BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23420.1
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930371 jgi|Araly1|930371|scaffold_302828.1 442 2e-123
Ahg342182 jgi|Araly1|342182|fgenesh1_pg.C_scaffold_3001945 411 6e-114
Ahg342623 jgi|Araly1|342623|fgenesh1_pg.C_scaffold_3002386 357 8e-98
Ahg930559 jgi|Araly1|930559|scaffold_303016.1 322 3e-87
Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1 268 4e-71
Ahg479548 jgi|Araly1|479548|fgenesh2_kg.3__2249__AT3G20400.1 211 6e-54
Ahg930556 jgi|Araly1|930556|scaffold_303013.1 209 2e-53
Ahg333377 jgi|Araly1|333377|fgenesh1_pm.C_scaffold_672000001 180 2e-44
Ahg314206 jgi|Araly1|314206|fgenesh1_pm.C_scaffold_1002986 156 3e-37
Ahg904694 jgi|Araly1|904694|Al_scaffold_0003_1822 143 2e-33
Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915 58.4 9e-08
Ahg340580 jgi|Araly1|340580|fgenesh1_pg.C_scaffold_3000343 52.8 4e-06
> Ahg930371 jgi|Araly1|930371|scaffold_302828.1
Length=984
Score = 442 bits (239), Expect = 2e-123
Identities = 303/333 (91%), Gaps = 7/333 (2%)
Strand=Plus/Plus
Query 93 GAGCTTTGCAAAGAAGCACCTTGTTTGTCAAGCAAAAGTAGCTGCAAAGAAAAGAGAGTA 152
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 94 GAGCTTTGCAAAGAAGCACCTTGGTCGTCAAGCAAAAGTAGCTGCAAAGAAAAGAGAGTT 153
Query 153 TAAGGTGGTCATGATGATGGATTTTAGGGTTTATTTGATGCGCATAAATCTTCAGAACAA 212
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 154 TACGGTGGTCATGATGATGGGTTTTAGGGTTTATTTGATGCGCATAAATCTTCACAACAA 213
Query 213 CGTTGAATTGTGT-AT-AAAGCGTGAACGTGAACTTCTTTTCCCCGACGCTTCAGATCAA 270
||||||||| | | || ||| |||||| || ||||| ||||||||||||||||| |||||
Sbjct 214 CGTTGAATTAT-TCATGAAA-CGTGAAGGTAAACTTATTTTCCCCGACGCTTCATATCAA 271
Query 271 ATTTACGTCCGTCACGTCTTTCACTGCGACGGTTTATTGTTATGCATCATGAAAGACAAC 330
|| || || || || ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 272 ATCTATGTACGGCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCCTGAAAGACAAC 331
Query 331 CCTAGGCTTGTGGTTTGTAACCCGTATAGTGGACAAACCCGGTGGATCGAGAC-TACAAA 389
||||||||||||||||| ||||||||| |||| |||||||||||||||||||| | ||||
Sbjct 332 CCTAGGCTTGTGGTTTGGAACCCGTATTGTGGGCAAACCCGGTGGATCGAGACAT-CAAA 390
Query 390 TAATCCTCAGAGATTAGATGCATATTCGTATGC 422
|||| |||| ||||||||||| |||||| ||||
Sbjct 391 TAATTCTCACAGATTAGATGCGTATTCG-ATGC 422
Score = 392 bits (212), Expect = 2e-108
Identities = 262/285 (92%), Gaps = 7/285 (2%)
Strand=Plus/Plus
Query 545 GAGACATTTGGGCCGCGGTTTGCCTTCGCCGCCCTTTGAGTGGTATCTTCAAGAGTTCTC 604
||||||||| |||||| ||||||| | | ||| |||||| ||||||| |||| | |||
Sbjct 527 GAGACATTTAGGCCGC-GTTTGCC-T--CTGCCGGTTGAGTCGTATCTTGAAGA-TACTC 581
