BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23370.1
Length=2537
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479852 jgi|Araly1|479852|fgenesh2_kg.3__2553__AT3G23370.1 2940 0.0
Ahg916391 jgi|Araly1|916391|Al_scaffold_0008_1142 134 4e-30
> Ahg479852 jgi|Araly1|479852|fgenesh2_kg.3__2553__AT3G23370.1
Length=2455
Score = 2940 bits (1592), Expect = 0.0
Identities = 1927/2089 (92%), Gaps = 22/2089 (1%)
Strand=Plus/Plus
Query 455 TGTATCACTTCGAGTATAAAAGAAGAATCTTTTGTCTCGGAAATGGGATCTCAAGATGCA 514
||| || |||| |||||||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 380 TGTGTCTCTTCTAGTATAAAAGAAGAATCTCCAGTCTCTGAAATGGGATCTGAAGATGCA 439
Query 515 TCTCAAAGTGTTGCTGTAGAAAACAAGAACTGTATCTCTTCTAGTA-TAAAAGAAGAATC 573
|||||||||||||||| |||||||||||| |||||| |||| || | |||||||||||||
Sbjct 440 TCTCAAAGTGTTGCTGCAGAAAACAAGAATTGTATCACTTCGAG-AGTAAAAGAAGAATC 498
Query 574 TTCAGTCTCTGAAATGGGATCTCAAGATGCATCTCAAAGTGTTGCAGGAATTGAGGCTTG 633
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 499 GCCAGTCTCTGAAATGGGATCTCAAGATGTATCTCAAAGTGTTGCAGGAATTGAGACTCC 558
Query 634 TGGGAAGAGAGAAAGCATAACTGTAAGTAATGACAGATTAGGTAATATTAATAGGTTAGA 693
|| |||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct 559 TGAGAAGAGAGAAAGCATATTTGTAAGTAATGAGAGATTAGATAATATTAATAGGTTAGA 618
Query 694 TGGCTTGGAGTCTGGGCAGGGGAAGGTGTTGAGATCAATACGCACTGAAAGGGTGGATCC 753
| ||||||||| ||| |||| ||||||||||||||| |||||||||||||| | ||||||
Sbjct 619 TAGCTTGGAGTTTGGACAGGAGAAGGTGTTGAGATCGATACGCACTGAAAGAGCGGATCC 678
Query 754 TTCTGAGGAACAAAGTTCTAAAGATGTCACT-TTAGGTTTCTTGACTGAAGAAGTATCGG 812
||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 679 TTCCGAGGAACAAAGTTCTAAAGATGTC-GTGTTAGGTTTCTTGACTGAAGAAGTATCGG 737
Query 813 AAAGTCAGACATCATCTAGGAAAAATATGGGGAAGTTGCAGCCTGCGAAAGGGCTATTCG 872
||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct 738 AAAGTCAGACATCATCTGGGGAAAATATAGGGAAGTTGCAGCCTGCGAAAGGGCTATTCG 797
Query 873 ATAAAGTGAAGCCACCTCAAAATAGTCTCTCGAAGTTGTTTGTAAACTCGGATCCATATA 932
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 798 ATAAAGCGAAGCCACCTCAGAATAGTCTCTCGAAGTTGTTTGTAAACTCGGATCCATTTA 857
Query 933 AAGAGGTTAAGCATCCTCTGAGATTTGAGACTTTGAGTAACAGTAATTCCAGTATGTCTA 992
|||| ||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||
Sbjct 858 AAGAAGTTAAGCTTCCTCTGAAATTTGAGGCTTTGAGTAACAGTGATTCCAGTATGTCTA 917
Query 993 CTGGAGAATCCTGTAGTGATGCAGG-TGATCAACACAGCCTATTTGGTAAGATGCTGTCT 1051
|||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||
Sbjct 918 CTGGAGAATCCTGTAGTGATGC-GGATGATCAACACGGCCTATTTGGTAAGATGCTGTCT 976
Query 1052 GATCCTGTCCAGGAAATTAAAAGTATCCCCAACGAAAATGATGAGCACAGGTTGTCGGAT 1111
