BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23380.1
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319056 jgi|Araly1|319056|fgenesh1_pm.C_scaffold_3002072 717 0.0
> Ahg319056 jgi|Araly1|319056|fgenesh1_pm.C_scaffold_3002072
Length=597
Score = 717 bits (388), Expect = 0.0
Identities = 537/604 (89%), Gaps = 29/604 (5%)
Strand=Plus/Plus
Query 1 ATGACCTCACCTATGAAGGGTCTATTAAAAGGTTTGAGGTACATTGCTCGTATCTTCGAG 60
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGACCTCACCAATGAAGGGTCTATTAAAAGGGTTGAGGTACATTGCTCGTATCTTCGAG 60
Query 61 GATGAGAAGGAACCAGAGATGCAGATTGGAATACCAACCGATGTCAAACATGTTGCTCAT 120
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 61 GATGAGAAGGAACCAGAGATGCAGATTGGAATACCGACCGATGTAAAACATGTTGCTCAT 120
Query 121 ATAGGATGGGAAGGGCCCTCAGCTACCACCCCAAGCTGGATGCATGATTTCAAGCCT-AC 179
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || |
Sbjct 121 ATAGGATGGGAAGGGCCCTCTGCTACAACCCCAAGCTGGATGCATGATTTCAAGTCTCAA 180
Query 180 CGATCAAACGAAGACTGAGACGAAAGG-AA-CATCTAACAAAAAACCTGGGAGTTCCGGG 237
|||| || ||||||||||| ||||| || | |||||||| ||||||||||||||||||
Sbjct 181 -GATCGTACAAAGACTGAGAC-AAAGGGAAGC-TCTAACAAGAAACCTGGGAGTTCCGGG 237
Query 238 GAGAAACATAGGAA---GGGAAGACGTAAAACATCAACAGGAAACAACTCACCTA-CAGA 293
||||| |||||||| |||||| ||||||||||| ||||||||||||||||| | ||||
Sbjct 238 GAGAAGCATAGGAACAAGGGAAGGCGTAAAACATCCACAGGAAACAACTCACC-AGCAGA 296
Query 294 ATCTCCATCAAGGGTAGGAGGATCAGTAAGGCCATCAAAACGCAACACGGGGAAACAAAG 353
||||||||||||||||||||||||||| |||| ||||| ||||| |||||| ||||| ||
Sbjct 297 ATCTCCATCAAGGGTAGGAGGATCAGTGAGGCAATCAAGACGCAGCACGGGCAAACAGAG 356
Query 354 AGAGCAGAACACGGGTTCAGGGTCAGAGTCAGGTTCAGGATTAGAGTTACCTCAACAGAC 413
||| |||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 357 AGAACAGAACACGGGTTCGGGGTCAGAGTCAGGGTCAGGGTTAGAGTTACCTCAACAGAC 416
Query 414 TGATCAGTTTGTTGTACCAAAACAATCAA-AGCa-aaaaaaGTCAAAAGGATCAGCAACA 471
||| |||| ||||| ||||||||| |||| | || |||||| ||||||||||||||| ||
Sbjct 417 TGAACAGTCTGTTGGACCAAAACACTCAAGA-CAGAAAAAA-TCAAAAGGATCAGCAGCA 474
Query 472 GGAGGAGGCG-A--A---------CCTCCTCCATCTAATGAACCATC-AAACAAGAAAGA 518
|||||||| | | | ||||||||| ||| ||||| || ||| | ||||||
Sbjct 475 GGAGGAGGAGGAGGAGGAGGAGAACCTCCTCCAGCTATTGAAC-ATGTAAAGACGAAAGA 533
Query 519 AACAGATATATCTGTGAGAGCGGTTTACCCTTGTGCGGGTCTTGGAAGTTCTACAGGAAG 578
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 534 AACAGATATATCCGTGAGAGCGGTATACCCTTGTGCGGGTCTTGGAAGTTCTACAGGAAG 593
Query 579 ATGA 582
||||
Sbjct 594 ATGA 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21290818662
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5