Query 605 TGTTATTATCTAATGTTAGAGATGAGCAGCTTGCGGTGTTATTTCAGCGTATGGATACAT 664
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 582 TGTTATTATCTAGTGTTAGAGATGAGCAGCTTGCGGTGTTATTTCAGCATATGGATACAT 641
Query 665 TACAGATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGGTGTCATGGAGCAGCA 724
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 642 TACAGATGGAGATCTGGGTGACAACTAAGATTGAGCCCAACACGGTGTCGTGGAGCAGCA 701
Query 725 AGTTCTTCTTATCAGTGGATATGAGAGAACTCACCGGCCGTTACTCTATGTTTTCGTTTA 784
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 702 AGTTCTTCTTATCAGTTGATATGAGAGAACTCACCGGCATTTACTCTATGTTTTCGTTTA 761
Query 785 GTGA-TGCAAGTTTCTTCATTGATGAGGAGAAGAAAGTTGCAGTG 828
|| |||||||||||||| |||||||||||||||||||||||||
Sbjct 762 -TGGCTGCAAGTTTCTTCACTGATGAGGAGAAGAAAGTTGCAGTG 805
> Ahg342182 jgi|Araly1|342182|fgenesh1_pg.C_scaffold_3001945
Length=981
Score = 411 bits (222), Expect = 6e-114
Identities = 393/471 (83%), Gaps = 29/471 (6%)
Strand=Plus/Plus
Query 90 TAGGAGCTTTGCAAAGAAGCACCTTGTTTGTCAAGCAAAAGTAGCT---GCAAA-GAAAA 145
|||||||||||||||||||||||||| |||||||| ||||||| ||||| |||||
Sbjct 24 TAGGAGCTTTGCAAAGAAGCACCTTG---CTCAAGCAAGAGTAGCTGCAGCAAAGGAAAA 80
Query 146 GAGAGTATAAGGTGGTCATGATGATGGATTTTAGGGTTTATTTGATGCGCATAAATCTTC 205
| |||| || ||||||||||||||||||||||||||||||| |||||| | | |||||||
Sbjct 81 G-GAGTTTATGGTGGTCATGATGATGGATTTTAGGGTTTATCTGATGCACGTGAATCTTC 139
Query 206 A-GA--ACAACGTTGAATTGTGTAT-AAAGCGTGAACGTGA-ACTTCTTTTCCCCGACGC 260
| | |||| |||||||| || || ||| ||| || || | |||| |||||||||||||
Sbjct 140 ACTACGACAAGGTTGAATTATGCATGAAA-CGTCAAGGT-ACACTTATTTTCCCCGACGC 197
Query 261 TTCAGATCAAATTTACGTCCGTCACGTCTTTCACTGCGACGGTTTATTGTTATGCATCAT 320
||||||||||| || || ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 198 CTCAGATCAAATCTATGTACGTCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCCT 257
Query 321 GAAAGACAACCCTAGGCTTGTGGTTTGTAACCCGTATAGTGGACAAACC-CGGTGGATCG 379
|||||||||||||||||| || |||| |||||||||| |||| ||| || ||||||||||
Sbjct 258 GAAAGACAACCCTAGGCTCGTTGTTTTTAACCCGTATTGTGGGCAA-CCACGGTGGATCG 316
Query 380 A-GACTACAAATAATCCTCAGAGATTAGA-TGCATATTCGTATGCTCTCGGATACAATAG 437
| | | ||| ||||| ||||||||| || | ||||||| | |||| |||||||||||
Sbjct 317 AAGCC-ACATATAATAATCAGAGATTGGAATTT-TATTCGTTTTCTCTGGGATACAATAG 374
Query 438 CAGTACCAAATCCCACAAAATCTTGAG-TTT-TGGTATGATGTTTGA-TTATGTCTCCTC 494
|| ||||||||||||||||||||||| ||| | ||| || | | || | |||| |
Sbjct 375 CAACACCAAATCCCACAAAATCTTGAGATTTATTTTAT-ATCATGGTCTT-T-TCTCTTT 431
Query 495 CACTTCTG-CTGAGTTCAAAATCTACGACTTTAACTCTGACTCATGGAGGG 544
||| || ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 432 GGCTT-TGGCTGAGTTCAAAATCTACGACTTTAACTCTGATTCATGGAGGG 481
