BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G23325.1

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479847 jgi|Araly1|479847|fgenesh2_kg.3__2548__AT3G23325.1         460    3e-129
  Ahg493471 jgi|Araly1|493471|fgenesh2_kg.7__2904__AT4G14342.1         374    4e-103


> Ahg479847 jgi|Araly1|479847|fgenesh2_kg.3__2548__AT3G23325.1
Length=430

 Score =  460 bits (249),  Expect = 3e-129
 Identities = 269/279 (96%), Gaps = 0/279 (0%)
 Strand=Plus/Plus

Query  30   TCTGAAAGATGCAGGCAAGTGATAGGTTTAACATAAATTCTCAGCTTGAGCATCTTCAAG  89
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  17   TCTGAAAGATGCAGGCAAGTGATAGGTTTAACATAAATTCTCAGCTTGAGCATCTTCAAG  76

Query  90   CTAAGTATGTTGGTACAGGTCATGCAGATTTGAGCAGATTTGAATGGACTGTGAACATTC  149
            |||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||
Sbjct  77   CTAAGTATGTTGGTACTGGTCATGCAGATTTAAGCAGATTTGAATGGGCTGTGAACATTC  136

Query  150  AGCGTGATAGTTATGCTTCATACATTGGTCACTACCCGATGCTTTCTTACTTTGCAATAG  209
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  137  AGCGTGATAGCTATGCTTCATACATTGGTCACTACCCGATGCTTTCTTACTTTGCAATCG  196

Query  210  CTGAGAACGAATCTATTGGTCGAGAACGTTACAACTTCATGCAGAAAATGCTCTTACCTT  269
            ||||||||||||| ||||| || ||||| ||||||||||||||||||||||| |||||||
Sbjct  197  CTGAGAACGAATCCATTGGCCGTGAACGCTACAACTTCATGCAGAAAATGCTTTTACCTT  256

Query  270  GCGGCCTTCCTCCAGAAAGAGAAGACGAGTAAGAGCTTG  308
            |||||||||||||||||||||||||||||||||||||||
Sbjct  257  GCGGCCTTCCTCCAGAAAGAGAAGACGAGTAAGAGCTTG  295


> Ahg493471 jgi|Araly1|493471|fgenesh2_kg.7__2904__AT4G14342.1
Length=503

 Score =  374 bits (202),  Expect = 4e-103
 Identities = 266/296 (90%), Gaps = 8/296 (3%)
 Strand=Plus/Plus

Query  4    TTCTTCTTCTTGCGAACTCGCTGAAGTCTG--AAAGATGCAGGCAAGTGATAGGTTTAAC  61
            |||||||||||  |  || || ||| ||||  ||||||||||||||||||||||||||||
Sbjct  47   TTCTTCTTCTT--G--CT-GC-GAACTCTGAAAAAGATGCAGGCAAGTGATAGGTTTAAC  100

Query  62   ATAAATTCTCAGCTTGAGCATCTTCAAGCTAAGTATGTTGGTACAGGTCATGCAGATTTG  121
            || ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct  101  ATCAATTCTCAGCTTGAGCATCTTCAAGCTAAATATGTTGGTACAGGGCATGCTGATTTG  160

Query  122  AGCAGATTTGAATGGACTGTGAACATTCAGCGTGATAGTTATGCTTCATACATTGGTCAC  181
            || |||||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  161  AGTAGATTTGAGTGGGCTATGAACATTCAGCGTGATAGTTATGCTTCATACATTGGTCAC  220

Query  182  TACCCGATGCTTTCTTACTTTGCAATAGCTGAGAACGAATCTATTGGTCGAGAACGTTAC  241
            ||||| |||||||| ||||||||||| || |||||||| ||||| || || ||||| |||
Sbjct  221  TACCCTATGCTTTCATACTTTGCAATTGCGGAGAACGAGTCTATCGGACGCGAACGCTAC  280

Query  242  AACTTCATGCAGAAAATGCTCTTACCTTGCGGCCTTCCTCCAGAAAGAGAAGACGA  297
            || ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct  281  AATTTCATGCAGAAAATGCTATTACCCTGCGGCCTTCCTCCGGAAAGAGAAGACGA  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18429149487


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5