BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23400.1
Length=1127
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319057 jgi|Araly1|319057|fgenesh1_pm.C_scaffold_3002073 1266 0.0
> Ahg319057 jgi|Araly1|319057|fgenesh1_pm.C_scaffold_3002073
Length=852
Score = 1266 bits (685), Expect = 0.0
Identities = 800/856 (93%), Gaps = 5/856 (1%)
Strand=Plus/Plus
Query 81 ATGGCGACTTCTTCTACTTTCTCGTCACTACTACCTTCACCACCAGCTCTTCTTTCCGAC 140
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCGGCTTCTTCTACTTTCTCGTCACTACTACCTTCACCACCGGCTCTTCTTTCCGAC 60
Query 141 CACCGTTCTCCTCCACCATCCATCAGATACTCCTTTT-CTCCCTTAACTACTCCAAAATC 199
||||| |||||||| ||||||||||||| ||| |||| || |||||||| |||||||||
Sbjct 61 CACCGCTCTCCTCCTCCATCCATCAGATTCTCTTTTTCCT-CCTTAACTGTTCCAAAATC 119
Query 200 GTCTCGTTTGGGTTTCACTGTACCGGAGAAGAGAAACCTCGCTGCTAATTCGTCTCTCGT 259
||||||||||||||||||||||||||||| |||||| ||||| || ||||||||||||||
Sbjct 120 GTCTCGTTTGGGTTTCACTGTACCGGAGAGGAGAAATCTCGCCGCGAATTCGTCTCTCGT 179
Query 260 TGAAGTATCCATTGGCGGAGAAAGTGACCCACCACCATCATCATCTGGATCAGGAGGAGA 319
||| ||||| || ||||| || | ||||||||| | ||||||||||||| || |||||
Sbjct 180 TGAGGTATCTATCGGCGGCGACCGCGACCCACCA-C--CATCATCTGGATCGGGTGGAGA 236
Query 320 CGACAAGCAAATTGCATTACTCAAACTCAAATTACTTAGTGTAGTTTCGGGATTAAACAG 379
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 237 CGACAAGCAAATTGCATTGCTTAAACTCAAATTACTTAGTGTAGTTTCGGGATTAAACAG 296
Query 380 AGGACTTGTGGCGAGTGTTGATGATTTAGAAAGAGCTGAAGTGGCTGCTAAAGAACTTGA 439
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 297 AGGACTTGTGGCGAGTGTTGATGATTTACAAAGAGCTGAAGTGGCTGCTAAAGAACTTGA 356
Query 440 AACTGCTGGGGGACCGGTTGATTTAACCGATGATCTTGATAAGCTTCAAGGGAAATGGAG 499
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 357 AACCGCTGGTGGACCGGTTGATTTAACCGATGATCTTGACAAGCTTCAAGGGAAATGGAG 416
Query 500 GCTGTTGTATAGTAGTGCGTTCTCTTCTCGGTCTTTAGGTGGTAGCCGTCCTGGTCTACC 559
||| |||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 417 GCTTTTGTATAGCAGCGCGTTCTCGTCTCGGTCTTTAGGTGGTAGCCGTCCTGGTCTACC 476
Query 560 TACTGGACGTTTGATCCCTGTTACTCTTGGCCAGGTGTTTCAACGGATTGATGTGTTTAG 619
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 477 TACTGGACGTTTGATTCCTGTAACTCTTGGCCAGGTGTTTCAACGGATTGATGTGTTTAG 536
Query 620 CAAAGATTTTGATAACATAGCAGAGGTGGAATTAGGAGCCCCTTGGCCATTTCCGCCATT 679
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 537 CAAAGATTTCGATAACATAGCAGAGGTGGAATTAGGAGCTCCTTGGCCATTTCCGCCATT 596
Query 680 AGAAGCCACTGCGACATTGGCACACAAGTTTGAACTCTTAGGCACTTGCAAGATCAAGAT 739
||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 597 AGAAGCCACCGCGACACTGGCTCACAAATTTGAACTCTTAGGCACTTGCAAGATCAAAAT 656
Query 740 AACATTTGAGAAAACAACTGTGAAGACATCGGGAAACTTGTCGCAGATTCCTCCGTTTGA 799
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 657 AACATTTGAGAAAACAACTGTGAAGACATCAGGAAACTTATCGCAGATTCCTCCGTTTGA 716
Query 800 TATCCCGAGGCTTCCCGACAGTTTCAGACCATCGTCAAACCCTGGAACTGGGGATTTCGA 859
|||||| |||||||||||||||||| | ||||||||||||||||||||||| ||||||||
Sbjct 717 TATCCCAAGGCTTCCCGACAGTTTCCGGCCATCGTCAAACCCTGGAACTGGAGATTTCGA 776
Query 860 AGTTACCTATGTTGATGATACCATGCGCATAACTCGCGGGGACAGAGGTGAACTTAGGGT 919
||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 777 AGTCACCTATGTTGATGATAATTTGCGTATAACTCGCGGGGACAGAGGTGAACTTAGGGT 836
Query 920 ATTCGTCATTGCTTAA 935
||||||||||||||||
Sbjct 837 ATTCGTCATTGCTTAA 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42011454534
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5