Score = 294 bits (159), Expect = 6e-79
Identities = 250/292 (86%), Gaps = 14/292 (5%)
Strand=Plus/Plus
Query 548 ACATTTGGGCCGCGGTTTGCCTTCGCCGCCCTTTGAGTGGTATCTTCAAGAGT-TCTCTG 606
||||||||||||| ||||||| | | |||||||||||||| || | ||| | | ||||
Sbjct 574 ACATTTGGGCCGC-GTTTGCC-T--CTGCCCTTTGAGTGGTGTCCTGTAGA-TAT-TCTG 627
Query 607 TTA-T-TATCTAATGTTAGAGATGAGCAGCTTGCGGTGTTATTTCAGCGTA-TGGATACA 663
| | |||||| |||||||||||| |||||||| ||||||||||| || | |||||||
Sbjct 628 --AGTCTATCTATTGTTAGAGATGAACAGCTTGCTGTGTTATTTCAACG-AGAGGATACA 684
Query 664 TTACAGATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGGTGTCATGGAGCAGC 723
|| || ||||||||||||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct 685 TTTCAAATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGTTGTCGTGGGGCAGC 744
Query 724 AAGTTCTTCTTATCAGTGGATATGAGAGAACTCACCGGCCGTTACTCTATGTTTTCGTTT 783
|||||||||||||||||||||||||||| ||||||||| | | |||||||||||||
Sbjct 745 AAGTTCTTCTTATCAGTGGATATGAGAGTTCTCACCGGCAATGGGTTTATGTTTTCGTTT 804
Query 784 AGTGATGCAAGTTTCTTCATTGATGAGGAGAAGAAAGTTGCAGTGCTT-ACA 834
|||| ||||||||||||||||||||||||||||||| | || ||| || |||
Sbjct 805 AGTGGTGCAAGTTTCTTCATTGATGAGGAGAAGAAAATCGCTGTGTTTTACA 856
> Ahg342623 jgi|Araly1|342623|fgenesh1_pg.C_scaffold_3002386
Length=1329
Score = 357 bits (193), Expect = 8e-98
Identities = 360/439 (82%), Gaps = 18/439 (4%)
Strand=Plus/Plus
Query 2 TGGCGGAGGAGGTGCTTTCTAGGGTTCCGATGACATCTCTAAG-AAGACTCCGATTTACT 60
||| |||||||||||| |||||||||||| | |||||| |||| || | ||||||| |||
Sbjct 32 TGGTGGAGGAGGTGCTCTCTAGGGTTCCGTTAACATCTTTAAGAAATA-TCCGATTAACT 90
Query 61 TGCAAAAAGTGGAACACTTTATCTAGATGTAG-GAGCTTTGCAAAGAAGCACCTTGTTTG 119
|||||||||||||||| |||||| | | || | ||||||||||||||||||||||| ||
Sbjct 91 TGCAAAAAGTGGAACATTTTATCCAAAGGT-GAGAGCTTTGCAAAGAAGCACCTTG-GTG 148
Query 120 -TCAAGCAAAAGTAGCTGCAAAGAAAAGAGAGTATAAGGTGGTCATGATGATGGATTTTA 178
||||||||||| ||| |||| | ||||||||| || | |||||||||||||||||||||
Sbjct 149 ATCAAGCAAAAGAAGCAGCAACGGAAAGAGAGTTTATGATGGTCATGATGATGGATTTTA 208
Query 179 GGGTTTATTTGATGCGCA-TAAATCTTCAGAACAACGTTGAATTGTGTATAAAGCGTGAA 237
|||||||||||||||| | | |||||||| || ||||||| | |||||||||| ||||
Sbjct 209 GGGTTTATTTGATGCG-AGTCAATCTTCACAATGACGTTGAGTCATGTATAAAGCCTGAA 267
Query 238 CGTGAACTTCTTTTCCCCGACGCTTCAGATCAAATTTACGTCCGTCACGTCTTTCACTGC 297
|||||||| ||| | |||| ||| | | | || || ||| ||||||||||||
Sbjct 268 GGTGAACTTATTTGCTTAGACGAAGAAGA-CGA-TGTA--TC--TCAAGTCTTTCACTGC 321
Query 298 GACGGTTTATTGTTATGCATCATGAAAGACAACCCTAGGCTTGTGGTTTGTAACCCGTAT 357
|||||||||||||||||||| ||| |||| ||| ||||| |||||||||| |||||||||