||||||| |||| ||||||||||||| |||| ||||||||| |||||||||||||||||
Sbjct 977 GATCCTGGCCAGAAAATTAAAAGTATTTCCAAGGAAAATGATAAGCACAGGTTGTCGGAT 1036
Query 1112 GCTCCTCAAAATCTCAG-CTCTTTGACATCCGTTCTATTAAGGGATTGGATTGATGAACA 1170
| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1037 GTTCCTCAAAATCTC-GACTCTTTGACATCCGTTCTATTAAGGGATTGGATTGATGATCA 1095
Query 1171 GAGGAGTGAAGACCTGGCTGCTATTAGAGAAAGGAAAAGTATATTTTCGCTTGAAAGTTC 1230
|| ||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1096 GAAGAGTGGAGACCTGGCTGCGATTAGAGAAAGGAAAAGTATTTTTTCGCTTGAAAGTTC 1155
Query 1231 TAGAAACACTGTTGCACCTATGGCAGTGGGTACTATGAAGAAGTTGATGGACTCCCTTAA 1290
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1156 TAGAAACACTGTTGCACCTATGGCAGTGGGTAGTATGAAGAAGTTGATGGACTCCCTTAA 1215
Query 1291 CTTTCCAACTGACAATGGCACAGATGCAGAAGCCAACTCGTTGAATTCTAATAGTAGAGA 1350
| | |||||||||||||||| || ||||||||||||||||||||| ||| |||||| ||
Sbjct 1216 CCTCCCAACTGACAATGGCATGGACGCAGAAGCCAACTCGTTGAATGCTAGTAGTAGTGA 1275
Query 1351 AGAGAAATGGATATCCGAAGGCAATTCTGCAATGCAAAACAGTGATCGTTTTTGTGCGAT 1410
||| |||| |||||| || ||||||||||| | ||||| |||||| ||||||||||||
Sbjct 1276 AGAAAAATCTATATCCAAAAGCAATTCTGCATTTCAAAAAAGTGATGGTTTTTGTGCGAC 1335
Query 1411 AGAGGAAGAAGAACCCCAAGGGGAAACTTTTGTAATGGAAACCCAATCATTGTGCAGTCA 1470
||||||||||||| || |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1336 AGAGGAAGAAGAATCCAAAGGGGAAACTTTTGTAATGGAAAACCAATCATTGTTCAGTCA 1395
Query 1471 GGACACTTTGGAC-GCTACCACCGTGAATCCTAAGGTAACAAAAAAGAGTTTCTTGGCAT 1529
|| | |||||| | |||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct 1396 GGCCGCTTTGG-CAGCTACCACCGCGAATCCTAAGGTAACAAAAAAGAGTTTGTTCGCAT 1454
Query 1530 TATCTGCTGGAGAACACTCTCCTAACAAAGTACTGCTAAGGTTTTTGCCAGAATCATCT- 1588
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1455 TATCTGCTGGAGAGCACTCTCCTAACAAAGTACTGCTAAGGTTTTTGCAAGAATCATGTC 1514
Query 1589 ATGAAGAAACACATTGTTAAAGCGTTTTCTTCTCAGTTTGGAGCCGTTTTGCATGTACAA 1648
| |||||||||||| ||| || || || |||||||||||||||||||||| ||||||||
Sbjct 1515 A-GAAGAAACACATCGTTGAA--GTGTT-TTCTCAGTTTGGAGCCGTTTTGGATGTACAA 1570
Query 1649 GAAATTCCCTCTATTGAAGGGTGCATTTACAAAGATGCTCTCTTAACTTTTGAGACTAAC 1708
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1571 GAAATTCCCTCTTTTGAAGGGTGCATTTACAAAGATGCTCTCTTAACTTTTGAGACTAAC 1630
Query 1709 ACTGCAGTCAAGAAAGCTCTCAAGAAAGGCCA-TGTGACGGTGATGAATTACAATACAGT 1767
|||||||||||||| ||||| ||||||| | ||||||||||||||| ||||| ||||
Sbjct 1631 ACTGCAGTCAAGAAGGCTCTTGAGAAAGG-TAGAGTGACGGTGATGAATAACAATGCAGT 1689
Query 1768 TGTCGAGGCAACTTCTCAGGAAGACATGGTAGAAAGGATTTGCATTCCGGATCTCATTGG 1827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 TGTCGAGGCAACTTCTCAGGAAGACATGGTAGAAAGGATTTGCATTCCGGATCTCATTGG 1749
