BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23350.1
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905388 jgi|Araly1|905388|Al_scaffold_0003_2516 1031 0.0
> Ahg905388 jgi|Araly1|905388|Al_scaffold_0003_2516
Length=816
Score = 1031 bits (558), Expect = 0.0
Identities = 758/849 (89%), Gaps = 36/849 (4%)
Strand=Plus/Plus
Query 1 ATGGGGACACTTTGGTTTGGAGATTTCAAGAAACAAGCCTCTTCGTTTATTCAAGACAAG 60
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGACACTTTGGTTTGGAGAAATCAGGAAACAAGCCTCTTCGTTTATTCAAGACAAG 60
Query 61 TACAATGTTGCTAGACTTGTCCTCACCGATGTTACCGAAGCTGAGTTGTTAGTAGAAGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 TACAATGTTGCTAGACTTGTCCTCACCGATGTTACCGAAGCTGAGTTGTTAGTTGAAGAG 120
Query 121 GTAACAAATGGTGATCCTTCTTCACCAGACGCTAAAACGATGACGAAAATAGCCGAGGCA 180
|| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 GTGACAAATGATGATCCTTCTTCACCAGACGCTAAAACGGTGACGAAAATAGCCGAGGCA 180
Query 181 TCGTTTGATACCGTGGAGTATTGGAGAATTGTGGATGTTCTTCATAGAAAGATTGGGAAA 240
||||||||||| ||||| |||||||||||||| | | || | ||| ||| ||
Sbjct 181 TCGTTTGATACTGTGGACTATTGGAGAATTGT-G--G------AT-G-AAG---GGG-AA 225
Query 241 GATGAAAGAGAGATAAAGAATTGGAGAGAAGCGTACAAGGCAATGGTGTTGTTGGAGTTC 300
|| || || ||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 226 -AT----GA-AG---AAG---TGGAGAGAAGCGTACAAAGCAATGGTGTTGTTGGAGTTT 273
Query 301 TTACTAATGCATGGACCTATTCATTTACCTCATGATTTTCTTTATGATTTGGATCATTTT 360
||||||| ||||| ||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 274 TTACTAACACATGGTCCTCTTCATTTGCCTCATGATTTTCTTTATGACTTGGATCATTTT 333
Query 361 CGATTCCTCTCCACTTTCCAATACGTTGACAATAATGGGTTTGATTGGGGAGCTCAAGTT 420
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 334 CGATTCCTCTCTACTTTCCAATACGTTGACGATAATGGGTTTGATTGGGGAGCTCAAGTT 393
Query 421 CaaaaaaaGGCAGATCAAATTCAAACACTTCTATTAGGGAAAGAAGAATTAAGAGAAGCT 480
|| ||||||||||| ||||| ||||| ||||| ||||| |||||||||||||||||||||
Sbjct 394 CAGAAAAAGGCAGAGCAAATACAAACTCTTCTTTTAGGAAAAGAAGAATTAAGAGAAGCT 453
Query 481 CGTCTTAAAGCTCTCAAAATCACTTCCCAAATCAATGGCTTTGGTAACTCCACCACATTT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 CGTCTTAAAGCTCTCAAAATCACTTCCCAAATCAATGGCTTTGGTAACTCCACCACATTC 513
Query 541 TCTCCTTCTCCTAATTCTCTATCTAACTCCTTCTCTTCCTTGAAAACCTCCAATTCAACA 600
|||||||||||| | | | |||||||||||||||| |||| ||||||||||||||||||
Sbjct 514 TCTCCTTCTCCT--TCCCC-ATCTAACTCCTTCTCTCCCTTAAAAACCTCCAATTCAACA 570
Query 601 CCAACCAAAAGAATTGATCTTATATCCGAGTCATATTCGTTAATCGAC-GACGAAAACAA 659
||||||||||||| ||| ||||||||| || |||| ||||||||| | |||||||||
Sbjct 571 CCAACCAAAAGAAACAATCCTATATCCGAATCCGATTCATTAATCGACTG-CGAAAACAA 629
Query 660 GCTCTCGGAGAAGGATC-AAGCCAGCAAAGAGACGCTAGTCAGCGGAATCTGCACAAAAC 718
|||| |||||||||||| || || | ||||||||||| |||||||||||||| | ||||
Sbjct 630 GCTCACGGAGAAGGATCGAA-CCGGTGAAGAGACGCTAATCAGCGGAATCTGCTCCAAAC 688
Query 719 TCGCCGGATTTAGCCCTTTGAACAAGTTTCAA-GGCGGTCGTACTAAGGCGGCAAAATTT 777
||||||||||||| |||||||| || ||| || || |||||||| | |||||||||||||
Sbjct 689 TCGCCGGATTTAGTCCTTTGAAGAAATTT-AACGGTGGTCGTACCACGGCGGCAAAATTT 747
Query 778 CAAACTTTGTCTAACGTTGAGAGAGTTTCAAGTAAATGTTACGATCGTTGCAATTCTATT 837
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 748 CAAACTTTGTCGAACGTTGAGAGAGTTTCAAGTAAATGTTACGATCGTCGCAATTCTATT 807
Query 838 GGTTACTAA 846
|| ||||||
Sbjct 808 GGCTACTAA 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31298914857
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5