Sbjct 322 GACGGTTTATTGTTATGCATTATGGAAGATAACACTAGGATTGTGGTTTGGAACCCGTAT 381
Query 358 AGTGGACAAACCCGGTGGATCGAGACTACAAATAAT--CCTCAGAGATTAGATGCATATT 415
| || || ||| ||||||||| | ||||| ||||| || || | ||| || | |||
Sbjct 382 TGGGGGCATACCTGGTGGATCGTGCCTACACATAATTTCCACA-A-ATTGGACGTTTATA 439
Query 416 CGTATGCTCTCGGATACAA 434
|||||||||| ||||||||
Sbjct 440 CGTATGCTCTTGGATACAA 458
> Ahg930559 jgi|Araly1|930559|scaffold_303016.1
Length=1149
Score = 322 bits (174), Expect = 3e-87
Identities = 435/556 (78%), Gaps = 38/556 (7%)
Strand=Plus/Plus
Query 3 GGCGGAGGAGGTGCTTTCTAGGGTTCCGATGACATCTCTAAGAAGACTCCGATTTACTTG 62
||| ||||||||||| | ||| ||||| |||||||||| |||| | |||||| ||||||
Sbjct 55 GGC-GAGGAGGTGCTCTGTAGAATTCCGTTGACATCTCTGAGAAAAGTCCGATCTACTTG 113
Query 63 CAAAAAGTGGAACACTTTA-TCTAGATGTAG-GAGCTTTGCAAAGAAGCACCTTGTTTG- 119
||||||||||||||||||| || | | || | ||||||||| |||||| |||||| ||
Sbjct 114 CAAAAAGTGGAACACTTTATTC-AAAGGT-GAGAGCTTTGCGAAGAAGTACCTTG-GTGA 170
Query 120 TCAAGCAAAAGTAGCTGCAA-AGAAAAGAGAGTATAAGGTGGTCATGATGATGGATTTTA 178
||||||||||||||| |||| ||||| ||||| || | |||||||||||||||||||||
Sbjct 171 TCAAGCAAAAGTAGCAGCAACGGAAAA-AGAGTTTATGATGGTCATGATGATGGATTTTA 229
Query 179 GGGTTTATTTGATGCGCATAAATCTTCAGAACAACGTTGAATTG-TGTATAAAGCGTGAA 237
||||||||||||||||| | |||||||| || ||||| || | ||||||| |||||||
Sbjct 230 GGGTTTATTTGATGCGCGTCAATCTTCACAATGACGTT-AAGTCATGTATAATGCGTGAA 288
Query 238 CGTGAACTTCTTTTCCCCGACGCTTCAGATCAAATTTACGTCCGTCACGTCTTTCACTGC 297
|||||||| || | || | | || |||| | || || ||| ||||||||||||
Sbjct 289 GGTGAACTTGTTAGCTTAGAAGATGAAG-TCAA-TGTA--TC--TCAAGTCTTTCACTGC 342
Query 298 GACGGTTTATTGTTATGCATCATGAAAGACAACCCTAGGCTTGTGGTTTGTAACCCGTAT 357
|||||||||||||||||||| ||| |||| || ||||| |||| ||||| |||||||||
Sbjct 343 GACGGTTTATTGTTATGCATTATGGAAGATAATACTAGGGTTGTTGTTTGGAACCCGTAT 402
Query 358 AGTGGACAAACCCGGTGGATCGAGACTACAA-ATAATCCTC-AGAGA-TTAGATGCATAT 414
| || |||||||||| ||||||| ||| | || || || | | | || || | |||
Sbjct 403 TGGGGGCAAACCCGGTTGATCGAGTCTA-AGCATGATT-TCCAAAAAATTT-ATTCGTAT 459
Query 415 -TCGTATGCTCTCGGATACAATA-GCAGTACCAAATCCCACAAAATCTTGAGT-T-TTGG 470
| |||||||||||||||| | | | || | ||| || | |||| | | |||
Sbjct 460 AT-GTATGCTCTCGGATACGAGAAG-AGCAGCAAGTCATGCCGCATCTACAAAATCTTG- 516
Query 471 TATGATGT-TTGATTATGTCTCCTCCACTTCTGCTGAGTTCAAAATCTACGACT-TTAAC 528
| ||| | |||||| | ||||| | |||| || |||||| ||||||||||| | |||||
Sbjct 517 -A-GATTTATTGATTTT-TCTCC-C-ACTTATGTTGAGTTTAAAATCTACGA-TATTAAC 570
Query 529 TCTGACTCATGGAGGG 544
||| | ||||||||||
Sbjct 571 TCTAATTCATGGAGGG 586
> Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1
Length=1263