Query 1828 CGATCCAGATGTGCCTGTTGCATTGGTGAAGGAACCAGCCCGAACAGTTAAGATTCATCC 1887
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1750 CGATCCAGATGTGCCTATTGCATTGGTGAAGGAACCATCCCGAACAGTTAAGATTCATCC 1809
Query 1888 ACTGACGCACGATTTTAGTTCAAATCAGATCAAAGAAGCGCTAAAGTTCTGTAGGAGCAA 1947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1810 ACTGACGCACGATTTTAGTTCAAATCAGATCAAAGAAGCGCTAAAGTTCTGTAGGAGCAA 1869
Query 1948 CATATCTAAGTTTACCTTGGGTTCATCGAGAACAGATGCTTTCGTGGAGTTTGAGACGGA 2007
||||||||| | | |||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1870 CATATCTAAAATCATCTTGGGTTTATCGAGAACAGATGCTTTCGTGGAGTTTGAGACAGA 1929
Query 2008 AGACGGCAAAGAGAGAGCACTTGCGGAGCATTCAATCAGCATATGCAACACACAATTGTT 2067
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1930 AGACGGCAAAGAGAGAGCACTTGCAGAGCATTCAATCAGCATATGCAATACACAATTGTT 1989
Query 2068 TATCTCGAGGATTGATATACCGAGGACAATCGTGGCAAGGATTTCAAACTTGTCGAAATC 2127
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1990 TATCTCTAGGATTGATATACCGAGGACAACCGTGGCAAGGATTTCAAACTTGTCGAAATC 2049
Query 2128 AGCAATGAGAGATGTACGAGCATTGTGTGTACCTTATGGACAGATCAGAGGGGTGTATAT 2187
|||||||| |||| ||||||| |||||||||||||||||||| |||| | ||| |||||
Sbjct 2050 AGCAATGAAAGATTTACGAGCTTTGTGTGTACCTTATGGACAAATCAAACAGGTATATAT 2109
Query 2188 CAGGGGAA-CTGGTGTTGCGGATGTGTTTTTCGATATCTCTGAGTGGCCAAACATGCTCG 2246
|||||||| | ||||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct 2110 CAGGGGAAAC-GGTGTTGTAGATGTGCTTTTCGATGTCTCTGAGTGGCCAAACATGCTCA 2168
Query 2247 CCATTCTCAACAGCATGAATGGTATGGAGATAGATGGTAAGAAGTTGGTGGTTCGACCTG 2306
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2169 ACATTCTCAACAGCTTGAATGGTATGGAGATAGATGGTAAGAAGTTGGTGGTTCGACCTG 2228
Query 2307 CAACAACAGTAATACCTCCTGAAATATTGAGGGTTTTGTGGAAAGATCCTCGAGAAAAGA 2366
||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||
Sbjct 2229 CAACAACAGTAATACCTCCTGTAATTTTGAGGGTATTGTGGAAAGATCCTCAAGAAAAGA 2288
Query 2367 GATATGTGAAAAGTGTAATTCAGAATCTGGTGAGAGAGATTGAGCAGCCTTTAGATGCAA 2426
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2289 GATATGTGAAAAGTGTAATTCACAATCTGGTGAGAGAGATTGAGCAGCCTTTAGATGCAA 2348
Query 2427 CTCGTTGCCACACACTTATAACAGAATTACTACTATAGCTTCATGTACTCTTTAACTCAT 2486
|||||||||||||||| || ||||| |||||| ||||||||||| || |||||||||| |
Sbjct 2349 CTCGTTGCCACACACTCATGACAGATTTACTAGTATAGCTTCATATATTCTTTAACTC-T 2407
Query 2487 T-AGAGCCTAGAGCCATTGTTTTTGTAAAACGAATCAAAAGAGAGAATT 2534
| | || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 2408 TCA-AGATTAGAGCCATTATTTTTGTAAAACGAATCAAAAGAGAGAATT 2455
Score = 617 bits (334), Expect = 9e-176
