BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G23380.1 Length=582 Score E Sequences producing significant alignments: (Bits) Value Ahg319056 jgi|Araly1|319056|fgenesh1_pm.C_scaffold_3002072 717 0.0 > Ahg319056 jgi|Araly1|319056|fgenesh1_pm.C_scaffold_3002072 Length=597 Score = 717 bits (388), Expect = 0.0 Identities = 537/604 (89%), Gaps = 29/604 (5%) Strand=Plus/Plus Query 1 ATGACCTCACCTATGAAGGGTCTATTAAAAGGTTTGAGGTACATTGCTCGTATCTTCGAG 60 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATGACCTCACCAATGAAGGGTCTATTAAAAGGGTTGAGGTACATTGCTCGTATCTTCGAG 60 Query 61 GATGAGAAGGAACCAGAGATGCAGATTGGAATACCAACCGATGTCAAACATGTTGCTCAT 120 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 61 GATGAGAAGGAACCAGAGATGCAGATTGGAATACCGACCGATGTAAAACATGTTGCTCAT 120 Query 121 ATAGGATGGGAAGGGCCCTCAGCTACCACCCCAAGCTGGATGCATGATTTCAAGCCT-AC 179 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || | Sbjct 121 ATAGGATGGGAAGGGCCCTCTGCTACAACCCCAAGCTGGATGCATGATTTCAAGTCTCAA 180 Query 180 CGATCAAACGAAGACTGAGACGAAAGG-AA-CATCTAACAAAAAACCTGGGAGTTCCGGG 237 |||| || ||||||||||| ||||| || | |||||||| |||||||||||||||||| Sbjct 181 -GATCGTACAAAGACTGAGAC-AAAGGGAAGC-TCTAACAAGAAACCTGGGAGTTCCGGG 237 Query 238 GAGAAACATAGGAA---GGGAAGACGTAAAACATCAACAGGAAACAACTCACCTA-CAGA 293 ||||| |||||||| |||||| ||||||||||| ||||||||||||||||| | |||| Sbjct 238 GAGAAGCATAGGAACAAGGGAAGGCGTAAAACATCCACAGGAAACAACTCACC-AGCAGA 296 Query 294 ATCTCCATCAAGGGTAGGAGGATCAGTAAGGCCATCAAAACGCAACACGGGGAAACAAAG 353 ||||||||||||||||||||||||||| |||| ||||| ||||| |||||| ||||| || Sbjct 297 ATCTCCATCAAGGGTAGGAGGATCAGTGAGGCAATCAAGACGCAGCACGGGCAAACAGAG 356 Query 354 AGAGCAGAACACGGGTTCAGGGTCAGAGTCAGGTTCAGGATTAGAGTTACCTCAACAGAC 413 ||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| Sbjct 357 AGAACAGAACACGGGTTCGGGGTCAGAGTCAGGGTCAGGGTTAGAGTTACCTCAACAGAC 416 Query 414 TGATCAGTTTGTTGTACCAAAACAATCAA-AGCa-aaaaaaGTCAAAAGGATCAGCAACA 471 ||| |||| ||||| ||||||||| |||| | || |||||| ||||||||||||||| || Sbjct 417 TGAACAGTCTGTTGGACCAAAACACTCAAGA-CAGAAAAAA-TCAAAAGGATCAGCAGCA 474 Query 472 GGAGGAGGCG-A--A---------CCTCCTCCATCTAATGAACCATC-AAACAAGAAAGA 518 |||||||| | | | ||||||||| ||| ||||| || ||| | |||||| Sbjct 475 GGAGGAGGAGGAGGAGGAGGAGAACCTCCTCCAGCTATTGAAC-ATGTAAAGACGAAAGA 533 Query 519 AACAGATATATCTGTGAGAGCGGTTTACCCTTGTGCGGGTCTTGGAAGTTCTACAGGAAG 578 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 534 AACAGATATATCCGTGAGAGCGGTATACCCTTGTGCGGGTCTTGGAAGTTCTACAGGAAG 593 Query 579 ATGA 582 |||| Sbjct 594 ATGA 597 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21290818662 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5