BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23450.1
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905397 jgi|Araly1|905397|Al_scaffold_0003_2525 968 0.0
> Ahg905397 jgi|Araly1|905397|Al_scaffold_0003_2525
Length=1323
Score = 968 bits (524), Expect = 0.0
Identities = 918/1098 (84%), Gaps = 67/1098 (6%)
Strand=Plus/Plus
Query 133 TGAGCTCGGGAAGAGATGAGGATGAGAAGACGTTAGTtggaggaggaaagggtggtggct 192
|||||||||||||||||||||| |||||||| ||||||||||| || |||||||||||||
Sbjct 104 TGAGCTCGGGAAGAGATGAGGAGGAGAAGACTTTAGTTGGAGGGGGCAAGGGTGGTGGCT 163
Query 193 ttggcggtggatttggaggaggagccggtggtggag-ttggaggaggagccggtggtggc 251
||||||| ||||||||||||||||| |||||||| | ||||||||||||| ||||||||
Sbjct 164 TTGGCGGCGGATTTGGAGGAGGAGCTGGTGGTGG-GTTTGGAGGAGGAGCTGGTGGTGGA 222
Query 252 tttggaggaggagcaggcggtgggt-ttggaggaggtggtggtggaggtggaggtggagg 310
|||||||||||||| |||||| ||| |||||||||||| || ||||| || || |||||
Sbjct 223 TTTGGAGGAGGAGCTGGCGGT-GGTGGTGGAGGAGGTGGAGGAGGAGGAGGTGGAGGAGG 281
Query 311 tgg---tggtggtggaggaggctttggtggtgg--a----ggaggttttggtggt-ggac 360
||| ||||||||||||||| ||||||||||| | |||||| | ||| || ||
Sbjct 282 TGGTTTTGGTGGTGGAGGAGGTTTTGGTGGTGGACATGGTGGAGGTGTCGGT-GTCGG-- 338
Query 361 atggtggaggtgttggtgg---tggagttggcggtggacatggcggaggagtcggtggtg 417
|||||||| || ||||| ||||| ||| |||||||| || |||||||| |||||||
Sbjct 339 -TGGTGGAGTTGGCGGTGGTATTGGAGGTGGGGGTGGACACGGTGGAGGAGTTGGTGGTG 397
Query 418 ggtttggaAAAGGTGGAGGGATCGGAGGTGGAATTGGAAAAGGTGGAGGAGTTGGCGGTG 477
||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||
Sbjct 398 GGTTTGGAAAAGGTGGAGGGATCGGTGGAGGAATCGGAAAGGGTGGAGGAGTTGGCGGTG 457
Query 478 GCATCGGTAAAGGCGGCGGCATTGGTGGTGGAATAGGCAAAGGTGGAGG-AGTTGGCGGC 536
||||||||||||| |||||||||||||||||||| || ||||| || || | |||| ||
Sbjct 458 GCATCGGTAAAGGAGGCGGCATTGGTGGTGGAATCGGTAAAGGAGGCGGCA-TTGGTGGT 516
Query 537 GGTATCGGTAAAGGTGGAGGTATCGGTGGCGGG-ATCGGCAAGGGCGGAGGTA-TCGGTG 594
|| || || ||||||||||| || || || ||| |||||||| || ||||||| | ||||
Sbjct 517 GGAATAGGCAAAGGTGGAGGAATTGGCGG-GGGTATCGGCAAAGGTGGAGGTACT-GGTG 574
Query 595 GCGGGATCGGCAAGGGTGGAGGTATCGGTGGCGGGATCGGCAAGGGTGGAGGTA-TTGGT 653
|||| | |||||| ||||||||||| ||||| |||||||| || |||||||| | ||||
Sbjct 575 GCGGTACCGGCAAAGGTGGAGGTATTGGTGGTGGGATCGGTAAAGGTGGAGG-AGTTGGC 633
Query 654 GGTGGGATCGGCAAAGGTGGAGGAGTTGGCGGTGGTTTTGGTAAAGGCGGAGGTGTTGGC 713
||||| || |||||||||||||||||||| |||||||| || ||||| ||||| |||||
