BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G23450.1 Length=1761 Score E Sequences producing significant alignments: (Bits) Value Ahg905397 jgi|Araly1|905397|Al_scaffold_0003_2525 968 0.0 > Ahg905397 jgi|Araly1|905397|Al_scaffold_0003_2525 Length=1323 Score = 968 bits (524), Expect = 0.0 Identities = 918/1098 (84%), Gaps = 67/1098 (6%) Strand=Plus/Plus Query 133 TGAGCTCGGGAAGAGATGAGGATGAGAAGACGTTAGTtggaggaggaaagggtggtggct 192 |||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||| Sbjct 104 TGAGCTCGGGAAGAGATGAGGAGGAGAAGACTTTAGTTGGAGGGGGCAAGGGTGGTGGCT 163 Query 193 ttggcggtggatttggaggaggagccggtggtggag-ttggaggaggagccggtggtggc 251 ||||||| ||||||||||||||||| |||||||| | ||||||||||||| |||||||| Sbjct 164 TTGGCGGCGGATTTGGAGGAGGAGCTGGTGGTGG-GTTTGGAGGAGGAGCTGGTGGTGGA 222 Query 252 tttggaggaggagcaggcggtgggt-ttggaggaggtggtggtggaggtggaggtggagg 310 |||||||||||||| |||||| ||| |||||||||||| || ||||| || || ||||| Sbjct 223 TTTGGAGGAGGAGCTGGCGGT-GGTGGTGGAGGAGGTGGAGGAGGAGGAGGTGGAGGAGG 281 Query 311 tgg---tggtggtggaggaggctttggtggtgg--a----ggaggttttggtggt-ggac 360 ||| ||||||||||||||| ||||||||||| | |||||| | ||| || || Sbjct 282 TGGTTTTGGTGGTGGAGGAGGTTTTGGTGGTGGACATGGTGGAGGTGTCGGT-GTCGG-- 338 Query 361 atggtggaggtgttggtgg---tggagttggcggtggacatggcggaggagtcggtggtg 417 |||||||| || ||||| ||||| ||| |||||||| || |||||||| ||||||| Sbjct 339 -TGGTGGAGTTGGCGGTGGTATTGGAGGTGGGGGTGGACACGGTGGAGGAGTTGGTGGTG 397 Query 418 ggtttggaAAAGGTGGAGGGATCGGAGGTGGAATTGGAAAAGGTGGAGGAGTTGGCGGTG 477 ||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||| Sbjct 398 GGTTTGGAAAAGGTGGAGGGATCGGTGGAGGAATCGGAAAGGGTGGAGGAGTTGGCGGTG 457 Query 478 GCATCGGTAAAGGCGGCGGCATTGGTGGTGGAATAGGCAAAGGTGGAGG-AGTTGGCGGC 536 ||||||||||||| |||||||||||||||||||| || ||||| || || | |||| || Sbjct 458 GCATCGGTAAAGGAGGCGGCATTGGTGGTGGAATCGGTAAAGGAGGCGGCA-TTGGTGGT 516 Query 537 GGTATCGGTAAAGGTGGAGGTATCGGTGGCGGG-ATCGGCAAGGGCGGAGGTA-TCGGTG 594 || || || ||||||||||| || || || ||| |||||||| || ||||||| | |||| Sbjct 517 GGAATAGGCAAAGGTGGAGGAATTGGCGG-GGGTATCGGCAAAGGTGGAGGTACT-GGTG 574 Query 595 GCGGGATCGGCAAGGGTGGAGGTATCGGTGGCGGGATCGGCAAGGGTGGAGGTA-TTGGT 653 |||| | |||||| ||||||||||| ||||| |||||||| || |||||||| | |||| Sbjct 575 GCGGTACCGGCAAAGGTGGAGGTATTGGTGGTGGGATCGGTAAAGGTGGAGG-AGTTGGC 633 Query 654 GGTGGGATCGGCAAAGGTGGAGGAGTTGGCGGTGGTTTTGGTAAAGGCGGAGGTGTTGGC 713 ||||| || |||||||||||||||||||| |||||||| || ||||| ||||| ||||| Sbjct 634 GGTGGAATTGGCAAAGGTGGAGGAGTTGGTGGTGGTTTCGGCAAAGGTGGAGGAGTTGGT 693 Query 714 GGTGGAATTGGCAAAGGCGGAGG-AGTTGGCGGTGGT-TTCGGCAAAGGCGGAGG-AGtt 770 ||||||||||||||||| ||||| | |||||||||| || || ||||||||||| | || Sbjct 694 GGTGGAATTGGCAAAGGTGGAGGTA-TTGGCGGTGGCATT-GGAAAAGGCGGAGGCA-TT 750 Query 771 ggtggtggaattggcaaagg---tgga---ggt------attggc---ggtgg---catt 812 ||||||||||| |||||||| |||| ||| |||||| || || |||| Sbjct 751 GGTGGTGGAATAGGCAAAGGCGGTGGAATTGGTGGCGGCATTGGCAAAGGCGGAGGCATT 810 Query 813 ggcaaaggtggtggaattggtggGGGCATTGGCAAAGGCGGAGGCATTGGTGGGGGAA-T 871 |||||||| || || |||||||| || |||||||||||||||||||||||||| ||| | Sbjct 811 GGCAAAGGCGGAGGCATTGGTGGCGGAATTGGCAAAGGCGGAGGCATTGGTGGTGGAGGT 870 Query 872 --A---GGTAAAGGCGGTGGAATTGGTGGCGGCATTGGCAAAGGCGGAGGGATTGGTGGT 926 | ||||| || || || || ||||| || ||||||||||| ||||| ||||||||| Sbjct 871 GGATTTGGTAAGGGTGGAGGTATCGGTGGAGGTATTGGCAAAGGGGGAGGAATTGGTGGT 930 Query 927 GGAA-T--A---GGCAAAGGCGGTGGAATTGGTGGCGGCATTGGCAAAGGCGGGGGCATT 980 ||| | | || ||||| || || || || || || |||||||||||||| |||||| Sbjct 931 GGAGGTGGATTTGGTAAAGGTGGAGGTATCGGCGGAGGTATTGGCAAAGGCGGAGGCATT 990 Query 981 GGCGGCGGAATTGGCAAAGGCGGAGGCattggtggtggaggtggatttggtaagggtgga 1040 || ||||| ||||||||||| ||||| ||||| || |||||||||||||||||||||||| Sbjct 991 GGAGGCGGTATTGGCAAAGGTGGAGGTATTGGCGGAGGAGGTGGATTTGGTAAGGGTGGA 1050 Query 1041 ggcattggtggtggtattggtaaaggtgggggtattggcggaggaggtggatttggtaag 1100 |||||||| || |||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1051 GGCATTGGAGGCGGTATTGGCAAAGGTGGAGGTATTGGCGGAGGAGGTGGATTTGGTAAG 1110 Query 1101 ggtggaggCATTGGAGGCGGTATTGGCAAAGGCGGAGGCATTGGGGGCGGTTTCGGCAAa 1160 |||||||||||||||||||||||||| ||||| || || ||||| ||||| |||| | Sbjct 1111 GGTGGAGGCATTGGAGGCGGTATTGGAAAAGGTGGTGGAATTGGTGGCGGCATCGG-AGG 1169 Query 1161 -ggtggaggcattggtgg 1177 || |||||| ||||||| Sbjct 1170 TGGAGGAGGCTTTGGTGG 1187 Score = 577 bits (312), Expect = 1e-163 Identities = 924/1198 (77%), Gaps = 128/1198 (11%) Strand=Plus/Plus Query 252 tttggaggaggagcaggcggtgggtttggagga-g-g-tggtggtggaggtggaggtgga 308 |||||||||||||| || ||||||||||||||| | | |||||||||| |||||| ||| Sbjct 175 TTTGGAGGAGGAGCTGGTGGTGGGTTTGGAGGAGGAGCTGGTGGTGGATTTGGAGGAGGA 234 Query 309 ggtggtggtggtggaggaggctttggtggtggaggaggttttggtggtggacatggtgga 368 | ||| |||||||| ||||| ||||| |||||||| ||||| ||| |||| Sbjct 235 