BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23360.1
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342480 jgi|Araly1|342480|fgenesh1_pg.C_scaffold_3002243 1094 0.0
> Ahg342480 jgi|Araly1|342480|fgenesh1_pg.C_scaffold_3002243
Length=786
Score = 1094 bits (592), Expect = 0.0
Identities = 726/790 (92%), Gaps = 11/790 (1%)
Strand=Plus/Plus
Query 1 ATGGGCTTCTTAGATCTCCCTTTCATGCTCAAGGCGTTCCGGTTTAGAAGACTTGTAGTT 60
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1 ATGGGCTTCTTAGATCTCCCTTTCATGCTCAAGGCGTTCCAATTTAGACGACTTGTAGTT 60
Query 61 GAAGATGGGAA-GAGAAGGAAGAAGAAGAAACCATTATGGTTAACTCCGGTTTCTCATGG 119
|| ||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 61 GAGGAT-GGAAGGAGAAGGAAGAAGAATAAACCATCATGGTTAACTCCGGTTTCTCATGG 119
Query 120 ATACTATACGGTTGACCGGTTAAGCTATGCCGACAATTCATCGAATGATGATTCGGTTTT 179
|| |||||| ||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 120 ATTCTATACCGTTGACCGGTTAAGCAATATCGACAATTCATCGAATGATGATTCGGTTTT 179
Query 180 TGTTCAGAGAGAGCAACAAAGTGATGAGCTTGAGATTTGGTTATTTGGAGTCTC-AAATG 238
||| || ||||||||||| ||||| ||||||||||||||||| |||||||| || ||| |
Sbjct 180 TGTACAAAGAGAGCAACACAGTGAAGAGCTTGAGATTTGGTTCTTTGGAGTTTCGAAA-G 238
Query 239 CTGGAACAGGGAAAGAGATTGTCAAATATATGCAAAACCATCTATTTGATAAGCTCCCCA 298
||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 CTGAAAGAGGGAAAGAGATTGTCAAATATATGCAAAACCATCTCTTTGATAAGCTCCCCA 298
Query 299 ATGAGCTCGGGATTATGAGAAAGTGTAAAGAGACTATGAGAAGAGCGTACGTTGAGGAAG 358
|||||||||| ||||||||||||||||||||||| |||||| |||||||||| |||||||
Sbjct 299 ATGAGCTCGGAATTATGAGAAAGTGTAAAGAGACAATGAGAGGAGCGTACGTGGAGGAAG 358
Query 359 AGAGAACCGGTGGCTCAGCCGCTTCGGTTATGGTGGTGAACGGAGAGAAGCTAGCTATAG 418
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 359 AGAGAACCGGTGGCTCAGCCGCTTCGGTTATGGTGGTGAACGGAGAAAAGCTAGCCATGG 418
Query 419 CGAGTATTGGGGACCATAGAGTAGTGGTTTGCAAAGATGGTGAGGCTCATCAAATCAGAG 478
||||||| |||| |||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct 419 CGAGTATCGGGGGCCATAGAGTAGTGGTTTGCAGAGACGGCGAGGCTCATCAAATCAGAG 478
Query 479 ATAGGAAAGCCT-CAA----CAAAACATTGGTCACAATTTATTTTCCCTGTTTGTAATCA 533
||| ||| ||| || |||||||||||||||||||||||||||| |||||||||||
Sbjct 479 ATA--AAAACCTGAAATCCTCAAAACATTGGTCACAATTTATTTTCCCAGTTTGTAATCA 536
Query 534 AGGAGAAGAAGAAGATGAATCAGATCCAAGAAATTCAGAGCTTGTAGTGATTACAGAAAA 593
|| ||| ||||||||||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 537 AGAAGATTTAGAAGATGAATCAGATCAAAGAAATTCAGAACTTGTAGTGATTACAGAGAA 596
Query 594 GATTAATTCAGATACAGAATTTATCATTATCGGTAGCCCCGGGATTTGGGAGGTGATGAA 653
||||||| |||||||||| |||||||||||||||||| | || ||||||||||| |||||
Sbjct 597 GATTAATACAGATACAGAGTTTATCATTATCGGTAGCTCTGGAATTTGGGAGGTTATGAA 656
Query 654 GAGTCAAGAAGCGATTAACCTAATAAGACACATAGAGGATCCTAAAGAAGCTGCAAAATG 713
|| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 657 GAATCAAGAAGCGATTAATCTAATCAGACACATAGAAGATCCTAAAGAAGCTGCAAAATG 716
Query 714 TTTAGCTAAAGAAGCTTTAAACAGGATTAGCAAAAGCAGCATTTCTTGCGTTGTAATTCG 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTTAGCTAAAGAAGCTTTAAACAGGATTAGCAAAAGCAGCATTTCTTGCGTTGTAATTCG 776
Query 774 GTTTGGCTAA 783
||||| ||||
Sbjct 777 GTTTGACTAA 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28897171086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5