Sbjct 634 GGTGGAATTGGCAAAGGTGGAGGAGTTGGTGGTGGTTTCGGCAAAGGTGGAGGAGTTGGT 693
Query 714 GGTGGAATTGGCAAAGGCGGAGG-AGTTGGCGGTGGT-TTCGGCAAAGGCGGAGG-AGtt 770
||||||||||||||||| ||||| | |||||||||| || || ||||||||||| | ||
Sbjct 694 GGTGGAATTGGCAAAGGTGGAGGTA-TTGGCGGTGGCATT-GGAAAAGGCGGAGGCA-TT 750
Query 771 ggtggtggaattggcaaagg---tgga---ggt------attggc---ggtgg---catt 812
||||||||||| |||||||| |||| ||| |||||| || || ||||
Sbjct 751 GGTGGTGGAATAGGCAAAGGCGGTGGAATTGGTGGCGGCATTGGCAAAGGCGGAGGCATT 810
Query 813 ggcaaaggtggtggaattggtggGGGCATTGGCAAAGGCGGAGGCATTGGTGGGGGAA-T 871
|||||||| || || |||||||| || |||||||||||||||||||||||||| ||| |
Sbjct 811 GGCAAAGGCGGAGGCATTGGTGGCGGAATTGGCAAAGGCGGAGGCATTGGTGGTGGAGGT 870
Query 872 --A---GGTAAAGGCGGTGGAATTGGTGGCGGCATTGGCAAAGGCGGAGGGATTGGTGGT 926
| ||||| || || || || ||||| || ||||||||||| ||||| |||||||||
Sbjct 871 GGATTTGGTAAGGGTGGAGGTATCGGTGGAGGTATTGGCAAAGGGGGAGGAATTGGTGGT 930
Query 927 GGAA-T--A---GGCAAAGGCGGTGGAATTGGTGGCGGCATTGGCAAAGGCGGGGGCATT 980
||| | | || ||||| || || || || || || |||||||||||||| ||||||
Sbjct 931 GGAGGTGGATTTGGTAAAGGTGGAGGTATCGGCGGAGGTATTGGCAAAGGCGGAGGCATT 990
Query 981 GGCGGCGGAATTGGCAAAGGCGGAGGCattggtggtggaggtggatttggtaagggtgga 1040
|| ||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct 991 GGAGGCGGTATTGGCAAAGGTGGAGGTATTGGCGGAGGAGGTGGATTTGGTAAGGGTGGA 1050
Query 1041 ggcattggtggtggtattggtaaaggtgggggtattggcggaggaggtggatttggtaag 1100
|||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1051 GGCATTGGAGGCGGTATTGGCAAAGGTGGAGGTATTGGCGGAGGAGGTGGATTTGGTAAG 1110
Query 1101 ggtggaggCATTGGAGGCGGTATTGGCAAAGGCGGAGGCATTGGGGGCGGTTTCGGCAAa 1160
|||||||||||||||||||||||||| ||||| || || ||||| ||||| |||| |
Sbjct 1111 GGTGGAGGCATTGGAGGCGGTATTGGAAAAGGTGGTGGAATTGGTGGCGGCATCGG-AGG 1169
Query 1161 -ggtggaggcattggtgg 1177
|| |||||| |||||||
Sbjct 1170 TGGAGGAGGCTTTGGTGG 1187
Score = 577 bits (312), Expect = 1e-163
Identities = 924/1198 (77%), Gaps = 128/1198 (11%)
Strand=Plus/Plus
Query 252 tttggaggaggagcaggcggtgggtttggagga-g-g-tggtggtggaggtggaggtgga 308
|||||||||||||| || ||||||||||||||| | | |||||||||| |||||| |||
Sbjct 175 TTTGGAGGAGGAGCTGGTGGTGGGTTTGGAGGAGGAGCTGGTGGTGGATTTGGAGGAGGA 234
Query 309 ggtggtggtggtggaggaggctttggtggtggaggaggttttggtggtggacatggtgga 368
| ||| |||||||| ||||| ||||| |||||||| ||||| ||| ||||
Sbjct 235 GCTGGCGGTGGTGGTGGAGG---AGGTGGAGGAGGAGG---AGGTGGAGGAGGTGGTTTT 288