GCTGGCGGTGGTGGTGGAGG---AGGTGGAGGAGGAGG---AGGTGGAGGAGGTGGTTTT 288 Query 369 ggtgttggtggtggagttggcggtggacatggcggaggagtcggtggtgggtttggaAAA 428 |||| ||| || || |||| ||||||||||| ||||| |||||| || || | Sbjct 289 GGTGGTGGAGGAGGTTTTGGTGGTGGACATGGTGGAGGTGTCGGT-GTCGG--T------ 339 Query 429 GGTGGAGGGATCGGAGGTGGAATTGGAAAAGGTGGAGGAGTTGGCGGTGGCATCGGTAAA 488 |||||| | | || ||||| ||||| |||||| || | | | | || |||| Sbjct 340 GGTGGA--G-TTGGCGGTGGTATTGG---AGGTGG-GG-G-T----G-GACA-CGGT--- 381 Query 489 GGCGGCGGCATTGGTGGTGGAATAGGCAAAGGTGGA-GGAGTTGGCGGCGGTATCGGTAA 547 || || | |||||||||| | || ||||||||| ||| | || || || ||||| || Sbjct 382 GGAGG-AG--TTGGTGGTGGGTTTGGAAAAGGTGGAGGGA-TCGGTGGAGGAATCGG-AA 436 Query 548 A-GGTGGAGGTA-TCGGTGGCGGGATCGGCAAGGGCGGAGGTATCGGTGGCGGGATCGGC 605 | |||||||| | | || || || ||||| || || || || || ||||| || ||||| Sbjct 437 AGGGTGGAGG-AGTTGGCGGTGGCATCGGTAAAGGAGGCGGCATTGGTGGTGGAATCGGT 495 Query 606 AAGGGTGGAGGTATCGGTGGCGGGATCGGCAAGGGTGGAGGTATTGGTGGTGGG-ATCGG 664 || || || || || ||||| || || ||||| |||||||| ||||| || ||| ||||| Sbjct 496 AAAGGAGGCGGCATTGGTGGTGGAATAGGCAAAGGTGGAGGAATTGGCGG-GGGTATCGG 554 Query 665 CAAAGGTGGAGG-AGTTGGCGGTGGTTTTGGTAAAGGCGGAGGTGTTGGCGGTGGAATTG 723 |||||||||||| | ||| || ||| || ||||| |||||| |||| ||||| || | Sbjct 555 CAAAGGTGGAGGTA-CTGGTGGCGGTACCGGCAAAGGTGGAGGTATTGGTGGTGGGATCG 613 Query 724 GCAAAGGCGGAGGAGTTGGCGGTGG-TTTCGGCAAAGGCGGAGGAGttggtggtggaatt 782 | ||||| ||||||||||||||||| || |||||||| ||||||||||||||||| || Sbjct 614 GTAAAGGTGGAGGAGTTGGCGGTGGAATT-GGCAAAGGTGGAGGAGTTGGTGGTGG-TTT 671 Query 783 -ggcaaaggtggaggta-ttggcggtggcattggcaaaggtggtggaattggtggGGGCA 840 |||||||||||||| | |||| ||||| |||||||||||||| || ||||| || |||| Sbjct 672 CGGCAAAGGTGGAGG-AGTTGGTGGTGGAATTGGCAAAGGTGGAGGTATTGGCGGTGGCA 730 Query 841 TTGGCAAAGGCGGAGGCATTGGTGGGGGAATAGGTAAAGGCGGTGGAATTGGTGGCGGCA 900 |||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 731 TTGGAAAAGGCGGAGGCATTGGTGGTGGAATAGGCAAAGGCGGTGGAATTGGTGGCGGCA 790 Query 901 TTGGCAAAGGCGGAGGGATTGG--------------T-GGTGG---AATAGGCAAAGGCG 942 |||||||||||||||| ||||| | ||||| ||| |||||||||| Sbjct 791 TTGGCAAAGGCGGAGGCATTGGCAAAGGCGGAGGCATTGGTGGCGGAATTGGCAAAGGCG 850 Query 943 GTGGAATTGGTGGCGGC-----ATT-GGCAAAGGCGGGGGCATTGGCGGCGGAATTGGCA 996 | || |||||||| || ||| || || || || || || || || || ||||||| Sbjct 851 GAGGCATTGGTGGTGGAGGTGGATTTGGTAAGGGTGGAGGTATCGGTGGAGGTATTGGCA 910 Query 997 AAGGCGGAGGCattggtggtggaggtggatttggtaagggtggaggcattggtggtggta 