Score = 268 bits (145), Expect = 4e-71
Identities = 377/482 (78%), Gaps = 44/482 (9%)
Strand=Plus/Plus
Query 5 CGGAGGAGGTGCTTTCTAGGGTTCCGATGACATCTCTAAGAAGAC--TCCGATTTACTTG 62
||||||||||||| | ||| ||||| |||||||||| || | | |||||| ||||||
Sbjct 105 CGGAGGAGGTGCTCTGTAGAATTCCGTTGACATCTCT--GAGGCCTGTCCGATCTACTTG 162
Query 63 CAAAAAGTGGAACACTTTATCTAGATGTAGGAGCTTTGCAAAGAAGCACCTTGTTTGTCA 122
||||||||||| ||||||||| | |||| |||||||||||||||||||||||| |||
Sbjct 163 CAAAAAGTGGAGCACTTTATCCAAATGTGGGAGCTTTGCAAAGAAGCACCTTG---CTCA 219
Query 123 AGCAAAAGTAGCTGCAAAGAAAAGAGAGTAT-AAGGTGGTCATGATGATGGATTTTAGGG 181
|||||||||||| | ||| |||| |||| | | |||||||||||||| | |||||||||
Sbjct 220 AGCAAAAGTAGCAG--AAGCAAAG-GAGT-TCATGGTGGTCATGATGAAGAATTTTAGGG 275
Query 182 TTTATTTGATGCGCA-TAAATCTTCAGAACAAC-GTTGAAT--T-GTGTATAAAGCGTGA 236
||||||||||| | | | |||||||| ||| || ||||||| | |||||||| || ||
Sbjct 276 TTTATTTGATGAG-AGTCAATCTTCAAAAC-ACGGTTGAATCATCATGTATAAAACGCGA 333
Query 237 ACG-TGAACTTCTTTTCCCCGACGCTTCAGATCAAATT--TACGTCCGTCACGTCTTTCA 293
| | | ||||| || | | || | ||| || || || | | ||| ||||||||
Sbjct 334 A-GCTAAACTTATTGGCTTAGGCG-AT--GATGAACTTGATATAT-C-TCAAGTCTTTCA 387
Query 294 CTGCGACGGTTTATTGTTATGCAT---CAT---GAAAGACAACCCTAGGCTTGTGGTTTG 347
|||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||
Sbjct 388 CTGCGACGGTTTATTGTTATGCATCAGCATCACCAAAGACAAGACTAGGCTCGTGGTTTG 447
Query 348 TAACCCGTATAGTGGACAAACCCGGT-GGATCGAGACTACAAAT-AA-TCCTCAGAGATT 404
||||| ||| | || || |||| || |||||| | ||| || || || || | | |
Sbjct 448 GAACCCCTATTGGGGGCATACCC-GTCCAATCGAGCCCACACATCAATTCAACA-A-ACT 504
Query 405 AGAT-GCATATTCGTATGCTCTCGGATACAATA-GCAGTACCAAATCCCACAAAATCTTG 462
||| || ||||||||||||||||||||| | | | || | |||||||||||||||||||
Sbjct 505 CGATAGC-TATTCGTATGCTCTCGGATACGACAAG-AGCAGCAAATCCCACAAAATCTTG 562
Query 463 AG 464
||
Sbjct 563 AG 564
> Ahg479548 jgi|Araly1|479548|fgenesh2_kg.3__2249__AT3G20400.1
Length=318
Score = 211 bits (114), Expect = 6e-54
Identities = 138/150 (92%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 670 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGGTGTCATGGAGCAGCAAGTTC 729
||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||
Sbjct 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGTTGTCGTGGGGCAGCAAGTTC 60
Query 730 TTCTTATCAGTGGATATGAGAGAACTCACCGGCCGTTACTCTATGTTTTCGTTTAGTGAT 789
|||||||||||||||||||||| ||||||||| | | ||||||||||||||||| |
Sbjct 61 TTCTTATCAGTGGATATGAGAGTTCTCACCGGCAATGGGTTTATGTTTTCGTTTAGTGGT 120
Query 790 GCAAGTTTCTTCATTGATGAGGAGAAGAAA 819
||||||||||||||||||||||||||||||
Sbjct 121 GCAAGTTTCTTCATTGATGAGGAGAAGAAA 150