Query 369 ggtgttggtggtggagttggcggtggacatggcggaggagtcggtggtgggtttggaAAA 428
|||| ||| || || |||| ||||||||||| ||||| |||||| || || |
Sbjct 289 GGTGGTGGAGGAGGTTTTGGTGGTGGACATGGTGGAGGTGTCGGT-GTCGG--T------ 339
Query 429 GGTGGAGGGATCGGAGGTGGAATTGGAAAAGGTGGAGGAGTTGGCGGTGGCATCGGTAAA 488
|||||| | | || ||||| ||||| |||||| || | | | | || ||||
Sbjct 340 GGTGGA--G-TTGGCGGTGGTATTGG---AGGTGG-GG-G-T----G-GACA-CGGT--- 381
Query 489 GGCGGCGGCATTGGTGGTGGAATAGGCAAAGGTGGA-GGAGTTGGCGGCGGTATCGGTAA 547
|| || | |||||||||| | || ||||||||| ||| | || || || ||||| ||
Sbjct 382 GGAGG-AG--TTGGTGGTGGGTTTGGAAAAGGTGGAGGGA-TCGGTGGAGGAATCGG-AA 436
Query 548 A-GGTGGAGGTA-TCGGTGGCGGGATCGGCAAGGGCGGAGGTATCGGTGGCGGGATCGGC 605
| |||||||| | | || || || ||||| || || || || || ||||| || |||||
Sbjct 437 AGGGTGGAGG-AGTTGGCGGTGGCATCGGTAAAGGAGGCGGCATTGGTGGTGGAATCGGT 495
Query 606 AAGGGTGGAGGTATCGGTGGCGGGATCGGCAAGGGTGGAGGTATTGGTGGTGGG-ATCGG 664
|| || || || || ||||| || || ||||| |||||||| ||||| || ||| |||||
Sbjct 496 AAAGGAGGCGGCATTGGTGGTGGAATAGGCAAAGGTGGAGGAATTGGCGG-GGGTATCGG 554
Query 665 CAAAGGTGGAGG-AGTTGGCGGTGGTTTTGGTAAAGGCGGAGGTGTTGGCGGTGGAATTG 723
|||||||||||| | ||| || ||| || ||||| |||||| |||| ||||| || |
Sbjct 555 CAAAGGTGGAGGTA-CTGGTGGCGGTACCGGCAAAGGTGGAGGTATTGGTGGTGGGATCG 613
Query 724 GCAAAGGCGGAGGAGTTGGCGGTGG-TTTCGGCAAAGGCGGAGGAGttggtggtggaatt 782
| ||||| ||||||||||||||||| || |||||||| ||||||||||||||||| ||
Sbjct 614 GTAAAGGTGGAGGAGTTGGCGGTGGAATT-GGCAAAGGTGGAGGAGTTGGTGGTGG-TTT 671
Query 783 -ggcaaaggtggaggta-ttggcggtggcattggcaaaggtggtggaattggtggGGGCA 840
|||||||||||||| | |||| ||||| |||||||||||||| || ||||| || ||||
Sbjct 672 CGGCAAAGGTGGAGG-AGTTGGTGGTGGAATTGGCAAAGGTGGAGGTATTGGCGGTGGCA 730
Query 841 TTGGCAAAGGCGGAGGCATTGGTGGGGGAATAGGTAAAGGCGGTGGAATTGGTGGCGGCA 900
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 731 TTGGAAAAGGCGGAGGCATTGGTGGTGGAATAGGCAAAGGCGGTGGAATTGGTGGCGGCA 790
Query 901 TTGGCAAAGGCGGAGGGATTGG--------------T-GGTGG---AATAGGCAAAGGCG 942
|||||||||||||||| ||||| | ||||| ||| ||||||||||
Sbjct 791 TTGGCAAAGGCGGAGGCATTGGCAAAGGCGGAGGCATTGGTGGCGGAATTGGCAAAGGCG 850
Query 943 GTGGAATTGGTGGCGGC-----ATT-GGCAAAGGCGGGGGCATTGGCGGCGGAATTGGCA 996
| || |||||||| || ||| || || || || || || || || || |||||||
Sbjct 851 GAGGCATTGGTGGTGGAGGTGGATTTGGTAAGGGTGGAGGTATCGGTGGAGGTATTGGCA 910
Query 997 AAGGCGGAGGCattggtggtggaggtggatttggtaagggtggaggcattggtggtggta 1056