Identities = 479/546 (88%), Gaps = 21/546 (4%)
Strand=Plus/Plus
Query 1 AAGGGTTTTTGAGGAAAGTTTCTCGAAAATGGCCATTGCTCGTTTACTTTCACCCAAATC 60
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AAGGGTTTTTGAGGAAAGCTTCTCGACAATGGCCATTGCTCGTTTACTTTCACCCAAATT 60
Query 61 AACTCCTCAATTCAACAATAGAGGTTTTGTAATTTTGACGAGGAGGTGGTTATCTTCTTC 120
||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 61 AACTCCTCATTTCAACAATAGAGGTTTTGTACCTTTGACGCGGAGGTGGTTATCTTCTTC 120
Query 121 TCTTGAGGATGGTCGGAAATGTGAGAGATTGTCAGATTCTGAAGCTTCCACGAACAAAGA 180
| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 121 TATTGAGGATGGTCGGAAATATGAGAGATTGCCAGATTCTGAAGCTTCCACGAACAAAGA 180
Query 181 TATTGGACAAAAGGTAGTGCATTGGTATTCTTTGGGAGGTTTAATTAGTAATCTAAAGCA 240
|||||| ||||||| ||||| |||||||||||||||||||||| | | |||||| |||||
Sbjct 181 TATTGGCCAAAAGGGAGTGCGTTGGTATTCTTTGGGAGGTTTACTGACTAATCTTAAGCA 240
Query 241 AAAGATTATGGGAAACGTAATTTTGATGGACAAAAGTTCTGGTGAAGACTCGGTTTTGCC 300
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 AAAGATTATGGGAAACGTGATTTTGATGGACAAAAGTTCTGGTGAAGACTCGGTTTCGCC 300
Query 301 AAAATCGCCAATGGTTTCCTCATCAGATGTGGCTGTTACGAAAGTGGTGACCTTGAAGAA 360
|||||| || | || || |||||||||||| ||| ||| ||||| || |||||| ||||
Sbjct 301 AAAATCACCCGTAGTATCTTCATCAGATGTGACTGCTACTAAAGTTGTCACCTTGCAGAA 360
Query 361 CGTTGCAGAAAGCGAAAACTGTATC-CATTCGAGTGTAAAAGAAGAA-----A-T-T--G 410
|| |||||||||||||| ||| || | ||| ||| ||||||||||| | | | |
Sbjct 361 TGTGGCAGAAAGCGAAAAATGTGTCTC-TTCTAGTATAAAAGAAGAATCTCCAGTCTCTG 419
Query 411 ----G--ATCTGAAGATGCATCTCAAAGTGTTGCTGCGGATAATAAGA-TCTGTATCACT 463
| |||||||||||||||||||||||||||||| || || |||| | |||||||||
Sbjct 420 AAATGGGATCTGAAGATGCATCTCAAAGTGTTGCTGCAGAAAACAAGAAT-TGTATCACT 478
Query 464 TCGAGTA-TAAAAGAAGAATCTTTTGTCTCGGAAATGGGATCTCAAGATGCATCTCAAAG 522
||||| | ||||||||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct 479 TCGAG-AGTAAAAGAAGAATCGCCAGTCTCTGAAATGGGATCTCAAGATGTATCTCAAAG 537
Query 523 TGTTGC 528
||||||
Sbjct 538 TGTTGC 543
> Ahg916391 jgi|Araly1|916391|Al_scaffold_0008_1142
Length=333
Score = 134 bits (72), Expect = 4e-30
Identities = 88/96 (92%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 82 AGGTTTTGTAATTTTGACGAGGAGGTGGTTATCTTCTTCTCTTGAGGATGGTCGGAAATG 141
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 36 AGGTTTTGTACCTTTGACGAGGAGGTGGTTATCTTCTTCTCTTGAGGATGGTCGGAAATA 95
Query 142 TGAGAGATTGTCAGATTCTGAAGCTTCCACGAACAA 177
|||||||||| || |||| || |||||||||||||
Sbjct 96 TGAGAGATTGCCAAATTCCAAAACTTCCACGAACAA 131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95644605195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5