1056 |||| ||||| |||||||||||||||||||||||||| |||||||| || || || |||| Sbjct 911 AAGGGGGAGGAATTGGTGGTGGAGGTGGATTTGGTAAAGGTGGAGGTATCGGCGGAGGTA 970 Query 1057 ttggtaaaggtgggggtattggcggaggaggtggatttggtaagggtggaggCATTGG-- 1114 |||| ||||| || || ||||| ||| ||| ||| || || |||||||| ||||| Sbjct 971 TTGGCAAAGGCGGAGGCATTGG---AGGCGGT--ATT-GGCAAAGGTGGAGGTATTGGCG 1024 Query 1115 -AGGCGGT--ATT-GGCAAAGGCGGAGGCATTGGGGGCGGT-TTCGGCAAaggtggaggc 1169 ||| ||| ||| || || || ||||||||||| |||||| || |||||||||||||| Sbjct 1025 GAGGAGGTGGATTTGGTAAGGGTGGAGGCATTGGAGGCGGTATT-GGCAAAGGTGGAGGT 1083 Query 1170 attggtggtggcat-tgga---ggt--gga-ggaggctttggtggaggaggtggatttgg 1222 ||||| || || | |||| ||| || |||||| |||| ||| ||| ||| || Sbjct 1084 ATTGGCGGAGG-AGGTGGATTTGGTAAGGGTGGAGGCATTGG---AGGCGGT--ATT-GG 1136 Query 1223 aaaaggtggaggaatcggtggtggaataggcaaa-ggaggagg-tttcggcggaggaggt 1280 ||||||||| ||||| ||||| || || || | |||||||| ||| || ||||| ||| Sbjct 1137 AAAAGGTGGTGGAATTGGTGGCGGCATCGG-AGGTGGAGGAGGCTTT-GGTGGAGGTGGT 1194 Query 1281 gga-t---t--tgg----g--aaaggtggaggtatt-ggtggaggaggtggatttggtaa 1327 ||| | | ||| | ||||| |||||| || || |||||||||||||||||||| Sbjct 1195 GGAATCGGTGGTGGAATAGGCAAAGGAGGAGGT-TTCGGCGGAGGAGGTGGATTTGGTAA 1253 Query 1328 gggcggaggatttggcggtggaggcttcggaggtggtggcggaggtggaggcggagga 1385 ||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||| Sbjct 1254 GGGCGGAGGATTTGGCGGTGGAGGC---GGAGGTGGAGGCGGAGGAGGAGGCGGTGGA 1308 Score = 556 bits (301), Expect = 1e-157 Identities = 695/875 (79%), Gaps = 67/875 (8%) Strand=Plus/Plus Query 338 tggaggaggttttggtggtggacatggtggaggtgttggtggtggagttggcggtgga-c 396 ||||||||| ||||||||| ||| ||||| | |||||||||| |||| || ||| | Sbjct 177 TGGAGGAGGAGCTGGTGGTGGGTTTGGAGGAGGAGCTGGTGGTGGATTTGGAGGAGGAGC 236 Query 397 atggcggaggagtcggtggtgg-gtttggaAAAGGTGGA-G-GGATCGGAGGTGGAATTG 453 |||||| | || ||||| || | |||| ||| ||| | ||| |||||||| ||| Sbjct 237 -TGGCGG-TG-GT-GGTGGAGGAG-GTGGAGGAGGAGGAGGTGGA--GGAGGTGGTTTTG 289 Query 454 GAAAAGGTGGAGGA-G--TTGGCGGTGG-CATCGGTAAAGGCGGCGGCATTGGTGGTGGA 509 | ||||||||| | |||| ||||| ||| ||| ||| | ||| | ||||||||| Sbjct 290 G---TGGTGGAGGAGGTTTTGGTGGTGGACAT-GGTGGAGGTGTCGGTGTCGGTGGTGGA 345 Query 510 ATAGGCAAAGGTGGAGGAGTTGGCGG-CGGTATCGGTA-AAGGTGGAGGTA-TCGGTGGC 566 | ||| ||| | | | |||| || || | || | | |||||||| | | ||||| Sbjct 346 GTTGGC---GGT-G-GTA-TTGGAGGTGGGGGT-GG-ACACGGTGGAGG-AGTTGGTGGT 