|||| ||||| |||||||||||||||||||||||||| |||||||| || || || ||||
Sbjct 911 AAGGGGGAGGAATTGGTGGTGGAGGTGGATTTGGTAAAGGTGGAGGTATCGGCGGAGGTA 970
Query 1057 ttggtaaaggtgggggtattggcggaggaggtggatttggtaagggtggaggCATTGG-- 1114
|||| ||||| || || ||||| ||| ||| ||| || || |||||||| |||||
Sbjct 971 TTGGCAAAGGCGGAGGCATTGG---AGGCGGT--ATT-GGCAAAGGTGGAGGTATTGGCG 1024
Query 1115 -AGGCGGT--ATT-GGCAAAGGCGGAGGCATTGGGGGCGGT-TTCGGCAAaggtggaggc 1169
||| ||| ||| || || || ||||||||||| |||||| || ||||||||||||||
Sbjct 1025 GAGGAGGTGGATTTGGTAAGGGTGGAGGCATTGGAGGCGGTATT-GGCAAAGGTGGAGGT 1083
Query 1170 attggtggtggcat-tgga---ggt--gga-ggaggctttggtggaggaggtggatttgg 1222
||||| || || | |||| ||| || |||||| |||| ||| ||| ||| ||
Sbjct 1084 ATTGGCGGAGG-AGGTGGATTTGGTAAGGGTGGAGGCATTGG---AGGCGGT--ATT-GG 1136
Query 1223 aaaaggtggaggaatcggtggtggaataggcaaa-ggaggagg-tttcggcggaggaggt 1280
||||||||| ||||| ||||| || || || | |||||||| ||| || ||||| |||
Sbjct 1137 AAAAGGTGGTGGAATTGGTGGCGGCATCGG-AGGTGGAGGAGGCTTT-GGTGGAGGTGGT 1194
Query 1281 gga-t---t--tgg----g--aaaggtggaggtatt-ggtggaggaggtggatttggtaa 1327
||| | | ||| | ||||| |||||| || || ||||||||||||||||||||
Sbjct 1195 GGAATCGGTGGTGGAATAGGCAAAGGAGGAGGT-TTCGGCGGAGGAGGTGGATTTGGTAA 1253
Query 1328 gggcggaggatttggcggtggaggcttcggaggtggtggcggaggtggaggcggagga 1385
||||||||||||||||||||||||| |||||||| |||||||| |||||||| |||
Sbjct 1254 GGGCGGAGGATTTGGCGGTGGAGGC---GGAGGTGGAGGCGGAGGAGGAGGCGGTGGA 1308
Score = 556 bits (301), Expect = 1e-157
Identities = 695/875 (79%), Gaps = 67/875 (8%)
Strand=Plus/Plus
Query 338 tggaggaggttttggtggtggacatggtggaggtgttggtggtggagttggcggtgga-c 396
||||||||| ||||||||| ||| ||||| | |||||||||| |||| || ||| |
Sbjct 177 TGGAGGAGGAGCTGGTGGTGGGTTTGGAGGAGGAGCTGGTGGTGGATTTGGAGGAGGAGC 236
Query 397 atggcggaggagtcggtggtgg-gtttggaAAAGGTGGA-G-GGATCGGAGGTGGAATTG 453
|||||| | || ||||| || | |||| ||| ||| | ||| |||||||| |||
Sbjct 237 -TGGCGG-TG-GT-GGTGGAGGAG-GTGGAGGAGGAGGAGGTGGA--GGAGGTGGTTTTG 289
Query 454 GAAAAGGTGGAGGA-G--TTGGCGGTGG-CATCGGTAAAGGCGGCGGCATTGGTGGTGGA 509
| ||||||||| | |||| ||||| ||| ||| ||| | ||| | |||||||||
Sbjct 290 G---TGGTGGAGGAGGTTTTGGTGGTGGACAT-GGTGGAGGTGTCGGTGTCGGTGGTGGA 345
Query 510 ATAGGCAAAGGTGGAGGAGTTGGCGG-CGGTATCGGTA-AAGGTGGAGGTA-TCGGTGGC 566
| ||| ||| | | | |||| || || | || | | |||||||| | | |||||
Sbjct 346 GTTGGC---GGT-G-GTA-TTGGAGGTGGGGGT-GG-ACACGGTGGAGG-AGTTGGTGGT 396
