 1095 CATTTGAAATTTCCC-GAGGATGCGAAGTTGTCATCC-GAGGCAAAAGATCTTATCTGCA 1152
Query 1696 GACTTT-TATGCAACGTAGAACAAAGGATTGGAACAA-A--AGGAGCAAATG-AAATTAA 1750
| || | |||||||| || || ||| |||| || | |||||| | | |||| ||
Sbjct 1153 GG-TTGCTGTGCAACGTTGACCATAGGCTTGGCACTGGAGGAGGAGCCCA-GCAAATCAA 1210
Query 1751 GGAACACCCTTGGTTCAGTGG-TGTCGAATGGGAAAAGTTGTATCAGATG-AAGGCTGCT 1808
||| || ||||||||| || ||| | ||||||||| | ||| | ||| ||| ||||
Sbjct 1211 GGATCATTCTTGGTTCAA-GGATGTTGTGTGGGAAAAGCTCTATGAAATGGAAG-CTGCG 1268
Query 1809 TTTATTCCCCAAGTTAATGACGAGCTGGACACCCAAAATTT 1849
|| | || |||| || | |||||| || || ||||||||
Sbjct 1269 TTCAAACCAGAAGTGAACGGCGAGCTAGATACACAAAATTT 1309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93740092945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5