396 Query 567 GGGATCGGCAAGGGCGGAGGTATCGGTGGCGGGATCGGCAAGGGTGGAGGTA-TCGGTGG 625 ||| | || || || ||||| |||||||| || ||||| ||||||||||| | | || || Sbjct 397 GGGTTTGGAAAAGGTGGAGGGATCGGTGGAGGAATCGGAAAGGGTGGAGG-AGTTGGCGG 455 Query 626 CGGGATCGGCAAGGGTGGAGGTATTGGTGGTGGGATCGGCAAAGGTGGAGG-AGTTGGCG 684 || ||||| || || || || ||||||||||| ||||| ||||| || || | |||| | Sbjct 456 TGGCATCGGTAAAGGAGGCGGCATTGGTGGTGGAATCGGTAAAGGAGGCGGCA-TTGGTG 514 Query 685 GTGGTTTTGGTAAAGGCGGAGGTGTTGGCGGTGGAATTGGCAAAGGCGGAGG-AGTTGGC 743 |||| | || ||||| ||||| ||||||| || || |||||||| ||||| | ||| Sbjct 515 GTGGAATAGGCAAAGGTGGAGGAATTGGCGGGGGTATCGGCAAAGGTGGAGGTA-CTGGT 573 Query 744 GGTGGTTTCGGCAAAGGCGGAGG-AGttggtggtggaattggcaaaggtggaggta-ttg 801 || ||| ||||||||| ||||| | |||||||||| || || ||||||||||| | ||| Sbjct 574 GGCGGTACCGGCAAAGGTGGAGGTA-TTGGTGGTGGGATCGGTAAAGGTGGAGG-AGTTG 631 Query 802 gcggtggcattggcaaaggtggtggaattggtggGGGCATT-GGCAAAGGCGGAGGCA-T 859 ||||||| |||||||||||||| ||| ||||||| || || |||||||| ||||| | | Sbjct 632 GCGGTGGAATTGGCAAAGGTGGAGGAGTTGGTGGTGG-TTTCGGCAAAGGTGGAGG-AGT 689 Query 860 TGGTGGGGGAATAGGTAAAGGCGGTGGAATTGGTGGCGGCATTGGCAAAGGCGGAGGGAT 919 |||||| ||||| || ||||| || || ||||| || |||||||| ||||||||||| || Sbjct 690 TGGTGGTGGAATTGGCAAAGGTGGAGGTATTGGCGGTGGCATTGGAAAAGGCGGAGGCAT 749 Query 920 TGGTGGTGGAATAGGCAAAGGCGGTGGAATTGGTGGCGGCATTGGCAAAGGCGGGGGCAT 979 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 750 TGGTGGTGGAATAGGCAAAGGCGGTGGAATTGGTGGCGGCATTGGCAAAGGCGGAGGCAT 809 Query 980 TGGC---GGCGGA---ATTGG---C--AA-----A--GGCGGAGGCattggtggtggagg 1021 |||| |||||| ||||| | || | ||||||||||||||||||||||| Sbjct 810 TGGCAAAGGCGGAGGCATTGGTGGCGGAATTGGCAAAGGCGGAGGCATTGGTGGTGGAGG 869 Query 1022 tggatttggtaagggtggaggcattggtggtggtattggtaaaggtggg-ggtattggcg 1080 ||||||||||||||||||||| || ||||| |||||||| ||||| ||| || ||||| | Sbjct 870 TGGATTTGGTAAGGGTGGAGGTATCGGTGGAGGTATTGGCAAAGG-GGGAGGAATTGGTG 928 Query 1081 gaggaggtggatttggtaagggtggaggCATTGGAGGCGGTATTGGCAAAGGCGGAGGCA 1140 | ||||||||||||||||| |||||||| || || || |||||||||||||||||||||| Sbjct 929 GTGGAGGTGGATTTGGTAAAGGTGGAGGTATCGGCGGAGGTATTGGCAAAGGCGGAGGCA 988 Query 1141 TTGGGGGCGGT-TTCGGCAAaggtggaggcattgg 1174 |||| |||||| || |||||||||||||| ||||| Sbjct 989 TTGGAGGCGGTATT-GGCAAAGGTGGAGGTATTGG 1022 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66086575075 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5