Query 567 GGGATCGGCAAGGGCGGAGGTATCGGTGGCGGGATCGGCAAGGGTGGAGGTA-TCGGTGG 625
||| | || || || ||||| |||||||| || ||||| ||||||||||| | | || ||
Sbjct 397 GGGTTTGGAAAAGGTGGAGGGATCGGTGGAGGAATCGGAAAGGGTGGAGG-AGTTGGCGG 455
Query 626 CGGGATCGGCAAGGGTGGAGGTATTGGTGGTGGGATCGGCAAAGGTGGAGG-AGTTGGCG 684
|| ||||| || || || || ||||||||||| ||||| ||||| || || | |||| |
Sbjct 456 TGGCATCGGTAAAGGAGGCGGCATTGGTGGTGGAATCGGTAAAGGAGGCGGCA-TTGGTG 514
Query 685 GTGGTTTTGGTAAAGGCGGAGGTGTTGGCGGTGGAATTGGCAAAGGCGGAGG-AGTTGGC 743
|||| | || ||||| ||||| ||||||| || || |||||||| ||||| | |||
Sbjct 515 GTGGAATAGGCAAAGGTGGAGGAATTGGCGGGGGTATCGGCAAAGGTGGAGGTA-CTGGT 573
Query 744 GGTGGTTTCGGCAAAGGCGGAGG-AGttggtggtggaattggcaaaggtggaggta-ttg 801
|| ||| ||||||||| ||||| | |||||||||| || || ||||||||||| | |||
Sbjct 574 GGCGGTACCGGCAAAGGTGGAGGTA-TTGGTGGTGGGATCGGTAAAGGTGGAGG-AGTTG 631
Query 802 gcggtggcattggcaaaggtggtggaattggtggGGGCATT-GGCAAAGGCGGAGGCA-T 859
||||||| |||||||||||||| ||| ||||||| || || |||||||| ||||| | |
Sbjct 632 GCGGTGGAATTGGCAAAGGTGGAGGAGTTGGTGGTGG-TTTCGGCAAAGGTGGAGG-AGT 689
Query 860 TGGTGGGGGAATAGGTAAAGGCGGTGGAATTGGTGGCGGCATTGGCAAAGGCGGAGGGAT 919
|||||| ||||| || ||||| || || ||||| || |||||||| ||||||||||| ||
Sbjct 690 TGGTGGTGGAATTGGCAAAGGTGGAGGTATTGGCGGTGGCATTGGAAAAGGCGGAGGCAT 749
Query 920 TGGTGGTGGAATAGGCAAAGGCGGTGGAATTGGTGGCGGCATTGGCAAAGGCGGGGGCAT 979
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 750 TGGTGGTGGAATAGGCAAAGGCGGTGGAATTGGTGGCGGCATTGGCAAAGGCGGAGGCAT 809
Query 980 TGGC---GGCGGA---ATTGG---C--AA-----A--GGCGGAGGCattggtggtggagg 1021
|||| |||||| ||||| | || | |||||||||||||||||||||||
Sbjct 810 TGGCAAAGGCGGAGGCATTGGTGGCGGAATTGGCAAAGGCGGAGGCATTGGTGGTGGAGG 869
Query 1022 tggatttggtaagggtggaggcattggtggtggtattggtaaaggtggg-ggtattggcg 1080
||||||||||||||||||||| || ||||| |||||||| ||||| ||| || ||||| |
Sbjct 870 TGGATTTGGTAAGGGTGGAGGTATCGGTGGAGGTATTGGCAAAGG-GGGAGGAATTGGTG 928
Query 1081 gaggaggtggatttggtaagggtggaggCATTGGAGGCGGTATTGGCAAAGGCGGAGGCA 1140
| ||||||||||||||||| |||||||| || || || ||||||||||||||||||||||
Sbjct 929 GTGGAGGTGGATTTGGTAAAGGTGGAGGTATCGGCGGAGGTATTGGCAAAGGCGGAGGCA 988
Query 1141 TTGGGGGCGGT-TTCGGCAAaggtggaggcattgg 1174
|||| |||||| || |||||||||||||| |||||
Sbjct 989 TTGGAGGCGGTATT-GGCAAAGGTGGAGGTATTGG 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66086575075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5