BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23440.1
Length=327
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479857 jgi|Araly1|479857|fgenesh2_kg.3__2558__AT3G23440.1 283 5e-76
> Ahg479857 jgi|Araly1|479857|fgenesh2_kg.3__2558__AT3G23440.1
Length=272
Score = 283 bits (153), Expect = 5e-76
Identities = 255/299 (85%), Gaps = 27/299 (9%)
Strand=Plus/Plus
Query 28 GGCGCGTCGAGAAAACGTAAAGACACGGAGAGTGATCTAAGAGAAGCCGCCACACCGAAC 87
|||||||| ||||||||||| || ||||||||||||| | || |||| |||||||||||
Sbjct 1 GGCGCGTCAAGAAAACGTAAGGAGACGGAGAGTGATC-CA-AG-AGCCACCACACCGAAC 57
Query 88 TGGTTATTGGCTGGCTACATGGCACACGAGTACCTCACGTGCGGTACTATGTTGGGCCGG 147
||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 58 TGGCTACTGGCTGGCTACATGGCACACGAGTATCTCACGTGCGGTACTATGTTGGGCCGG 117
Query 148 AAGCTGTATTCAGGATGGGCCGAAGTTGGGCCGCTAGTCTCGCCATCACCATTACAGAGC 207
||| ||||| | |||||||||||||||||||||| | | || | | | | |
Sbjct 118 AAGTTGTATCCTGGATGGGCCGAAGTTGGGCCGC-A--C-----AT-AG-A--A--G--C 161
Query 208 AGAGAAGTGAAAAAGGCTCGCCAGAGTTACTCTGAAGTGGCGAGTGTGTTCAAAACAGAT 267
|| || || ||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 162 -GA-AA---AA---GGCTCATCAGAGTTACTCTGAAGTGGCGAGTGTGTTCAAAATAGAT 213
Query 268 GGAAACCATGTCCCTGGTGTGGTTAACCCGACCCAGCTTGCTAAATGGATCCAGATGTG 326
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 GGGAACTATGTCCCTGGTGTGGTTAACCCGACCCAGCTTGCTAAATGGATCCAGATGTG 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11561143467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5