> Ahg930556 jgi|Araly1|930556|scaffold_303013.1
Length=272
Score = 209 bits (113), Expect = 2e-53
Identities = 202/243 (83%), Gaps = 14/243 (6%)
Strand=Plus/Plus
Query 144 AAGAGAGTATAAGGTGGTCATGATGATGGATTTTAGGGTTTATTTGATGCGCATAAATCT 203
|||||||| || | |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 8 AAGAGAGTTTATGATGGTCATGATGATGGATTTTAGGGTTTATTTGATGCGCGTCAATCT 67
Query 204 TCAGAACAACGTTGAATTGTGTATAAAGCGTGAA-CGTGAACTTCTTTTCCCCGACGCTT 262
||| ||||||||||||| ||||||||||||||| | | ||||| || || |||| ||
Sbjct 68 TCACAACAACGTTGAATCATGTATAAAGCGTGAAGC-TAAACTTATTAGCCTAGACGATT 126
Query 263 CAGATCAAATTTACGTC-CGTC-ACGTCT-TTCACTGCGACGGTTTATTGTTATGCATCA 319
||| | || | | || | || | || | ||||||||||||||||||||||||||||||
Sbjct 127 CAGTTGAAGTAGATGTAAC-TCGA-GT-TGTTCACTGCGACGGTTTATTGTTATGCATCA 183
Query 320 -TGAAAGACAACCCTAGGCTT-GTGGTTTGTAACCCGTATA-GTGGACAAACCCGGTGGA 376
| |||||| || ||| | || |||||||||||||||||| | || |||||||||||||
Sbjct 184 CT-AAAGACTACACTAAG-TTCGTGGTTTGTAACCCGTATTTGGGG-CAAACCCGGTGGA 240
Query 377 TCG 379
|||
Sbjct 241 TCG 243
> Ahg333377 jgi|Araly1|333377|fgenesh1_pm.C_scaffold_672000001
Length=1047
Score = 180 bits (97), Expect = 2e-44
Identities = 214/266 (80%), Gaps = 25/266 (9%)
Strand=Plus/Plus
Query 290 TTCACTGCGACGGTTTATTGTTATGCATCA-TGAAAGACAACCCTAGGCTT-GTGGTTTG 347
|||||||||||||||||||||||||||||| | |||||| || ||| | || ||||||||
Sbjct 251 TTCACTGCGACGGTTTATTGTTATGCATCACT-AAAGACTACACTAAG-TTCGTGGTTTG 308
Query 348 TAACCCGTATA-GTGGACAAACCCGGTGGATCGAGACTACAAATAA-TCCTCAG-AGATT 404
|||||||||| | || |||||||||||||||| | | || |||| | ||| |||||
Sbjct 309 TAACCCGTATTTGGGG-CAAACCCGGTGGATCGTGTCCCCACATAAAT--TCAACAGATT 365
Query 405 AGA-T-GCATATTCGTATGCTCTCGGATACAATA-GCAGTACCAAATCCCACAAAATCTT 461
|| | | ||| || |||||||||||||| | | | |||| ||||||| ||||||||||
Sbjct 366 TGACTTGTATA--CGAATGCTCTCGGATACGACAAG-AGTAGCAAATCCTACAAAATCTT 422
Query 462 GAGT-TTTGGTATGATGT-TTGATTATGTCTCCTCC-ACTTCTGCTGAGTTCAAAATCTA 518
|| | |||| | |||| | || |||| | ||| | |||| || ||||| |||||||||
Sbjct 423 GA-TATTTG-T-TGATTTCTT--TTATCCC-CCTGCTACTTTTGTTGAGTACAAAATCTA 476
Query 519 CGACTTTAACTCTGACTCATGGAGGG 544
|||||||||||||| ||||||||||
Sbjct 477 TGACTTTAACTCTGATTCATGGAGGG 502
> Ahg314206 jgi|Araly1|314206|fgenesh1_pm.C_scaffold_1002986
Length=957
Score = 156 bits (84), Expect = 3e-37
Identities = 128/149 (86%), Gaps = 3/149 (2%)
Strand=Plus/Plus
Query 103 AAGAAGCACCTTGTTTG-TCAAGCAAAAGTAGCTGCAAAGAAAAGAGAGTATAAGGTGGT 161
||| || |||||| || |||||||||||||| |||||||||||||| | | ||||||
Sbjct 37 AAGGAGTACCTTG-ATGATCAAGCAAAAGTAGAAGCAAAGAAAAGAGAATTTCTGGTGGT 95
