BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23390.1
Length=541
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479854 jgi|Araly1|479854|fgenesh2_kg.3__2555__AT3G23390.1 833 0.0
Ahg946959 jgi|Araly1|946959|scaffold_703188.1 429 1e-119
> Ahg479854 jgi|Araly1|479854|fgenesh2_kg.3__2555__AT3G23390.1
Length=530
Score = 833 bits (451), Expect = 0.0
Identities = 504/530 (95%), Gaps = 1/530 (0%)
Strand=Plus/Plus
Query 1 CGTCTAGTGGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGGT 60
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1 CGTCTAGTGGAACGACGACGGCACAGAAGCTTCACCGGAAATCAGAGACGCGAAAATGGT 60
Query 61 GAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTT 120
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 61 GAACATTCCAAAGACAAAGAACACTTACTGCAAGAACAAGGAATGCAAGAAGCATACTTT 120
Query 121 GCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTCTTGCTGCTCAAGGAAAGCGTCG 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCACAAGGTTACCCAGTACAAGAAGGGTAAAGACAGTCTTGCTGCTCAAGGAAAGCGTCG 180
Query 181 TTATGACCGTAAACAATCTGGTTATGGTGGTCAGACTAAGCCTGTCTTCCACAAAAAGGC 240
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 181 TTATGACCGTAAACAATCTGGTTATGGTGGTCAGACTAAGCCTGTCTTTCACAAGAAGGC 240
Query 241 TAAGACCACGAAGAAGATTGTTTTGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCA 300
||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||
Sbjct 241 TAAGACCACGAAGAAGATTGTGCTGAGGCTTCAGTGCCAAAGCTGCAAGCATTTTTCGCA 300
Query 301 GCGTCCTATCAAGAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAAC 360
|||||| |||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct 301 GCGTCCGATCAAGAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGGAAGGGAAC 360
Query 361 ATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTAC-TTGCTGGATTTG 419
|||||| || |||| ||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 361 ATCTCTATTCTAAGCTGGTTTCATCTTATTTTCTGCAATTTTTGTACTTTGCTGGATTTG 420
Query 420 GAATCCATTTGTTTTAGCTCTCTCGTATAAGATTGTCTCATCTTTGCTTGTTAACTCTAT 479
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAATCCAGGTGTTTTAGCTCTCTCGTATAAGATTGTCTCATCTTTGCTTGTTAACTCTAT 480
Query 480 ATTTTGAATCATCAAGATATGGTTTTGCTGTTAATCATTGACCTTCGATA 529
|||||||||||||||||||||||||||||||||||| | |||| ||||||
Sbjct 481 ATTTTGAATCATCAAGATATGGTTTTGCTGTTAATCCTAGACCGTCGATA 530
> Ahg946959 jgi|Araly1|946959|scaffold_703188.1
Length=365
Score = 429 bits (232), Expect = 1e-119
Identities = 308/344 (90%), Gaps = 8/344 (2%)
Strand=Plus/Plus
Query 46 AGACGCGAAAATGGTGAACATTCC-AAAGACAAAGAACACTTACTGTAAGAACAAGGAAT 104
||| |||||||||||||||||||| ||| || |||||||||||||| |||||||||||||
Sbjct 14 AGA-GCGAAAATGGTGAACATTCCTAAA-ACCAAGAACACTTACTGCAAGAACAAGGAAT 71
Query 105 GCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTCTTGCTG 164
|||| ||||| || |||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 72 GCAAGAAGCACACCTTGCACAAGGTTACTCAGTACAAAAAGGGTAAAGACAGTCTTGCTG 131
Query 165 CTCAAGGAAAGCGTCGTTATGACCGTAAACAATCTGGTTATGGTGGTCAGACTAAGCCTG 224
| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 132 CCCAAGGAAAGCGTCGTTATGACCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCG 191
Query 225 TCTTCCACAAAAAGGCTAAGACCACGAAGAAGATTGTTTTGAGGCTTCAGTGTCAAAGCT 284
|||||||||| ||||||||||| || ||||||||||| ||||||||||||| |||||||
Sbjct 192 TCTTCCACAAGAAGGCTAAGACAACCAAGAAGATTGTCCTGAGGCTTCAGTGCCAAAGCT 251
Query 285 GCAAGCACTTT-TCGCAGCGTCCTATCAAGAGGTGCAAGCA-TTTCGAGATCGGTGGTGA 342
|||| || ||| || || || || || || ||||||||||| ||| ||||||||||| ||
Sbjct 252 GCAAACA-TTTCTCTCAACGCCCGATTAAAAGGTGCAAGCACTTT-GAGATCGGTGGAGA 309
Query 343 CAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCT 386
|||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 310 CAAGAAAGGAAAGGGAACATCTCTCTTTTAAGTTG-TTTCATCT 352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19726439513
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5