Query 162 CATGATGATGGATTTTAGGGTTTATTTGATGCGCATAAATCTTCAGAACAACGTTGAATT 221
|||||||||||||||||||||||||||||||||| | |||||||| || ||||||| |
Sbjct 96 CATGATGATGGATTTTAGGGTTTATTTGATGCGCGTCAATCTTCACAATGACGTTGAGTC 155
Query 222 GTGTATAAAGCGTGAACGTGAACTTCTTT 250
||||||||||||||| |||||||| |||
Sbjct 156 ATGTATAAAGCGTGAAGGTGAACTT-TTT 183
> Ahg904694 jgi|Araly1|904694|Al_scaffold_0003_1822
Length=1077
Score = 143 bits (77), Expect = 2e-33
Identities = 298/398 (75%), Gaps = 41/398 (10%)
Strand=Plus/Plus
Query 2 TGGCGGAGGAGGTGCTTTCTAGGGTTCCGA-TGACATCTCTAAGAAG-ACTCCGATTTAC 59
|||| ||||||||||| ||||||||||| | | |||||||| || || | | ||||||||
Sbjct 32 TGGCAGAGGAGGTGCTCTCTAGGGTTCC-AGTTACATCTCTGAG-AGCAGTACGATTTAC 89
Query 60 TTGCAAAAAGTGGAACACTTTATCTAGATGTAGGAGCTTTGCAAAGAAGCACCTTGTTTG 119
|||||||||||||||||||||| ||| | | |||||||| ||||||||| | |||||
Sbjct 90 TTGCAAAAAGTGGAACACTTTAACTAAACATCGGAGCTTTACAAAGAAGC---TGGTTTG 146
Query 120 TCAAGCAAAAGTAGCTGCAAAGAA-AAG-AGA-GTATAAGGT----G-G-TCATGATGAT 170
||||||||||| || ||||||| ||| || | | || | | | |||||| |||
Sbjct 147 TCAAGCAAAAGCAGAACCAAAGAAGAAGCAGGCGAAGGAGTTTCATGCGATCATGACGAT 206
Query 171 GGATTTTAGGGTTTATTTGATG--CG-CA-TA-A-ATC---TTCA----GA--ACAACGT 215
| ||| || ||||||| ||||| || || | | || |||| || |||||||
Sbjct 207 GAATTATAAGGTTTATCTGATGAGCGTCAATCTAGATGAAATTCACAAAGATGACAACGT 266
Query 216 TGAATTGTGTATAAAGCGTGAACG-TGAACTTCTTTTCCCCGACGCTT-CAGATCAAATT 273
||||| | |||||||| ||| | | ||||| || || ||| || | |||| |||
Sbjct 267 TGAATCATCTATAAAGCA-GAAAGGTAAACTTATTAGCCTAAACG-TTGCTGATCGAATA 324
Query 274 --TACGTCCGTCACGTCTT-TCACTGCGACGGTTTATTGTTATGCATCATGAAAGACAAC 330
|| || ||| || || |||||| || ||||| ||||||||||||| || ||||||
Sbjct 325 AGTATATC--TCAAGT-TTGTCACTGTGATGGTTTGTTGTTATGCATCACCAATGACAAC 381
Query 331 CCTAGGCTTGTGGTTTGTAACCCGTATAGTGGACAAAC 368
|||||||||||||||| ||||| ||| ||| |||||
Sbjct 382 TCTAGGCTTGTGGTTTGGAACCCTTATTCTGGGCAAAC 419
> Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915
Length=1782
Score = 58.4 bits (31), Expect = 9e-08
Identities = 37/40 (93%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 287 TCTTTCACTGCGACGGTTTATTGTTATGCATCATGAAAGA 326
||||||||||||||||||||||||||||| | || |||||
Sbjct 986 TCTTTCACTGCGACGGTTTATTGTTATGCGTAATCAAAGA 1025
> Ahg340580 jgi|Araly1|340580|fgenesh1_pg.C_scaffold_3000343
Length=870
Score = 52.8 bits (28), Expect = 4e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 794 GTTTCTTCATTGATGAGGAGAAGAAAGT 821
||||||||||||||||||||||||||||
Sbjct 721 GTTTCTTCATTGATGAGGAGAAGAAAGT 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31756389861
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5